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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072502 ID=TCONS_00072502|Name=TCONS_00072502|organism=Clytia hemisphaerica|type=transcript|length=1240bp
gttcttataaaaagaaatgtgTACCTTTAAAGAAGAAGTTGACATGACTT
TAGGCAGCCGAGAGAACATAGCTGAGGAACCCATAATTTTTCCGCGAAAC
TAAATCTTATTTGCCAAGAAACTATAAGAGAATTGTTACTAAATAAAGCA
GATGAATACTTTCCTGAACGTTTTGTAGAATTATAAATATGCATAATATA
CCTAAGCCCCTGATCctacaaataataaaattccaAACTTGTACTTGGTT
TCTTTGTTCAAAGCGTTCAATTTTGCGCATTCAGATACAATTCATCGACT
TCACTAACATTTCATATTTAAttgttcaaataaaaaaactcaaaagacTT
GACGAGTCAGCAAATATTCTAATTTAAAAACCAattgaaaattatatata
ttttaaaatttctaaatttgggcAAAATAAAACCCTTTCTTACCCCGGAA
AATTAAggaaaaaatggcaaatttcacATGATCTTTTAGATGAATTTACG
GTAGAAAGCTTTAAAGGGATTACcagatgattttttatatttggctTGGA
TATACCTTTTATGGTCCAGAGAGACACCTCTAAATCTTTTGACCCAATAT
TTTTCCGAATCtgagatatttgactttgaaatctaatctaatctttgaaa
aataatttggtcaaaaactttggaggtGTTTCTATTAGGACATAAAAGTT
ATCCctaagccaaatatcaaaaatcatctgataatccctttaaaTATAAT
CTTTTGACCGTGAATTTACCCCAATAATCACAGTGCTTTACCCATGTGTA
CTACGACTGAGTGAAGGTAAAGTTTTTCCTCAGGGCAGCTTTTCGCCACG
TGTCTTTGACagtttgatttccaaaatgtttgacaGCTTTAAATGATGgc
aattcaaaataaacaacaatatCCCAAATACTGAATATCGTGTTCCCAAT
CATCAATGCGAAAGTTAAACATAAAACAAATCCAAGGAAAAGTTTCATGT
AATTCGATTTCTTTTCGAACGTATGAAAGTAAACAATGATAGGATAGATA
ATACAAAGCAGAGCGAGCGGTAGTGCGCCGACGATAGAGATGACAGGTGA
GAAGTAAGGGATCATGATATCAACCAATACAAATGCTAAAGCGATTGATG
AGCGAAGTGCAAACCTTTTCCATGTAAActctataaaaacaatgaaagaa
ttttgattaaaattccTTATGGTAAGGGaatggtcagaaa Run BLAST on NCBI transcript from alignment at scaffold_78:72587..73952- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072502 ID=TCONS_00072502|Name=TCONS_00072502|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at scaffold_78:72587..73952- (Clytia hemisphaerica)
GTTCTTATAAAAAGAAATGTGTACCTTTAAAGAAGAAGTTGACATGACTT
TAGGCAGCCGAGAGAACATAGCTGAGGAACCCATAATTTTTCCGCGAAAC
TAAATCTTATTTGCCAAGAAACTATAAGAGAATTGTTACTAAATAAAGCA
GATGAATACTTTCCTGAACGTTTTGTAGAATTATAAATATGCATAATATA
CCTAAGCCCCTGATCCTACAAATAATAAAATTCCAAACTTGTACTTGGTT
TCTTTGTTCAAAGCGTTCAATTTTGCGCATTCAGATACAATTCATCGACT
TCACTAACATTTCATATTTAATTGTTCAAATAAAAAAACTCAAAAGACTT
GACGAGTCAGCAAATATTCTAATTTAAAAACCAATTGAAAATTATATATA
TTTTAAAATTTCTAAATTTGGGCAAAATAAAACCCTTTCTTACCCCGGAA
AATTAAGGAAAAAATGGCAAATTTCACATGATCTTTTAGATGAATTTACG
GTAGAAAGCTTTAAAGGGATTACCAGATGATTTTTTATATTTGGCTTGGA
TATACCTTTTATGGTCCAGAGAGACACCTCTAAATCTTTTGACCCAATAT
TTTTCCGAATCTGAGATATTTGACTTTGAAATCTAATCTAATCTTTGAAA
AATAATTTGGTCAAAAACTTTGGAGGTGTTTCTATTAGGACATAAAAGTT
ATCCCTAAGCCAAATATCAAAAATCATCTGATAATCCCTTTAAATATAAT
CTTTTGACCGTGAATTTACCCCAATAATCACAGTGCTTTACCCATGTGTA
CTACANCTATTAGGACATAAAAGTTATCCCTAAGCCAAATATCAAAAATC
ATCTGATAATCCCTTTAAATATAATCTTTTGACCGTGAATCTACCCCAAT
AATCACAGTGTCTTTACCCATGTGTACTACGACTGAGTGAAGGTAAAGTT
TTTCCTCAGGGCAGCTTTTCGCCACGTGTCTTTGACAGTTTGATTTCCAA
AATGTTTGACAGCTTTAAATGATGGCAATTCAAAATAAACAACAATATCC
CAAATACTGAATATCGTGTTCCCAATCATCAATGCGAAAGTTAAACATAA
AACAAATCCAAGGAAAAGTTTCATGTAATTCGATTTCTTTTCGAACGTAT
GAAAGTAAACAATGATAGGATAGATAATACAAAGCAGAGCGAGCGGTAGT
GCGCCGACGATAGAGATGACAGGTGAGAAGTAAGGGATCATGATATCAAC
CAATACAAATGCTAAAGCGATTGATGAGCGAAGTGCAAACCTTTTCCATG
TAAACTCTATAAAAACAATGAAAGAATTTTGATTAAAATTCCTTATGGTA
AGGGAATGGTCAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072502-exon-scaffold_78-1575043694:73149..73952 | TCONS_00072502-exon-scaffold_78-1575043694:73149..73952 | Clytia hemisphaerica | exon |
| TCONS_00072502-exon-scaffold_78-1575043694:72587..73022 | TCONS_00072502-exon-scaffold_78-1575043694:72587..73022 | Clytia hemisphaerica | exon |
| TCONS_00072502-exon-scaffold_78-1510915933:73149..73952 | TCONS_00072502-exon-scaffold_78-1510915933:73149..73952 | Clytia hemisphaerica | exon |
| TCONS_00072502-exon-scaffold_78-1510915933:72587..73022 | TCONS_00072502-exon-scaffold_78-1510915933:72587..73022 | Clytia hemisphaerica | exon |
| TCONS_00072502-exon-scaffold_78-1491911889:73149..73952 | TCONS_00072502-exon-scaffold_78-1491911889:73149..73952 | Clytia hemisphaerica | exon |
| TCONS_00072502-exon-scaffold_78-1491911889:72587..73022 | TCONS_00072502-exon-scaffold_78-1491911889:72587..73022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:72587..73952 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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