TCONS_00072488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072488
Unique NameTCONS_00072488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072488 ID=TCONS_00072488|Name=TCONS_00072488|organism=Clytia hemisphaerica|type=transcript|length=3653bp
aaattcctcagctacattatatgtacggaaaaggttttctccaggcTTTT
TCAATCCCAGGATTAAACTATGAGGGCGGTTCCGCTCGCTATTTTCCTTT
CAACATTGAGCCCCAGGATAATCAATGAAAGAGATTTTAATATTAATGTT
GAAATGTGTATTTTTCCGATAAATTTAGATatatactcaacaaaaaataa
ggtggttttaaacaaatctttgagaaattggcgtttctttttgttctaat
atatgcaaatcacgtcgaaaaaagaatacatttccgcctttactttcact
tttgctttcGTGCTACGCGAATCTGATTGGATAAACACCACTCGCTatca
aattctgattggctgtaagtctttagcttcgggattctgattggattatT
TCCCATGCCACGgctgaattttgattggttgaaactttCTGAACGTGAAT
TCTGATcggatgaatacctgaaaagtaaacaatagtatgtaagtattttg
cttatcaaaatctaaagatttccagggggctttatttactttgtatgaTG
ATAATTAAGCCTACAATGAAGCACCcagttttcagagcatgtcGTGGTTG
CCCCCAAGGAAAAATTTCCAACATAAAACTCTGCCCCTAAGATCCGTTTC
CCACCACAAAAAAAGGCAGAAAAACAGGTAAATATAGCcagttttcaatg
attttgccCCTGAACTGtagatattatcaaaattttgcccCTGCCCTTGA
AAAGTAAGCAATCTCTGCCCTCGAGATCTCGATGATTTCTGCCATGCTCT
GAAAACTGGTGAAGCACCAAGAAAAAAAACCAACATAGAACAGGTAATAA
GACCTTATGCTAAAAACGAAACCCATTACggcaaaaatttctcaaaaata
gcaattttcgtAGTActtcaaatattgatacttgactgtactggTTTTTT
AAGCTAGGGGGGGGGCAATAGTCGTTTGGAAGACTTATGGCTATATTGAt
tattagaacaataaaagatgggtGCCGCATGCAAGGGTagtggaaaacac
cccctgataataatagggttaaaaagttaaaaatcaaattgaaagcTTTA
CTGTAGTAACTGGGAGGATAAAAaggaaaagaacaaaaagtcaAACAAAA
ATGAAGGAGAAGTTGACTAAATGGCTATCACAAGTTGTACAAATCAGAAG
TTTCTTAAAActgctttttaatcaaaaattgacTTTATGAACTgtcaatt
ttagaatttttgctttgtacatttttgaaaatgcatCGCAAATCACAAAA
AACTATACGTTAATTTAATCACtgcttttttaagaaagaattattttcaa
attttaagtatTTGGAGcaagttaccaacttttctatGTTCTAATTTTTA
ATGCACCTGCATTCAGTTTTACTGTAGTAACTGGGATGACCTTTAGATAA
AAAGGAAAAGACAAAAAGTCAAACAAAAGTGGCTTTGCTAAAGAAAGAGG
AGGCAGGAAGGAGCAGGCCTTAGCAATTTTCAGTAAGGACAGTCCTGGGA
AATGGAGGAGATCGAAAGtttcttttcttcaaatatattttcttttaaaa
gctgTGACAATTCTTTACAAATGAGATAAAGAGAGAAAATCTTGTGGAGC
TAACATCTATGATAATAAAATGCAAGAGGGCCTCAAATGAGGAACATGAA
CACAGGAAACTTCAAACACTTCTTGCAAGTTATTGAACACAGTTCAAGTC
ATTCCCTCACAATGTGAAATTGATATGCTTGAAAACGACCACTTCCAATC
AGGAGGGAGGATCAAAATCATGTGATTCATGCTCAAAAAGAAGCTGTACC
ATTATAATCATTGTGCTTGCTGTTCTATGTTGTTGTCTCATATCCGTAGC
