|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072508 ID=TCONS_00072508|Name=TCONS_00072508|organism=Clytia hemisphaerica|type=transcript|length=912bp
aaagcctgggatacacggggaagAGGTTGGGTGTGGTCCTGCTGATTACC
CATAactcatttcgactgtgaatgAAATGGCGActatgtttcttataaaa
aaaactttttcgttaAGTTACGTGCATGCATCACATCCGTTTGTGCCACG
AATTTCTGTGGTCATGTTGACTATATAAAAAGTAGCCAGTTGAAGGAGTA
GAAAAATGTTTGGTTAGTGTGACCATTTTCAAGCTTCAAACGGGTTAAAT
TCGAAGACACATCATCAGCCATTCACAGCGAAACATTCCAATTTTCAAGA
TGGCGTCGACACACGTTCTCTCATTGCTCCTCCTCGTTCTTGCAGCAGTT
TTCTGCAGTGCAGACAAGAAATATACGGTTACAAAGAAAGTATATTTTGA
TATTCAAGTTGATGGCAAACCTGAAGGACGAATTGTTATGGGATTGTATG
GTGAAACTACTCCAAAAACAGTGAAGAATTTCTATGAATTATGCACAGGC
AAgAATGGTTATGGATACAAAGGCAGCAAATTTCACCGTATCATTCGTGA
TTTCATGATGCAAGGAGGAGATTTTACAAATGGTGATGGAACTGGTGGTA
AAAGCATCTACGGGGAACGTTTCCCAGATGAGAACTTTGACCTCAAACAC
ACAGCACCAGGACTTCTTTCGATGGCCAATGCCGGACCAGACACTAACGG
ATCACAATTTTTCCTCACGTACGTCTCAACTCCATGGTTAGATGGTCGAC
ACACTGTCTTCGGAGCTGTCTTGGAAGGAATGGACATCGCCCGTAAAATC
GAGAAACTTTCAACTGATCGACGTGATAAACCAACGAAGGACGTCGTGAT
CACTGACTCTGGTTCGTTAGAAGTCGCTGCACCTTTCGTTCATATCCCAA
AAAACGACATTT Run BLAST on NCBI transcript from alignment at scaffold_78:219100..226397- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072508 ID=TCONS_00072508|Name=TCONS_00072508|organism=Clytia hemisphaerica|type=transcript|length=7298bp|location=Sequence derived from alignment at scaffold_78:219100..226397- (Clytia hemisphaerica)
AAAGCCTGGGATACACGGGGAAGAGGTTGGGTGTGGTCCTGCTGATTACC
CATAACTCATTTCGACTGTGAATGAAATGGCGACTATGTTTCTTATAAAA
AAAACTTTTTCGTTAAGTTACGTGCATGCATCACATCCGTTTGTGCCACG
AATTTCTGTGGTCATGTTGACTATATAAAAAGTAGCCAGTTGAAGGAGTA
GAAAAATGTTTGGTTAGTGTGACCATTTTCAAGCTTCAAACGGGTTAAAT
TCGAAGACACATCATCAGCCATTCACAGCGAAACATTCCAATTTTCAAGA
TGGCGTCGACACACGTTCTCTCATTGCTCCTCCTCGTTCTTGCAGCAGTT
TTCTGCAGTGCAGACAAGAAATATACGGTTACAAAGAAAGTATATTTTGA
TATTCAAGTTGATGGCAAACCTGAAGGACGAATTGTTATGGGATTGTATG
GTGAAACTACTCCAAAAACAGTGAAGAATTTCTATGAATTATGCACAGGC
AAGGTAAAAAAAAGTTGAGATTTTTCATTCAGCAGATACAGTGTAGACCT
AAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAATATGATTCTTC
AATGGGAATCAAAACTATAAAGTGCACTTACAAACATCAATTTGTCAGAT
CTCACAAAATTAATAACTACACTGTCATCATTGACAATAAAACAAACGAT
TTTCTGTCAAGAGCCTTGTAAACATTCCAACAACTTCCATCGAAATGATC
AATCAAAGCTCAGTTTACCATTTTAACGCGGTCCGAAGATTGAGCCGAGA
ACTCTCGCATAACGCCCGAGCTCCCGCGCGGCGCGCGCCGCGGGGATGAA
AAACTTCAATCTGTCAATCATTTTCTCAAGCGAAGTGTACGCGAAGTGAT
TCTAGCTTTACGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCTTTGCGGGATTTTGG
CTCAAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAATATGCGTTTCC
CATAATTTTTGTATGAAGAGTTAGGTCTATACTGAGATACACTCATTATT
TTAACTGAAATATCAAATGAACTTTTCTCTTCCTAGTATGTGAGTGAAGT
