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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072519 ID=TCONS_00072519|Name=TCONS_00072519|organism=Clytia hemisphaerica|type=transcript|length=875bp
aaagaagaagaagatgagcCTTACATCAGCCCCTCTACTGCTAATCACGA
TACAAACAGTCGTTCAGGCTGCCCAAGAATTCCGATGCATACAAGATTTC
CAGATCACTAAGCAAGGCAGAGGTTGGGAGAAAAACGTCAAATACGCTTT
GTCACGTAACCTGAAATCCGTGTTCACTGATTGGGTAATTGAGCTACAAC
TCGATGTCCCAGCTGAAAGTATGGATCAacattttggtgttttggttgAC
GAATCGAGACAAATTAAATATGAGCCGGGAACtgcatttttcattaaaag
tagaagccatcgaagtcttataaGACGTTCTTCAATaagatttgacgtca
ctttCCAATACGAAGGATATGTAGAGCCTCAAATCAAGCTTGCTGCTCTT
TGCGGGATGACCGATTCTACCGTCGTTTACCCGACACTAAAACCGACAAC
CAAGATTTTACCGACGTTACCCAAGACAACACCGTCAATACCAAAATGTG
TCATGCGCACAAGTTCACATATTGAAATGACATCACAAGATCTACGAATT
CCGATAACAGAGGATACATCGAGTTGGGTTATCGAGCTTGAATTTGAATC
GAAATGGAACTATTTGAGTCTTCGGACAGAGTGTATGAAACTGAAATCTG
ACGGATTAACATTAATATGTGCAAGCACGGAGAATAATAGACGGTTGGCT
AAAGGACGTACTTTTAGCTTTTCGTATTATTTCGGGTACAGTCGTGGCCA
CTCTTCACCGAAATTAATAAGTGTTAAATTTAATAGTTATGGCTGTAAAC
CATAAACTGTTTGAAATAAATTGTCTTTCTTTGGTTAAGTATTAAATTCA
TTATTCtagcttttttttattttca Run BLAST on NCBI protein sequence of TCONS_00072519-protein >TCONS_00072519-protein ID=TCONS_00072519-protein|Name=TCONS_00072519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
KKKKMSLTSAPLLLITIQTVVQAAQEFRCIQDFQITKQGRGWEKNVKYAL
SRNLKSVFTDWVIELQLDVPAESMDQHFGVLVDESRQIKYEPGTAFFIKS
RSHRSLIRRSSIRFDVTFQYEGYVEPQIKLAALCGMTDSTVVYPTLKPTT
KILPTLPKTTPSIPKCVMRTSSHIEMTSQDLRIPITEDTSSWVIELEFES
KWNYLSLRTECMKLKSDGLTLICASTENNRRLAKGRTFSFSYYFGYSRGH
SSPKLISVKFNSYGCKP Run BLAST on NCBI transcript from alignment at scaffold_78:286619..287493 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072519 ID=TCONS_00072519|Name=TCONS_00072519|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at scaffold_78:286619..287493 (Clytia hemisphaerica)
tgaaaataaaaaaaagctaGAATAATGAATTTAATACTTAACCAAAGAAA
GACAATTTATTTCAAACAGTTTATGGTTTACAGCCATAACTATTAAATTT
AACACTTATTAATTTCGGTGAAGAGTGGCCACGACTGTACCCGAAATAAT
ACGAAAAGCTAAAAGTACGTCCTTTAGCCAACCGTCTATTATTCTCCGTG
CTTGCACATATTAATGTTAATCCGTCAGATTTCAGTTTCATACACTCTGT
CCGAAGACTCAAATAGTTCCATTTCGATTCAAATTCAAGCTCGATAACCC
AACTCGATGTATCCTCTGTTATCGGAATTCGTAGATCTTGTGATGTCATT
TCAATATGTGAACTTGTGCGCATGACACATTTTGGTATTGACGGTGTTGT
CTTGGGTAACGTCGGTAAAATCTTGGTTGTCGGTTTTAGTGTCGGGTAAA
CGACGGTAGAATCGGTCATCCCGCAAAGAGCAGCAAGCTTGATTTGAGGC
TCTACATATCCTTCGTATTGGaaagtgacgtcaaatcttATTGAAGAACG
TCttataagacttcgatggcttctacttttaatgaaaaatgcaGTTCCCG
GCTCATATTTAATTTGTCTCGATTCGTcaaccaaaacaccaaaatgtTGA
TCCATACTTTCAGCTGGGACATCGAGTTGTAGCTCAATTACCCAATCAGT
GAACACGGATTTCAGGTTACGTGACAAAGCGTATTTGACGTTTTTCTCCC
AACCTCTGCCTTGCTTAGTGATCTGGAAATCTTGTATGCATCGGAATTCT
TGGGCAGCCTGAACGACTGTTTGTATCGTGATTAGCAGTAGAGGGGCTGA
TGTAAGgctcatcttcttcttcttt Coding sequence (CDS) from alignment at scaffold_78:286619..287493 >TCONS_00072519 ID=TCONS_00072519|Name=TCONS_00072519|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_78:286619..287493 (Clytia hemisphaerica)
TTATGGTTTACAGCCATAACTATTAAATTTAACACTTATTAATTTCGGTG
AAGAGTGGCCACGACTGTACCCGAAATAATACGAAAAGCTAAAAGTACGT
CCTTTAGCCAACCGTCTATTATTCTCCGTGCTTGCACATATTAATGTTAA
TCCGTCAGATTTCAGTTTCATACACTCTGTCCGAAGACTCAAATAGTTCC
ATTTCGATTCAAATTCAAGCTCGATAACCCAACTCGATGTATCCTCTGTT
ATCGGAATTCGTAGATCTTGTGATGTCATTTCAATATGTGAACTTGTGCG
CATGACACATTTTGGTATTGACGGTGTTGTCTTGGGTAACGTCGGTAAAA
TCTTGGTTGTCGGTTTTAGTGTCGGGTAAACGACGGTAGAATCGGTCATC
CCGCAAAGAGCAGCAAGCTTGATTTGAGGCTCTACATATCCTTCGTATTG
GaaagtgacgtcaaatcttATTGAAGAACGTCttataagacttcgatggc
ttctacttttaatgaaaaatgcaGTTCCCGGCTCATATTTAATTTGTCTC
GATTCGTcaaccaaaacaccaaaatgtTGATCCATACTTTCAGCTGGGAC
ATCGAGTTGTAGCTCAATTACCCAATCAGTGAACACGGATTTCAGGTTAC
GTGACAAAGCGTATTTGACGTTTTTCTCCCAACCTCTGCCTTGCTTAGTG
ATCTGGAAATCTTGTATGCATCGGAATTCTTGGGCAGCCTGAACGACTGT
TTGTATCGTGATTAGCAGTAGAGGGGCTGATGTAAGgctcatcttcttct
tctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072519-exon-scaffold_78-1491911889:286619..287493 | TCONS_00072519-exon-scaffold_78-1491911889:286619..287493 | Clytia hemisphaerica | exon |
| TCONS_00072519-exon-scaffold_78-1510915933:286619..287493 | TCONS_00072519-exon-scaffold_78-1510915933:286619..287493 | Clytia hemisphaerica | exon |
| TCONS_00072519-exon-scaffold_78-1575043694:286619..287493 | TCONS_00072519-exon-scaffold_78-1575043694:286619..287493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:286619..287493 . |
Blast
The following BLAST results are available for this feature:
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