TCONS_00072521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072521
Unique NameTCONS_00072521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072521 ID=TCONS_00072521|Name=TCONS_00072521|organism=Clytia hemisphaerica|type=transcript|length=390bp
CAGTCAGAAATAGAAGACTTAATTGCTGAATTATGTCTGAATACTTCATC
TAAAGCAGTGAAATCTTGTTTGCGAAAGTATCAATTTGGCTTAAGTGTAG
CACAGATTGAAAAGGACGTATACAAAGAGAAGGTTGAATTGCTGAAAGAG
ACTgcagaatttttaaaaatacagCATTTCGAGGATAAAACAAAGAAGGC
GTTATCACACCTGATAACCTGTAAAATCCAAAACCTTCTTCCAGACAATT
GTTCAGTCTGCAAAAGAAGGTATCGTATCAGCCTTCGTGACTGTCCGATT
CTCGAATGTGCCATTTGTGGCCAAGGGGTCCACAAACCTTGTTGGTTAAA
TCTTGCATCAATTGCTACAAATGATTTCAACCAACCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00072521-protein

>TCONS_00072521-protein ID=TCONS_00072521-protein|Name=TCONS_00072521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
QSEIEDLIAELCLNTSSKAVKSCLRKYQFGLSVAQIEKDVYKEKVELLKE
TAEFLKIQHFEDKTKKALSHLITCKIQNLLPDNCSVCKRRYRISLRDCPI
LECAICGQGVHKPCWLNLASIATNDFNQPX
Run BLAST on NCBI

transcript from alignment at scaffold_78:308397..308786

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072521 ID=TCONS_00072521|Name=TCONS_00072521|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_78:308397..308786 (Clytia hemisphaerica)
NNCAGGTTGGTTGAAATCATTTGTAGCAATTGATGCAAGATTTAACCAAC AAGGTTTGTGGACCCCTTGGCCACAAATGGCACATTCGAGAATCGGACAG TCACGAAGGCTGATACGATACCTTCTTTTGCAGACTGAACAATTGTCTGG AAGAAGGTTTTGGATTTTACAGGTTATCAGGTGTGATAACGCCTTCTTTG TTTTATCCTCGAAATGctgtatttttaaaaattctgcAGTCTCTTTCAGC AATTCAACCTTCTCTTTGTATACGTCCTTTTCAATCTGTGCTACACTTAA GCCAAATTGATACTTTCGCAAACAAGATTTCACTGCTTTAGATGAAGTAT TCAGACATAATTCAGCAATTAAGTCTTCTATTTCTGACTG

Coding sequence (CDS) from alignment at scaffold_78:308397..308786

>TCONS_00072521 ID=TCONS_00072521|Name=TCONS_00072521|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_78:308397..308786 (Clytia hemisphaerica)
NNCAGGTTGGTTGAAATCATTTGTAGCAATTGATGCAAGATTTAACCAAC
AAGGTTTGTGGACCCCTTGGCCACAAATGGCACATTCGAGAATCGGACAG
TCACGAAGGCTGATACGATACCTTCTTTTGCAGACTGAACAATTGTCTGG
AAGAAGGTTTTGGATTTTACAGGTTATCAGGTGTGATAACGCCTTCTTTG
TTTTATCCTCGAAATGctgtatttttaaaaattctgcAGTCTCTTTCAGC
AATTCAACCTTCTCTTTGTATACGTCCTTTTCAATCTGTGCTACACTTAA
GCCAAATTGATACTTTCGCAAACAAGATTTCACTGCTTTAGATGAAGTAT
TCAGACATAATTCAGCAATTAAGTCTTCTATTTCTGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045003XLOC_045003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072521-exon-scaffold_78-1491911889:308397..308786TCONS_00072521-exon-scaffold_78-1491911889:308397..308786Clytia hemisphaericaexon
TCONS_00072521-exon-scaffold_78-1510915933:308397..308786TCONS_00072521-exon-scaffold_78-1510915933:308397..308786Clytia hemisphaericaexon
TCONS_00072521-exon-scaffold_78-1575043694:308397..308786TCONS_00072521-exon-scaffold_78-1575043694:308397..308786Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072521-proteinTCONS_00072521-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:308397..308786 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.50822 2.8671 5.32637 4.23009 7.9299 8.14621 8.19686 6.8417 5.46911 4.91026 2.58159 5.30869 2.08576 3.24912 2.22601 2.38885 0.147144 1.83816 0.625088 0.872146 2.8427 2.21851 0.449482 1.02161 2.6484 3.94419 1.61261 2.29469 0.435111 1.32993
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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