CGGCTTCCTTTTTTGTATAACACATAAAGTGCGTCCCAAGAAAGCATACA
AATGTCAGGGATTTTTTCAAGCACTTTTCCAGACCCGATCAATCAAACTT
GTCAAACCAATCGAACAATCGAACTAAATGAACTCCATCGAACGATTAAA
GTTTGATTAAAAATTTGATAGAACTCTAAGATTTTTTAAAAGATTGTGAG
TGTTCGATTAAGTGCGATCAATAAGTTTCGGTTCGATCAGTTCGATAAAC
CAATTTTGTTCGACAAGTTTGTGCTGCTCCGCCACCTTATAACTTCTTTT
CAAAGCCAAATTCGGAATGAAAATCGGGAAATTACTTCCTACAACGGGTT
ACACACTTTTCGAAATGGCAATTGGTTGCGTGCAAGGATAAAGTTTTTGC
AAGCGGGGAAGATATGAGTATTTAATATCATTGAACTAATCTAAGTTTTT
ACTGACCGAACTAATCGAACTGCTATTGCTTAAAAAATTGTAGGTGTTCG
ATTAGGTTTGATTAATTTTTTTAATCAAACTTTAATCATTCGATGGAGTT
CGATTAGTTCGATTGTTCGATTGGTTCGACAAGTTCAATTGATCAGGTCT
GGACTTTTTGAGCTACTACCGTTTTTGTAAAATTAGATTGTGTTTTTGAT
GCGTGACAAAACGTGAGCGAAGCGAGAATTTTTTTACTCCTAATTTGGCC
CTGGATTGCTTTAAACAAGAACAAAAAGTGTAAACATTAACGCTGCTTGA
GTATAAATAGAAAGATTTTGGCCCATTTTACGCCGGTCCGGTCCTTTCAA
CGTCTGCCCTTAATCACGCCACGCACGAGCCCTAAAATAACACCAATAAG
GGCAGGCGTAAAAAGGGCCGATTAAGTAAATAGAAAGAGTTGTGGCAAAA
GCGAAAGGAATAACAACAAATCTGTTTTTTTTAATGAAAAAGTCTACAAA
AGAATTTATAAGTAATAATGAGGATTCTCTTAAAAATAACATAAATCTAG
CTATTTTAAGTCTTTAGATTTTACTAATTAAGTTACAATCTTTTCAACTT
ACTACTGTCACCAAAAAAGACATAGTTTTATGTATTGAGGAACAATGAAT
TTCTAATTTTAAGATAAAAATGTAAAGAAGGAATAATTAAAACAGAATCT
GCTTTTTAGGAAAAAATCTTCAAAAGAATAGAAAATGTTTTCAAATAGTA
AAATAGTATAAACAAAATATAAAGATGCCGCGGGATTGATTAATAATGGT
CTATGGTCAGTTATTTTGCAAACGATNATAAAGATGCCGCAGGATTGATT
AAGAATGGTGGGCGGTTAGGCGGCAGGCGTTCTCTAATTCTTCAATCGGC
AGTTCGGTTATTTTTAATGAAAACAAAAGTTAAAAAGGGCACGCTATCAG
TGAAAGTTATCGTGACATGTTTTATGACAGAAAGTATGATTGATAAACTT
GGTGGAGTTATCAAAACAAATTTGTTGTCGAAGAGATTTAACAGTTTATA
CCAATCGAAAACTCGTCAAAAGCTATATAGAAGACATTTATTTAAAACGA
GTATATTTGATTTCTCAACCTAAAACTCTATATAGAAAATTGAAATTGTA
ATTCTGTATAAAATGAGGCATTTTTCAGAAATGATGTCATAGAAGAGTTA
TGGACCTTTATAACTTTTTATATTCAAATTTTTACTTATTGAGAATGATG
TGATTTTAAGTTTACATAAAAAATGCGTCAATTGTTCACTTTTTCTTTTA
ACGTCATCATTTAGTATAAATTATTCATGGACACATCGGGTAAGGATTTT
TAAACACATTGAGCAGCATTGAGTAATTTTTCTGAGTCTCTAAACTATAA
GCTTTTCAAAATGAGTACTCAATATTTGTCCCTCAATTTCCATATATTTC
ACTTTTTTTGATGCCTGTCTAAGGGTGGATGACAAGAATTTTTGGATAAA
AAAAACCACCTAACCTCAGCGTGGCAAAGGGCAAATCCTCAAAGACTCAA
TATTTGGCATTTTGACCCCCCAATTAAAATTACATTTGCCAGGGATATAA
AGGCTTTAGAAAAAAAACTCAAACCACCTAAAAATTCATTGATACACTTG
GGGAAGGCAAAAGTTATTACTCCCAAAAAGTAAATTTTATAGCAAGATCT
TTATTTCGGGTTTTCTTTCGATCTTTTCAAACAATTGCTAATAAAGTTCA
ACGGGTTTTCCCTCTAACAAAACATTAACCAATGTGGATGCTTTTTCAAA
GAAACACCAAAGAAAAGAAAATAGACTTTGAATCTTTTTACATTTGAATG
TTTATATGTTTACCTTTTTTTGCGAAAGAAGAAGGGGGAAATCTTTCTAA
TCTGCTGCATCTTCCTATTATTTATGCTGACGGAAAGTTCTTTGTTGTTA
TGATTCGAATGTTTTCTCTTTCAAAAAGTTCTGTTCTGATTCAAAAAGTA
AACATCATCTCTGGGGAAATCCCTCTGATTGGAATGTTTACTTAAGAAAC
TCTGCTTTATAACTCGGTTTTAATTCAATTTTTAATTTTATCCATGAATT
TGAGCTTTTAAATGTCTTTTTATTTTCTATTTTGCGTTATTGTCAAGATT
