TCONS_00072498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072498
Unique NameTCONS_00072498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072498 ID=TCONS_00072498|Name=TCONS_00072498|organism=Clytia hemisphaerica|type=transcript|length=1293bp
TTGTTATTCATAATACAACAATTGAATCAAGATGAAGACAATTTTAATCC
TTGCAACTGTTCTCGTTGTGTTGGCACTAACAGAAGCGTCACCGCATCAT
ATCTTCTCTAAATACAAACAGTATTATTACAAGAAGTATCagtgcaaaga
aaaaaaatgtacagATGATGTATTGATTGTATGCGGTAATGATGGTCGAA
CTTATTGGAATGAATGCCGTTTGGATAatgagaaatgtaaaaacaagaaa
ctaaagaaAGCAAACAATGGGCCATGTGATAATGCTTTCAGAGGAATACG
TGGTTTACAAAGAAATCCTGTCCTTGGATCTGATGGAAAAGAATACTCTC
ACATTGCTTATTTGAATTTGGAATCTTGTTTAACAAAAACATACATTCAA
CCTGTCAAAGCTGACAAATCTTCTCTGGCGCTTGTTGTTGGTGCACCCGA
AGCAAAATTTGTTTGTGGAACAGACAACGAAACGTACAGTAGTATACAAT
ACATTCGAGTTGCTCAATGTGAacatttgaatttgaagaaaaaacacgAT
GGCCCATGTACCCCTCttacgacaacaacaacaaaaaaaccgAAACACAA
ACCTCACATATTCCAAAAAAGACATTAAAAGAACAATCTCTCACAAAAAT
CAAAGGATCAAACTAAAGCAGGATgtgtgaacttttttttttaaatcaaa
atttaaatatttgttATTAAACGTTCACAATTTActcaatttaattttta
actttttttaactgtaatattatctcttttgtcTCGGCACCCTCGGCCCC
AGGAtctaatttttttctcgctcttttgaaaatatgacAGTCGCGCTCAA
AATTTTCTCTCCCTACAATTTTGGGTCACGTCTCTTTTAACGTCGTTATT
CTGACTCTAGATTCTCGTGAAGCCCTACATAGCGGCTCCTTGTGTGAAGA
AAAACAGTGTCCTGGAGTCGAGGATGTTTTCTCGGTATGCATCGAACTTT
AGtatctcaaaatatttaatttctttaTCAACACTATAAAATCGTTacct
tttttatttatcttgtaGTACCCTCCTTTACAAAAAAGATATCACTACAC
GATTCAGCCTCTAGTCATTTATTAACTAAGCTATTAACTGAGCCAAAGTT
AAGTTACTTGAGTGTAGcttcatgatttttttgatgCATGCATATTATTT
AGCAGCCAACAAACccggatgagctggagtttttacaacgtCGGTCATGA
TTTTTGATGTGTATTTCACAGAACGCAAAAACAGAATAAGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_78:12690..18304-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072498 ID=TCONS_00072498|Name=TCONS_00072498|organism=Clytia hemisphaerica|type=transcript|length=5615bp|location=Sequence derived from alignment at scaffold_78:12690..18304- (Clytia hemisphaerica)
TTGTTATTCATAATACAACAATTGAATCAAGATGAAGACAATTTTAATCC
TTGCAACTGTTCTCGTTGTGTTGGCACTAACAGAAGCGTCACCGCATCAT
ATCTTCTCTAAATACAAACAGTATTATTACAAGAGTAAGTTATTATTTGT
TGTATTTTCTCATTATATATATTTCATCAAGAAAAAAGGTAGCCTGGGAA
TCCAAGCTCATAATTTTAGAAAAAACAAAAAATACCTCACCTCACAANGC
CCTGGCAAACAAACAAGATTAGTATTCTCTTTGATCTGTTGTTATTCACC
GACACGGGAAATTATGACAGATCTGCAAAGTTCTCTCCTCCTGTAGAATA
ATTCGACTCAAAAATATTCCAAAATAACTAACATGCCTGATTTTTTTTCC
