TCONS_00072508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072508
Unique NameTCONS_00072508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072508 ID=TCONS_00072508|Name=TCONS_00072508|organism=Clytia hemisphaerica|type=transcript|length=912bp
aaagcctgggatacacggggaagAGGTTGGGTGTGGTCCTGCTGATTACC
CATAactcatttcgactgtgaatgAAATGGCGActatgtttcttataaaa
aaaactttttcgttaAGTTACGTGCATGCATCACATCCGTTTGTGCCACG
AATTTCTGTGGTCATGTTGACTATATAAAAAGTAGCCAGTTGAAGGAGTA
GAAAAATGTTTGGTTAGTGTGACCATTTTCAAGCTTCAAACGGGTTAAAT
TCGAAGACACATCATCAGCCATTCACAGCGAAACATTCCAATTTTCAAGA
TGGCGTCGACACACGTTCTCTCATTGCTCCTCCTCGTTCTTGCAGCAGTT
TTCTGCAGTGCAGACAAGAAATATACGGTTACAAAGAAAGTATATTTTGA
TATTCAAGTTGATGGCAAACCTGAAGGACGAATTGTTATGGGATTGTATG
GTGAAACTACTCCAAAAACAGTGAAGAATTTCTATGAATTATGCACAGGC
AAgAATGGTTATGGATACAAAGGCAGCAAATTTCACCGTATCATTCGTGA
TTTCATGATGCAAGGAGGAGATTTTACAAATGGTGATGGAACTGGTGGTA
AAAGCATCTACGGGGAACGTTTCCCAGATGAGAACTTTGACCTCAAACAC
ACAGCACCAGGACTTCTTTCGATGGCCAATGCCGGACCAGACACTAACGG
ATCACAATTTTTCCTCACGTACGTCTCAACTCCATGGTTAGATGGTCGAC
ACACTGTCTTCGGAGCTGTCTTGGAAGGAATGGACATCGCCCGTAAAATC
GAGAAACTTTCAACTGATCGACGTGATAAACCAACGAAGGACGTCGTGAT
CACTGACTCTGGTTCGTTAGAAGTCGCTGCACCTTTCGTTCATATCCCAA
AAAACGACATTT
Run BLAST on NCBI

transcript from alignment at scaffold_78:219100..226397-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072508 ID=TCONS_00072508|Name=TCONS_00072508|organism=Clytia hemisphaerica|type=transcript|length=7298bp|location=Sequence derived from alignment at scaffold_78:219100..226397- (Clytia hemisphaerica)
AAAGCCTGGGATACACGGGGAAGAGGTTGGGTGTGGTCCTGCTGATTACC CATAACTCATTTCGACTGTGAATGAAATGGCGACTATGTTTCTTATAAAA AAAACTTTTTCGTTAAGTTACGTGCATGCATCACATCCGTTTGTGCCACG AATTTCTGTGGTCATGTTGACTATATAAAAAGTAGCCAGTTGAAGGAGTA GAAAAATGTTTGGTTAGTGTGACCATTTTCAAGCTTCAAACGGGTTAAAT TCGAAGACACATCATCAGCCATTCACAGCGAAACATTCCAATTTTCAAGA TGGCGTCGACACACGTTCTCTCATTGCTCCTCCTCGTTCTTGCAGCAGTT TTCTGCAGTGCAGACAAGAAATATACGGTTACAAAGAAAGTATATTTTGA TATTCAAGTTGATGGCAAACCTGAAGGACGAATTGTTATGGGATTGTATG GTGAAACTACTCCAAAAACAGTGAAGAATTTCTATGAATTATGCACAGGC AAGGTAAAAAAAAGTTGAGATTTTTCATTCAGCAGATACAGTGTAGACCT AAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAATATGATTCTTC AATGGGAATCAAAACTATAAAGTGCACTTACAAACATCAATTTGTCAGAT CTCACAAAATTAATAACTACACTGTCATCATTGACAATAAAACAAACGAT TTTCTGTCAAGAGCCTTGTAAACATTCCAACAACTTCCATCGAAATGATC AATCAAAGCTCAGTTTACCATTTTAACGCGGTCCGAAGATTGAGCCGAGA ACTCTCGCATAACGCCCGAGCTCCCGCGCGGCGCGCGCCGCGGGGATGAA AAACTTCAATCTGTCAATCATTTTCTCAAGCGAAGTGTACGCGAAGTGAT TCTAGCTTTACGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCTTTGCGGGATTTTGG CTCAAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAATATGCGTTTCC CATAATTTTTGTATGAAGAGTTAGGTCTATACTGAGATACACTCATTATT TTAACTGAAATATCAAATGAACTTTTCTCTTCCTAGTATGTGAGTGAAGT CGGCTTCCTTTTTTGTATAACACATAAAGTGCGTCCCAAGAAAGCATACA