TAGTAGTTTTTGCTGCCTTTTTATGAGATTTTACAGGTGAAATTCTACTT
TTATTTTTATTTTTTTCGCCGACCTACCATCAATTGCTCTAACTTGGGAC
GATTGGTGTCGAAACATGGGATTGTTGATATCTGGCCTGTATTTTCACTT
ACTGTTGAATCACTTTGACAACAAATTTGTTTTGATACTTCCAACCAAGT
TTATCAATTAAACTTTTTCAATCCCGCAATCAGAACCAAATGTTTTTATA
AAGCATTTTAAAAGTATATAATTTGAAGAAGTACCTACCTCTTTGTGCCT
CTTTGTGGCTTTTGCTTGAACAGCTCATCCAACTTGTTGAATTCGATGCT
TCGACATTTCCTAGAGGCTGTTGGACTCAGCTTGCCTGTCTTGCTGTATA
TTTCGTACATTCAGATTGGTAGTGATCATTGAGATCATTTTTGTCTGAAA
ATTGTCTAAGATTTTCAGAAAATCCAATGATTGTTGTGTGTTTGTATGGT
TCTTTAGTACTGGGTCCCTTTTAGTCCCCTTGACATATGAGAAAAGTGCA
ACTTGTTAAAACATTCACCTTTTCTGATCAATGAAAAACATACGTGGATG
AAACATGTTCAAACTTTACAGCCTTTTAGCCTTTTGGGGATTTATTACCA
TGTCTCAGTAACTTGGTACAGATTTTTGGATGCTTCAATTGGCAATCTTT
GCTTGTCATGCTATATTTACATTTTCCTTTCTTGTAAAAGCTACAAACTG
GAGTTTAATCAGAGACTTTGTCCTTGGTTGCAGTATTATCAGAGGATAAG
GTTTTGTAAATCGCCGTTGAAATTTGGATTTTAGGTAATTAGTCCTTCCC
AGGTATATTCCATCAATCTTATTTGAGGATCTGTCGATAATAATATCTGG
GACGATTGGAATGTGAGGAAGTGTCCTTCTTGGAGTGAGTTGGGTTCCAT
TTAAGAAAGATTCAGTCGCTTCAACAGCTTCAGTGATCTGCGTAGGTGAA
TTCGTTATTTGAGACTAAAATCCTCTCAACAATGAAATCTTGTGAGAAAA
GGGCTGGTAAACAAATATTGATGTCTGTTTAAAGAGAATCTTGGAACCTT
TTATGGAATTTCTGTGTATAAATTGCAAGTTTTTCTCTAAATCACATTTC
TTTGGACATTCAGTCTACTAGTCTTTCTCAAATTTGACAATTTATTCCTT
AAATCTGACAAAAGGTTTTGTTTTCGAATAAAATTCAGAATTGTTACAAA
TTGATGAATAGATGTGTTTTTGGTGTTTTTAGTTAATTTTTCATGCTATT
AACGGCACAGCATTTTTTCAATGGCACAGTATTTTTCATAGATTGGTCCA
AACAACGGATTAGAATAGGTGGATTAAGAACTCATAGAAAACACTCCTCG
TTAGGTTATCAAACTTTTTTACGAGTTTGCTAGCAATTAAAACTTGATAA
GTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGTCCAAACAATTT
TTTATCACCAAGCATTACTTTTTCACCTTAGAATGGTTATGGATACAAAG
GCAGCAAATTTCACCGTATCATTCGTGATTTCATGATGCAAGGAGGAGAT
TTTACAAATGGTGATGGAACTGGTAAGGCTACAAATACATTTAATACATT
TTTTTGAAGATTTATAATGTAATAAGTTCCTAACTTAGAATGCAGCATTT
TTCAGGGGGCTAAGAAAATACCTCCCCCGGCTAAATTTTGAAAACGTAGC
TCCTACCTTTACAAAGCAAAATATTAAATAAATTTGCATGTAAAGCAACA
GTTTTTATATTCTACAGTTCAATGAATTGTTCTAAATGTTTTTTTATTGC
GAACAATTAATTTAAAAAGATAGAAATCAAAATTGTTTATCCTTTTTCCA
GGTGGTAAAAGCATCTACGGGGAACGTTTCCCAGATGAGAACTTTGACCT
CAAACACACAGCACCAGGACTTCTTTCGATGGCCAATGCCGGACCAGACA
CTAACGGATCACAATTTTTCCTCACGTACGTCTCAACTCCATGGTTAGAT
GGTCGACACACTGTCTTCGGAGCTGTCTTGGAAGGAATGGTATGTATTAA
ACAATTTTTAGCTCTCATGCCTTGCAGTAACGTCTTAGATCTGACGCTAT
TTTTACCATAATTTTTATTGGGTCATTTTCAAATGATGGTGTAAGCAAGA
CTTCTTTTAAGAGTTAGCCATTCTAAAACAAATCTTGAAGTGAAAAACGC
TGACTTTACTTTTAAAAGGGAGATAGTGAGAAAGTAAAGGAGTAGAGGGG
TTGGATTATTTTGACAAGTTTTTCGTGAGTTTGTACCATGAAACTTATTA
TATTCTACAGATTTCAATTTTTTTAAGTTTGGGAAAAATTTCTTTTCGAG
AATTGGATTTCGTCTTTATTTAATTATTTTTGAGAGTTGAATAAATTACC
AAAAACCTTCTTTTTTAGGACATCGCCCGTAAAATCGAGAAACTTTCAAC
TGATCGACGTGATAAACCAACGAAGGACGTCGTGATCACTGACTCTGGTT