AAAAGGCCTTTTTGCACCAGAAAGATGTTGGTAATTGGGTAATCCAACAT
CACATCTTTTTATAATATAATACAGGATGAAAAGTGAAAAAAGATTAAAC
CTCGTATTAAGAATATTTTGAAAATTGTTTCTTTCTGTTACTAGAATTGT
AACAAAACAATTAGTAAGTGTCAAGACACAAAATTAGTAAGCCTCTTTGT
AAAAAAATACACTACACGTTCATGCATCTTTTGAACTAAAATAGATTTTC
AATAAACAGACCTTTAGGCTAACGCTATGGTCTATTGAATAGGGAAATTA
CTTCAGCATACATGAGTTGTCCTCAGGAAAAACATGATAAAATATTTCAT
CATAAGGCAACAGCTGTAATCTATGCCGTAGTAATTAGTTATTCGATGGA
CCATCCTGATCACCGAACGTCTATCATAAAGGTGGGTGAGTCCAGTCAAA
ACAGGGAGGCGATCTGTAGCATCACGCTTGGGGGGGGGCAGTCAGGCAAA
TTGACCGACGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCAAAATATGA
AATGCACTGTAAGGGTGGGCTTTTGATAAATGCACTGTAAGGGTGGGCTT
TTGATAAATGCACTGTAAGGGTGGAAATTTCAGCAAATCTGGGAAAAATT
GCACATTTTTGCTCCAAAATCTTGATTTGATTTTGCTCCAAAAGAGTTTA
AAATTTGAAAAAATGCACTGTAAGGGTATGAATTTCACCGATTTTTTTCT
ACACTGTAAGAGTGCGATTCTAAAAGCCAATTTTTTCGCCATACATACCG
TCAGTTGGTAAACCCACTGCCCCCCCGGGCCTTGTCTCAATAATTTTCAG
ATAAATTGAAACAAACAATTGGCAAACAAACTCTGATACTTTTTCTTAAG
TACACGTAGATTTGGTCAAGCAACATAGTTGCAAGAAAAAAGTCAATAAT
GGATTACTGTTTTATCAGATATCAAACTATCAGTTTTTGGCAATAAAAAT
CTTCCATATTCCCAAGTCAAAACAATTTGAATTGAGATTAAAGTGAAACG
TACAAAATCACGAATCAGCTCACAAAATCTTTATGAGTAATCTCTTGTTC
ATTTTTCTTATCTGATTAAATCTTAAACTTGTTGTGAGGCTCACAGTTTT
GAACGAAATCTCCAGATCTGGGAGTTTTTCTGCCACCTACCTTAAAATCA
CGACAATTGTAATGTGAAAATTTTTGTAGTTGAGAATTTTATGGGGGGGG
GTATCAAACAGACCATTTTCTGCAAGTTTTTGGGCTTTCACACGAAATCT
CCAAGTTTTTAGAGGAACAAATTAACAGTCTCCAACTCTTGTTCTTTTTT
TTGTACAAAATATCTGGTTTCACCACCTTCGATATCCTACATGGAAAATG
AAAAGTTTTGACTTCAAGAACTTCAAGTATATAACTTCTATGTGACTATG
TGACTATATGACTTCTTATATAAACCATCTATCATCTGTATGCTTCCTTC
TTCCCATTTCTATCAGTCTGGTGCCTGGCTTATCAATCTTTTCATTACCA
TTGGCATCAAGAGCCACTTTTTCAAATTTTTAAAGGAGGGTCAAAAATAC
ATGAACAGAATCTTATACACATTTCCCGTCGATGAGCTAATGTTTTGATC
GATTAAGGTATGTGATTGGTTCTTAGTAGCTGTGACGTCAATGCAACCAC
GGTAACATCAGTAGAAAATTATCTTCCAGAAAATGAAAGCTTGCGAAAAA
ATAGTTGAAATTCAACTTTTTTTTCACTGACGTCAGCGAATCTCAATCCT
TTTTTGCCAGGGCGATTCGAAACGACCATCAAAAAATTATAAAAAAAGTG
AGAATCAAGGCTGGTCTCCACTTTCACGCGAAACGAGCGAAAACTTTTTG
ACGTTTTTGTAAGGTCATTGGTCGGTTGAAAAATGAAGCAATTCCATTGG
TCGAAATTGACGCAACAGATGAAAAAAGTAGAACTTCCTTCAACTTTTTT
TTGTTCGCGCGAAACTTTTTTATTACGTAATCTTTTCCTCATGCAAAAAA
GGTTAAGTCGCCCATTTCGCGCGAAAAGTGGAGACCGGCCTTCAGGCCCT
GGGTACGAGGTCGCTATCACTATATAAAAAAAAAAGAAAAATCAGAAGAT
GAAGGGTTTTACACCACGCAGTTTTTTTAAACGCTTAAAAATATCCTTAT
ACGACTATATATTTTTAAGCGAATAAGATAATACTACGTCCTTAGTAAAA
TTTATGAAGATCTCTCATCTTTATTTTAGAGTATCAGTGCAAAGAAAAAA