CATCTATCTTGGAGTCAAATCGACCAAAACATCATTGAAACCTAGTACCT
TGAATAATGGGTTACAATTCTTTCAAGTATCGGATACCCATCTTGATATT
TATTACAATGATAAAGTTGATGGTTTGAATGGGCAGTTATGTAGATCAAT
GAATCAAACAGGCGGATATAAAGTCAATTTTACAGAAGGATCAGCTCCTT
ATGGGAGAGTGCATTGTGATTCACCGTACAAGTTGGTTCAATCATCAGCA
GATTACATTGGAACACTAAATGAAGAGTCTAATGTAAAAGCGCAATTCAT
TTTATTGTCAGgtGACCAAGCAGCTCATGCTTACTCTAAATTTCCTGAAG
TGGATGCATACAAAAGTTTAGTGTGGTCAATTGTCAACAGCACAAGAATC
TTCTATGAGGCTACTGGTTTGCCAATCATTTTCAGCATTGGAAACAATGA
TATCCCCCTTCATTATAATCCACCAGTTGAACACCCTGAGTCGTTTTATG
GAGACCTATCAAAGGAAGTAACCAAGTACATCTTTCCAAAGAGCTCTGTG
TTGGCTGAATTGAACAGTGTCAAAGAATTCAATGAATCCTTTCTACAAGG
GGGTTATTATGCTGTCAATGTTTCAGAATTTCTGCAACTCATCACGTTGA
GTACAAACTATTGGAACTCAAGATGCTTTACAATCAATCCAAGTATTACC
ACCATTGGTGATCGCCAAATGAAATGGCTGGAAAACACTCTCAAAACTGC
TGCAGCAACgaacaaaaaagttttggtcTCAGGACACATCCCAGCAGGTA
TTTCAACTTACAAAGATGAAGGGagtttttggttaaaaaattacaCAACA
GTTTACGTCAAACTCATGACTGATTTTGCAGACATTATAACAGGGCAGTT
TTATGGACATGCACATAAAGACaagatcaaaattcaaaacgttCACGATT
CTTTCTATCCAAATACACAACCTTCAATACCAAAGGCTTTTCTTTTGATG
TCTCCAAGCATTACACCCATCCAAGGAAATAATGCAGCCTTTCGTTTGTT
TACTTTGAGTAAAGATCTTGAGCTGTCTGATTATACACAATATTATATGG
ATTTTATACTTGCTAATGtattttcaaaGCCTTCATGGAAAAAAGAATAC
ACGTTCTCTGAATGTTATGGGGCTAGCATCTCAGCAAAATCCATCCAAGA
TATTGTACAGAATTTCATCTCCTCATCTGACAACTCAACCTGGGTACGTT
ACATGACCCATATGAGAACGTTGTATGGTGGTTTTTCAACTGAAGTTATG
TTCAGAGAGTATTGCGGTGCACAACATTTTACTTTGGAAGCTTACTTAGC
TTGTGTGAAATATTATGAGACCAATGGATTTTGAATCCATTGGTTTTTGT
GAGTAACTAACAGAAAACAATGGCATGTTTTTGTTGTTCTATTtagattt
ttaataattttcatttttcacataTACAATATTTTTGGAACCTATTTTTT
AACCTTTAATCAGTTCCTCTTACCTACTGTTTTTTATTACACCGGCGNCA
TTTTTCACATATACAATATTTTTGGAACctattttttaacctttttactC
AGTTCCTCTTAACTACTGTTTTTTTATACCCACATACATATTATTTTAAT
GATATGAATTTTCAATTACATTTTGAATTCATATAATTGTGTAGACATCA
ATGGACATTGCAAGGGGAATGACCTTATCTTTCCAAAAAGATGAAGTTGC
AAG
Run BLAST on NCBI

transcript from alignment at scaffold_78:170910..177884+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072488 ID=TCONS_00072488|Name=TCONS_00072488|organism=Clytia hemisphaerica|type=transcript|length=6975bp|location=Sequence derived from alignment at scaffold_78:170910..177884+ (Clytia hemisphaerica)