AATGTCAGGGATTTTTTCAAGCACTTTTCCAGACCCGATCAATCAAACTT GTCAAACCAATCGAACAATCGAACTAAATGAACTCCATCGAACGATTAAA GTTTGATTAAAAATTTGATAGAACTCTAAGATTTTTTAAAAGATTGTGAG TGTTCGATTAAGTGCGATCAATAAGTTTCGGTTCGATCAGTTCGATAAAC CAATTTTGTTCGACAAGTTTGTGCTGCTCCGCCACCTTATAACTTCTTTT CAAAGCCAAATTCGGAATGAAAATCGGGAAATTACTTCCTACAACGGGTT ACACACTTTTCGAAATGGCAATTGGTTGCGTGCAAGGATAAAGTTTTTGC AAGCGGGGAAGATATGAGTATTTAATATCATTGAACTAATCTAAGTTTTT ACTGACCGAACTAATCGAACTGCTATTGCTTAAAAAATTGTAGGTGTTCG ATTAGGTTTGATTAATTTTTTTAATCAAACTTTAATCATTCGATGGAGTT CGATTAGTTCGATTGTTCGATTGGTTCGACAAGTTCAATTGATCAGGTCT GGACTTTTTGAGCTACTACCGTTTTTGTAAAATTAGATTGTGTTTTTGAT GCGTGACAAAACGTGAGCGAAGCGAGAATTTTTTTACTCCTAATTTGGCC CTGGATTGCTTTAAACAAGAACAAAAAGTGTAAACATTAACGCTGCTTGA GTATAAATAGAAAGATTTTGGCCCATTTTACGCCGGTCCGGTCCTTTCAA CGTCTGCCCTTAATCACGCCACGCACGAGCCCTAAAATAACACCAATAAG GGCAGGCGTAAAAAGGGCCGATTAAGTAAATAGAAAGAGTTGTGGCAAAA GCGAAAGGAATAACAACAAATCTGTTTTTTTTAATGAAAAAGTCTACAAA AGAATTTATAAGTAATAATGAGGATTCTCTTAAAAATAACATAAATCTAG CTATTTTAAGTCTTTAGATTTTACTAATTAAGTTACAATCTTTTCAACTT ACTACTGTCACCAAAAAAGACATAGTTTTATGTATTGAGGAACAATGAAT TTCTAATTTTAAGATAAAAATGTAAAGAAGGAATAATTAAAACAGAATCT GCTTTTTAGGAAAAAATCTTCAAAAGAATAGAAAATGTTTTCAAATAGTA AAATAGTATAAACAAAATATAAAGATGCCGCGGGATTGATTAATAATGGT CTATGGTCAGTTATTTTGCAAACGATNATAAAGATGCCGCAGGATTGATT AAGAATGGTGGGCGGTTAGGCGGCAGGCGTTCTCTAATTCTTCAATCGGC AGTTCGGTTATTTTTAATGAAAACAAAAGTTAAAAAGGGCACGCTATCAG TGAAAGTTATCGTGACATGTTTTATGACAGAAAGTATGATTGATAAACTT GGTGGAGTTATCAAAACAAATTTGTTGTCGAAGAGATTTAACAGTTTATA CCAATCGAAAACTCGTCAAAAGCTATATAGAAGACATTTATTTAAAACGA GTATATTTGATTTCTCAACCTAAAACTCTATATAGAAAATTGAAATTGTA ATTCTGTATAAAATGAGGCATTTTTCAGAAATGATGTCATAGAAGAGTTA TGGACCTTTATAACTTTTTATATTCAAATTTTTACTTATTGAGAATGATG TGATTTTAAGTTTACATAAAAAATGCGTCAATTGTTCACTTTTTCTTTTA ACGTCATCATTTAGTATAAATTATTCATGGACACATCGGGTAAGGATTTT TAAACACATTGAGCAGCATTGAGTAATTTTTCTGAGTCTCTAAACTATAA GCTTTTCAAAATGAGTACTCAATATTTGTCCCTCAATTTCCATATATTTC ACTTTTTTTGATGCCTGTCTAAGGGTGGATGACAAGAATTTTTGGATAAA AAAAACCACCTAACCTCAGCGTGGCAAAGGGCAAATCCTCAAAGACTCAA TATTTGGCATTTTGACCCCCCAATTAAAATTACATTTGCCAGGGATATAA AGGCTTTAGAAAAAAAACTCAAACCACCTAAAAATTCATTGATACACTTG GGGAAGGCAAAAGTTATTACTCCCAAAAAGTAAATTTTATAGCAAGATCT TTATTTCGGGTTTTCTTTCGATCTTTTCAAACAATTGCTAATAAAGTTCA ACGGGTTTTCCCTCTAACAAAACATTAACCAATGTGGATGCTTTTTCAAA GAAACACCAAAGAAAAGAAAATAGACTTTGAATCTTTTTACATTTGAATG TTTATATGTTTACCTTTTTTTGCGAAAGAAGAAGGGGGAAATCTTTCTAA TCTGCTGCATCTTCCTATTATTTATGCTGACGGAAAGTTCTTTGTTGTTA TGATTCGAATGTTTTCTCTTTCAAAAAGTTCTGTTCTGATTCAAAAAGTA AACATCATCTCTGGGGAAATCCCTCTGATTGGAATGTTTACTTAAGAAAC TCTGCTTTATAACTCGGTTTTAATTCAATTTTTAATTTTATCCATGAATT TGAGCTTTTAAATGTCTTTTTATTTTCTATTTTGCGTTATTGTCAAGATT TAGTAGTTTTTGCTGCCTTTTTATGAGATTTTACAGGTGAAATTCTACTT TTATTTTTATTTTTTTCGCCGACCTACCATCAATTGCTCTAACTTGGGAC GATTGGTGTCGAAACATGGGATTGTTGATATCTGGCCTGTATTTTCACTT ACTGTTGAATCACTTTGACAACAAATTTGTTTTGATACTTCCAACCAAGT