AATGTACAGATGATGTATTGATTGTATGCGGTAATGATGGTCGAACTTAT
TGGAATGAATGCCGTTTGGATAATGAGAAATGTAAAAACAAGAAACTAAA
GAAAGCAAACAATGGGCCATGTGATAGTAAGTCGTCTAACATTCTTACAT
TAAATTCTTAGCGTGCTGTCTCCTTTTTTTTTATGTTCCGAGAATATATA
GACAACGCAAACTAAGTCTAAGCCTGTATATCAGACTACCCTCGCACGGG
ATAGACTTTTATTAATTTTTTTTCGCGCGTGATTTTTCTACTTAGTCGGT
ACCCCTACAGTCGGTACCCACACCAAGGTTAGCGGACTATCCGCAATAGA
TATCTGTTACTTTACTATATATTTTCACAAAAGTGGATTTTGCATTTGTA
GAATGTTTGGGAATATTCTCCCCCTTATGGTGTCTGACCACTTCATGTCT
GTCTTAAAACTCCTGTTGAAGATGTCACCTGAATCAGCCTTAATTAACTT
TTTTATTTATTTTCTTCCGAATATAGATGCTTTCAGAGGAATACGTGGTT
TACAAAGAAATCCTGTCCTTGGATCTGATGGAAAAGAATACTCTCACATT
GCTTATTTGAATTTGGAATCTTGTTTAACAAAAACATACATTCAACCTGT
CAAAGCTGACAAATGTAAGTGCTATTTTAGACTAGCATACTATTCTCCGC
TTTTCTTCTTTATGGCTAGTTGAAAAAAAGAAAAAGAGCAAGATTGTTGG
ATAGCACGATGAGAATTTATGATACAAAAACGTTTGTAATTCTTTTTTTC
TTCTTTCAATAACGGATATAGTTAACAAATGTGCCAACAATGTTTAATTA
AGGGAAGTAGTTGCAAATTACAAATANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGGGGCTCTGATTATGATTAGTGATCATCATCTGCATA
ATAGAAAGGTTTGCGATTTTTATGTCCTACAAATCTCCATATATTAAATT
TCTTATAATTAAAGCTTCTCTGGCGCTTGTTGTTGGTGCACCCGAAGCAA
AATTTGTTTGTGGAACAGACAACGAAACGTACAGTAGTATACAATACATT
CGAGTTGCTCAATGTGAACATTTGAATTTGAAGAAAAAACACGATGGCCC
ATGTAAGTATACTAGTTTAATTCAGTCAGCTGTACGGTACTCGGTCGGTT
GGTTAAAAATAGCCTTTGACTTTTAAATCTCTCTGCACAAAAAATATCTT
GAAAACTCTTCGATGAAAGGAAATGTGCTTTTAAACATCATGTCATGTGG
CGTTGTTAAGATTATCGAGAATTTAAATAAATTTACTTGAACAAATTTGA
TTGGCTTCTTTTTTTACATATCATATCAGGTACCCCTCTTACGACAACAA
CAACAAAAAAACCGAAACACAAACCTCACATATTCCAAAAAAGACATTAA
AAGAACAATCTCTCACAAAAATCAAAGGATCAAACTAAAGCAGGATGTGT
GAACTTTTTTTTTTAAATCAAAATTTAAATATTTGTTATTAAACGTTCAC
AATTTACTCAATTTAATTTTTAACTTTTTTTAACTGTAATATTATCTCTT
TTGTCTCGGCACCCTCGGCCCCAGGATCTAATTTTTTTCTCGCTCTTTTG
AAAATATGACAGTCGCGCTCAAAATTTTCTCTCCCTACAATTTTGGGTCA
CGTCTCTTTTAACGTCGTTATTCTGACTCTAGATTCTCGTGAAGCCCTAC
ATAGCGGCTCCTTGTGTGAAGAAAAACAGTGTCCTGGAGTCGAGGATGTT
TTCTCGGTATGCATCGAACTTTAGTATCTCAAAATATTTAATTTCTTTAT
CAACACTATAAAATCGTTACCTTTTTTATTTATCTTGTAGTACCCTCCTT
TACAAAAAAGATATCACTACACGATTCAGCCTCTAGTCATTTATTAACTA
AGCTATTAACTGAGCCAAAGTTAAGTTACTTGAGTGTAGCTTCATGATTT
TTTTGATGCATGCATATTATTTAGCAGCCAACAAACCCGGATGAGCTGGA
GTTTTTACAACGTCGGTCATGATTTTTGATGTGTATTTCACAGAACGCAA
AAACAGAATAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044987XLOC_044987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072498-exon-scaffold_78-1575043694:18171..18304TCONS_00072498-exon-scaffold_78-1575043694:18171..18304Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1575043694:15479..15625TCONS_00072498-exon-scaffold_78-1575043694:15479..15625Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1575043694:14941..15078TCONS_00072498-exon-scaffold_78-1575043694:14941..15078Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1575043694:13653..13790TCONS_00072498-exon-scaffold_78-1575043694:13653..13790Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1575043694:12690..13425TCONS_00072498-exon-scaffold_78-1575043694:12690..13425Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1510915933:18171..18304TCONS_00072498-exon-scaffold_78-1510915933:18171..18304Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1510915933:15479..15625TCONS_00072498-exon-scaffold_78-1510915933:15479..15625Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1510915933:14941..15078TCONS_00072498-exon-scaffold_78-1510915933:14941..15078Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1510915933:13653..13790TCONS_00072498-exon-scaffold_78-1510915933:13653..13790Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1510915933:12690..13425TCONS_00072498-exon-scaffold_78-1510915933:12690..13425Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1491911889:18171..18304TCONS_00072498-exon-scaffold_78-1491911889:18171..18304Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1491911889:15479..15625TCONS_00072498-exon-scaffold_78-1491911889:15479..15625Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1491911889:14941..15078TCONS_00072498-exon-scaffold_78-1491911889:14941..15078Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1491911889:13653..13790TCONS_00072498-exon-scaffold_78-1491911889:13653..13790Clytia hemisphaericaexon
TCONS_00072498-exon-scaffold_78-1491911889:12690..13425TCONS_00072498-exon-scaffold_78-1491911889:12690..13425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:12690..18304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140083	0	0	0	7.27766	5.15672	0.913911	0.363634	0.341513	0.364367	0	0.0726601	0.988839	0.825074	39.4952	7.67662	2.68971	0.648272	0	0	0	0	0	0	0	0	0	0.110465	0.0936411	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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