aaattcctcagctacattatatgtacggaaaaggttttctccaggcTTTT TCAATCCCAGGATTAAACTATGAGGGCGGTTCCGCTCGCTATTTTCCTTT CAACATTGAGCCCCAGGATAATCAATGAAAGAGATTTTAATATTAATGTT GAAATGTGTATTTTTCCGATAAATTTAGATatatactcaacaaaaaataa ggtggttttaaacaaatctttgagaaattggcgtttctttttgttctaat atatgcaaatcacgtcgaaaaaagaatacatttccgcctttactttcact tttgctttcGTGCTACGCGAATCTGATTGGATAAACACCACTCGCTatca aattctgattggctgtaagtctttagcttcgggattctgattggattatT TCCCATGCCACGgctgaattttgattggttgaaactttCTGAACGTGAAT TCTGATcggatgaatacctgaaaagtaaacaatagtatgtaagtattttg cttatcaaaatctaaagatttccagggggctttatttactttgtatgaTG ATAATTAAGCCTACAATGAAGCACCcagttttcagagcatgtcGTGGTTG CCCCCAAGGAAAAATTTCCAACATAAAACTCTGCCCCTAAGATCCGTTTC CCACCACAAAAAAAGGCAGAAAAACAGGTAAATATAGCcagttttcaatg attttgccCCTGAACTGtagatattatcaaaattttgcccCTGCCCTTGA AAAGTAAGCAATCTCTGCCCTCGAGATCTCGATGATTTCTGCCATGCTCT GAAAACTGGTGAAGCACCAAGAAAAAAAACCAACATAGAACAGGTAATAA GACCTTATGCTAAAAACGAAACCCATTACggcaaaaatttctcaaaaata gcaattttcgtAGTActtcaaatattgatacttgactgtactggTTTTTT AAGCTAGGGGGGGGGCAATAGTCGTTTGGAAGACTTATGGCTATATTGAt tattagaacaataaaagatgggtGCCGCATGCAAGGGTagtggaaaacac cccctgataataatagggttaaaaagttaaaaatcaaattgaaagcTTTA CTGTAGTAACTGGGAGGATAAAAaggaaaagaacaaaaagtcaAACAAAA ATGAAGGAGAAGTTGACTAAATGGCTATCACAAGTTGTACAAATCAGAAG TTTCTTAAAActgctttttaatcaaaaattgacTTTATGAACTgtcaatt ttagaatttttgctttgtacatttttgaaaatgcatCGCAAATCACAAAA AACTATACGTTAATTTAATCACtgcttttttaagaaagaattattttcaa attttaagtatTTGGAGcaagttaccaacttttctatGTTCTAATTTTTA ATGCACCTGCATTCAGTTTTACTGTAGTAACTGGGATGACCTTTAGATAA AAAGGAAAAGACAAAAAGTCAAACAAAAGTGGCTTTGCTAAAGAAAGAGG AGGCAGGAAGGAGCAGGCCTTAGCAATTTTCAGTAAGGACAGTCCTGGGA AATGGAGGAGATCGAAAGtttcttttcttcaaatatattttcttttaaaa gctgTGACAATTCTTTACAAATGAGATAAAGAGAGAAAATCTTGTGGAGC TAACATCTATGATAATAAAATGCAAGAGGGCCTCAAATGAGGAACATGAA CACAGGAAACTTCAAACACTTCTTGCAAGTTATTGAACACAGTTCAAGTC ATTCCCTCACAATGTGAAATTGATATGCTTGAAAACGGTAAGGAAAAACA AAACCATTGGTGAAAATATGTATTAAAATTAAAAGAgataatttgaagat aaaaaggATTATGAGGAAATGTTCAGTATTATATACTTTTCTACACAATG TATAATTGGGTTCAATGTTTTTTCATACTGGCTCCTGTGTTCCCAGATTG TCATTTAATTGCCAACCATAAGGCTGAGTGTGGGACATTTGGTGAGAGTT TTACATTGAACatagcttctttttttttgaaatgtgaaaaaaatttagCA GGAAGCTAAGCtaacaaatcaaaattgaaatttaaaatttgttttttccc CATTAATTTTTCAGACCACTTCCAATCAGGAGGGAGGATCAAAATCATGT GATTCATGCTCAAAAAGAAGCTGTACCATTATAATCATTGTGCTTGCTGT TCTATGTTGTTGTCTCATATCCGTAGCCATCTATCTTGGAGTCAAATCGA