CGTTAGAAGTCGCTGCACCTTTCGTTCATATCCCAAAAAACGACATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072508-exon-scaffold_78-1575043694:225895..226397 | TCONS_00072508-exon-scaffold_78-1575043694:225895..226397 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1575043694:220076..220166 | TCONS_00072508-exon-scaffold_78-1575043694:220076..220166 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1575043694:219609..219796 | TCONS_00072508-exon-scaffold_78-1575043694:219609..219796 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1575043694:219100..219229 | TCONS_00072508-exon-scaffold_78-1575043694:219100..219229 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1510915933:225895..226397 | TCONS_00072508-exon-scaffold_78-1510915933:225895..226397 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1510915933:220076..220166 | TCONS_00072508-exon-scaffold_78-1510915933:220076..220166 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1510915933:219609..219796 | TCONS_00072508-exon-scaffold_78-1510915933:219609..219796 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1510915933:219100..219229 | TCONS_00072508-exon-scaffold_78-1510915933:219100..219229 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1491911889:225895..226397 | TCONS_00072508-exon-scaffold_78-1491911889:225895..226397 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1491911889:220076..220166 | TCONS_00072508-exon-scaffold_78-1491911889:220076..220166 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1491911889:219609..219796 | TCONS_00072508-exon-scaffold_78-1491911889:219609..219796 | Clytia hemisphaerica | exon |
| TCONS_00072508-exon-scaffold_78-1491911889:219100..219229 | TCONS_00072508-exon-scaffold_78-1491911889:219100..219229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:219100..226397 - |
Blast
BLAST of TCONS_00072508 vs. Swiss-Prot (Human)
Match: PPIB (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2) HSP 1 Score: 221.861 bits (564), Expect = 9.501e-71 Identity = 123/211 (58.29%), Postives = 154/211 (72.99%), Query Frame = 3
Query: 261 IISHSQRNIPIFKMASTHXXXXXXXXXXXXFCSADKKY--TVTKKVYFDIQVDGKPEGRIVMGLYGETTPKTVKNFYELCTGKNGYGYKGSKFHRIIRDFMMQXXXXXXXXXXXXKSIYGERFPDENFDLKHTAPGLLSMANAGPDTNGSQFFLTYVSTPWLDGRHTVFGAVLEGMDIARKIEKLSTDRRDKPTKDVVITDSGSLEVAAPF 887
++ S+RN+ + A+ S+ L+L + +KK VT KVYFD+++ + GR++ GL+G+T PKTV NF L TG+ G+GYK SKFHR+I+DFM+QGGDFT GDGTGGKSIYGERFPDENF LKH PG +SMANAG DTNGSQFF+T V T WLDG+H VFG VLEGM++ RK+E TD RDKP KDV+I D G +EV PF
Sbjct: 1 MLRLSERNMKVLLAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF 211
The following BLAST results are available for this feature:
|