TTATCAATTAAACTTTTTCAATCCCGCAATCAGAACCAAATGTTTTTATA AAGCATTTTAAAAGTATATAATTTGAAGAAGTACCTACCTCTTTGTGCCT CTTTGTGGCTTTTGCTTGAACAGCTCATCCAACTTGTTGAATTCGATGCT TCGACATTTCCTAGAGGCTGTTGGACTCAGCTTGCCTGTCTTGCTGTATA TTTCGTACATTCAGATTGGTAGTGATCATTGAGATCATTTTTGTCTGAAA ATTGTCTAAGATTTTCAGAAAATCCAATGATTGTTGTGTGTTTGTATGGT TCTTTAGTACTGGGTCCCTTTTAGTCCCCTTGACATATGAGAAAAGTGCA ACTTGTTAAAACATTCACCTTTTCTGATCAATGAAAAACATACGTGGATG AAACATGTTCAAACTTTACAGCCTTTTAGCCTTTTGGGGATTTATTACCA TGTCTCAGTAACTTGGTACAGATTTTTGGATGCTTCAATTGGCAATCTTT GCTTGTCATGCTATATTTACATTTTCCTTTCTTGTAAAAGCTACAAACTG GAGTTTAATCAGAGACTTTGTCCTTGGTTGCAGTATTATCAGAGGATAAG GTTTTGTAAATCGCCGTTGAAATTTGGATTTTAGGTAATTAGTCCTTCCC AGGTATATTCCATCAATCTTATTTGAGGATCTGTCGATAATAATATCTGG GACGATTGGAATGTGAGGAAGTGTCCTTCTTGGAGTGAGTTGGGTTCCAT TTAAGAAAGATTCAGTCGCTTCAACAGCTTCAGTGATCTGCGTAGGTGAA TTCGTTATTTGAGACTAAAATCCTCTCAACAATGAAATCTTGTGAGAAAA GGGCTGGTAAACAAATATTGATGTCTGTTTAAAGAGAATCTTGGAACCTT TTATGGAATTTCTGTGTATAAATTGCAAGTTTTTCTCTAAATCACATTTC TTTGGACATTCAGTCTACTAGTCTTTCTCAAATTTGACAATTTATTCCTT AAATCTGACAAAAGGTTTTGTTTTCGAATAAAATTCAGAATTGTTACAAA TTGATGAATAGATGTGTTTTTGGTGTTTTTAGTTAATTTTTCATGCTATT AACGGCACAGCATTTTTTCAATGGCACAGTATTTTTCATAGATTGGTCCA AACAACGGATTAGAATAGGTGGATTAAGAACTCATAGAAAACACTCCTCG TTAGGTTATCAAACTTTTTTACGAGTTTGCTAGCAATTAAAACTTGATAA GTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGTCCAAACAATTT TTTATCACCAAGCATTACTTTTTCACCTTAGAATGGTTATGGATACAAAG GCAGCAAATTTCACCGTATCATTCGTGATTTCATGATGCAAGGAGGAGAT TTTACAAATGGTGATGGAACTGGTAAGGCTACAAATACATTTAATACATT TTTTTGAAGATTTATAATGTAATAAGTTCCTAACTTAGAATGCAGCATTT TTCAGGGGGCTAAGAAAATACCTCCCCCGGCTAAATTTTGAAAACGTAGC TCCTACCTTTACAAAGCAAAATATTAAATAAATTTGCATGTAAAGCAACA GTTTTTATATTCTACAGTTCAATGAATTGTTCTAAATGTTTTTTTATTGC GAACAATTAATTTAAAAAGATAGAAATCAAAATTGTTTATCCTTTTTCCA GGTGGTAAAAGCATCTACGGGGAACGTTTCCCAGATGAGAACTTTGACCT CAAACACACAGCACCAGGACTTCTTTCGATGGCCAATGCCGGACCAGACA CTAACGGATCACAATTTTTCCTCACGTACGTCTCAACTCCATGGTTAGAT GGTCGACACACTGTCTTCGGAGCTGTCTTGGAAGGAATGGTATGTATTAA ACAATTTTTAGCTCTCATGCCTTGCAGTAACGTCTTAGATCTGACGCTAT TTTTACCATAATTTTTATTGGGTCATTTTCAAATGATGGTGTAAGCAAGA CTTCTTTTAAGAGTTAGCCATTCTAAAACAAATCTTGAAGTGAAAAACGC TGACTTTACTTTTAAAAGGGAGATAGTGAGAAAGTAAAGGAGTAGAGGGG TTGGATTATTTTGACAAGTTTTTCGTGAGTTTGTACCATGAAACTTATTA TATTCTACAGATTTCAATTTTTTTAAGTTTGGGAAAAATTTCTTTTCGAG AATTGGATTTCGTCTTTATTTAATTATTTTTGAGAGTTGAATAAATTACC AAAAACCTTCTTTTTTAGGACATCGCCCGTAAAATCGAGAAACTTTCAAC TGATCGACGTGATAAACCAACGAAGGACGTCGTGATCACTGACTCTGGTT