CCAAAACATCATTGAAACCTAGTACCTTGAATAATGGGTTACAATTCTTT CAAGTATCGGATACCCATCTTGATATTTATTACAATGATAAAGTTGATGG TTTGAATGGGCAGTTATGTAGATCAATGAATCAAACAGGCGGATATAAAG TCAATTTTACAGAAGGATCAGCTCCTTATGGGAGAGTGCATTGTGATTCA CCGTACAAGTTGGTTCAATCATCAGCAGATTACATTGGAACACTAAATGA AGAGTCTAATGTAAAAGCGCAATTCATTTTATTGTCAGGTAACTGCTTTG ATAATGTGGTTCATTTCTGAATTTAAGAAGGAATTGCAAAATTTCAGTAT GTAACAAAtctataaataaattttgtaaagcTCACTTTTACTGGAAATGG CAAATcagctcagcattgttctttaAGTTTTTCTTAGTTTCTGAGCCCCg tttttctaataaaattgttatttaaaaaacagtcttaaagaGTTTCACAA AccatcacttttttttttaatttaaaatgcAAGGTGTGTTACTGTGTACA GTATGGGGggtaacattttctttgttctcattgttgtttttatttaaagg tGACCAAGCAGCTCATGCTTACTCTAAATTTCCTGAAGTGGATGCATACA AAAGTTTAGTGTGGTCAATTGTCAACAGCACAAGAATCTTCTATGAGGCT ACTGGTTTGCCAATCATTTTCAGCATTGGTATGTTTGTTGTCTTTTTGGT CAATAAGCTTTTGTCAATTTCTACATAGCAAGTTTTTCTTAAAGTATGTA AAATTCATAATGTTTGAATCTTCCTAATTCAAGTTATatcattttaattt tcatattttattgtACTTTTTTGCAGGAAACAATGATATCCCCCTTCATT ATAATCCACCAGTTGAACACCCTGAGTCGTTTTATGGAGACCTATCAAAG GAAGTAACCAAGTACATCTTTCCAAAGAGCTCTGTGTTGGCTGAATTGAA CAGTGTCAAAGAATTCAATGAATCCTTTCTACAAGGGGGTTATTATGCTG CCAATGTTTCAGGTAAGAAATTTTGGAACAATGTTTCACAAAATTATAGt aaacaaaaattgataaaaaacaaacagattTTTTCCTAGGTTATCCAGTA GATGTCTGATTTGTCAGGTATGGAAAGGTTGTATAATCAACCAGTGAAAC AAAGCTAACAAATTTTGCAAATGTTAGAAAGTTTGTAAGCAATAAATCAA ATAAACCTAATGCACAGATCTGGGACTTTTATAAGAGTGTGGGAAATCAA TATCTTGGAGGGCCTAAAACTGTCAGGCCTTAACTTCACTGGCAGCTAAA TTTTCGTAGGAGAGCTTTAGGCCATAACACTCCTGAAATTATAGCGATTA TAGTAATGAAAACCATTGTAAGAAATTTTGATTATGTTATTATTATAGAA GCTATATAgcaacttttcaatatattccTTATAGAATTTCTACAACTCAT CACGTTGAGTACAAACTATTGGAACTCACGATGCTTTACANCAAACAGGC GGATATAAAGTCAATTTTACAGAAGGATCAGCTCCTTATGGGAGAGTGCA TTGTGATTCACCGTACAAGTTGGTTCAATCATCGGCAGATTACATTGGAA CACTAAATGAAGAGTCTAATGTGAAAGCGCAATTCATTTTATTGTCAGGT AACTGCTTTGATAATGTGGTTCATTTCTGAATTTAAGAAGGAACTGCAAA ATTTCAGTATGTAACAAAtctataaataaattttgtaaagcTCACTTTTA CTGGAAATGGCAAATcagctcagcattgttctttaAGTTTTTCTTAGTTT CTGAGCCCCgtttttctaataaaattgttattcaaaaaacagtcttaaag aGTTTCACAAAccatcacttttttttttaatttaaaatgcAAGGTGTGTT ACTGTGTACAGTATATGGGGggtaacattttctttgttttcattgttgtt tttatttaaaggtGACCAAGCAGCTCATGCTTACTCTAAATTTACTGAAG TGGATGCATACAAAAGTTTAGTGTGGTCATGTTCTCTTTTTGGTCAATAA GCTTTTGTCAATTTCTACATAGCAAGTTTTTCTTAAAGTATGTAAAATTC ATAATGTTTGAATCTTCCTAATTCAAGTTATatcattttaattttcatat