CGTTAGAAGTCGCTGCACCTTTCGTTCATATCCCAAAAAACGACATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044991XLOC_044991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072508-exon-scaffold_78-1575043694:225895..226397TCONS_00072508-exon-scaffold_78-1575043694:225895..226397Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1575043694:220076..220166TCONS_00072508-exon-scaffold_78-1575043694:220076..220166Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1575043694:219609..219796TCONS_00072508-exon-scaffold_78-1575043694:219609..219796Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1575043694:219100..219229TCONS_00072508-exon-scaffold_78-1575043694:219100..219229Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1510915933:225895..226397TCONS_00072508-exon-scaffold_78-1510915933:225895..226397Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1510915933:220076..220166TCONS_00072508-exon-scaffold_78-1510915933:220076..220166Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1510915933:219609..219796TCONS_00072508-exon-scaffold_78-1510915933:219609..219796Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1510915933:219100..219229TCONS_00072508-exon-scaffold_78-1510915933:219100..219229Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1491911889:225895..226397TCONS_00072508-exon-scaffold_78-1491911889:225895..226397Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1491911889:220076..220166TCONS_00072508-exon-scaffold_78-1491911889:220076..220166Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1491911889:219609..219796TCONS_00072508-exon-scaffold_78-1491911889:219609..219796Clytia hemisphaericaexon
TCONS_00072508-exon-scaffold_78-1491911889:219100..219229TCONS_00072508-exon-scaffold_78-1491911889:219100..219229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:219100..226397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
215.504 221.602 140.346 130.008 246.944 213.099 330.901 357.768 225.408 202.624 135.471 188.039 120.601 109.854 96.6632 107.415 134.864 116.849 31.9981 51.2493 58.5495 55.1203 257.616 197.248 128.903 132.551 55.7663 39.0799 149.43 145.236
Blast
BLAST of TCONS_00072508 vs. Swiss-Prot (Human)
Match: PPIB (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 9.501e-71
Identity = 123/211 (58.29%), Postives = 154/211 (72.99%), Query Frame = 3
Query:  261 IISHSQRNIPIFKMASTHXXXXXXXXXXXXFCSADKKY--TVTKKVYFDIQVDGKPEGRIVMGLYGETTPKTVKNFYELCTGKNGYGYKGSKFHRIIRDFMMQXXXXXXXXXXXXKSIYGERFPDENFDLKHTAPGLLSMANAGPDTNGSQFFLTYVSTPWLDGRHTVFGAVLEGMDIARKIEKLSTDRRDKPTKDVVITDSGSLEVAAPF 887
            ++  S+RN+ +   A+    S+  L+L     + +KK    VT KVYFD+++  +  GR++ GL+G+T PKTV NF  L TG+ G+GYK SKFHR+I+DFM+QGGDFT GDGTGGKSIYGERFPDENF LKH  PG +SMANAG DTNGSQFF+T V T WLDG+H VFG VLEGM++ RK+E   TD RDKP KDV+I D G +EV  PF
Sbjct:    1 MLRLSERNMKVLLAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF 211          
The following BLAST results are available for this feature:
BLAST of TCONS_00072508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIB9.501e-7158.29Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
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