tttattgtACTTTTTTGCAGGAAACAATGATATCCCCCTTCATTATAATC CACCAGTTGAACACCCTGAGTCGTTTTATGGAGACCTATCAAAGGAAGTA ACCAAGTACATCTTTCCAAAGAGCTCTGTGTTGGCTGAATTGAACAGTGT CAAAGAATTCAATGAATCCTTTCTACAAGGGGGTTATTATGCTGTCAATG TTTCAGGTAAGAAATTTTGgaacaatttttcacaaaattatagtaaacaa aaattgataaaaacaacCAGATTTTTTCCTAGGTTATTCAGTAGATGTCT GATTTGTCAGGTATGGAAAGGTTGTATAATCAACCAGTGTAACTAAGCTA ACAAATTTTGCAAATGTTAGAAAGTTTGTAAacaataaatcaaaataaac ctAATGCACAGATCTGGGACTTTTATAAGAGTGTGGGAAATCAATATCTT GGAGGGCCTAAAACTGTCAGGCCTTAAACTTCACTGGCAGCTAAATTTTC GTTGGAGAGCTTTAGGCCATAACACTCCTGAAATTATAGCAGTTATAGTA ATGAAAACCACTGTAAGAAATTTTGATTATGTTATTATTCCAGAAGCTAT ATAgcaacttttcaatatattccTTATAGAATTTCTGCAACTCATCACGT TGAGTACAAACTATTGGAACTCAAGATGCTTTACAATCAATCCAAGTATT ACCACCATTGGTGATCGCCAAATGAAATGGCTGGAAAACACTCTCAAAAC TGCTGCAGCAACgaacaaaaaagttttggtcTCAGGACACATCCCAGCAG GGTAAAGATTCCTTTTCGACTTTCTTTAGAATTGTTATAAAGTTGGAAAA ATATTCATTGACAACGGTAAAATTTCCCCATTTACATACAATGTATTTGG ATTGGGGAGAAAATACTTAGCCATTCGTCtcagaaaatcatgaaaaacat tattGTGCAATTAGGAAAATACTTATAtctaaattttctcaaaattactA AAAAACAGACTTTGGCCggttttgataaaattctttcaatttctATAGTA TTTCAACTTACAAAGATGAAGGGagtttttggttaaaaaattacaCAACA GTTTACGTCAAACTCATGACTGATTTTGCAGACATTATAACAGGTAAGAA TGTTActtaaaaatcaatgaaaacaaGAGCTTTTGCAAATcaattgaaat tgatttttaaaggtTCAAGAGAAATAAAGAGCGGTGGATAGGGAAATTGA TTcttttccaaataaaataaaagctttGTTTCTATTTCAGGGCAGTTTTA TGGACATGCACATAAAGACaagatcaaaattcaaaacgttCACGATTCTT TCTATCCAAATACACAACCTTCAATACCAAAGGCTTTTCTTTTGATGTCT CCAAGCATTACACCCATCCAAGGAAATAATGCAGCCTTTCGTTTGTTTAC TTTGAGTAAAGATCTTGAGCTGTCTGATTATACACAATATTATATGGATT TTATACTTGCTAATGGTAAGAAAAAATAGTTCTTGcaccaatttatttat ttattttcacccaCTATTTTATCCTTATTTTGATTTGACTGCCTTTTTGA CTAAAGTTTCCCAATAAATCTTTGCAATTTAAGTTTAACATTTATAAAAA TGGCTTCCTTTTTTAATACCAGTTTTGAGAAGAGAAtgtcttaaaatttt cttccatctcTTTCTTTACGATGACACCATTGTCCATTAgcattttgtat tttaaaactttacatATTAGTTTGGACACTGGTTTTGTTATTGCAATGNA gcattttgtattttaaaactttacatATTAGTTTGGACACTGGTTTTGTT ATTGCAATGAATGGTAACTATCTTTCATATCCtttttcagtattttcaaa GCCTTCATGGAAAAAAGAATACACGTTCTCTGAATGTTATGGGGCTAGCA TCTCAGCAAAATCCATCCAAGATATTGTACAGAATTTCATCTCCTCATCT GACAACTCAACCTGGGTACGTTACATGACCCATATGAGAACGTTGTATGG TGGTTTTTCAACTGAAGTTATGTTCAGAGAGTATTGCGGTGCACAACATT TTACTTTGGAAGCTTACTTAGCTTGTGTGAAATATTATGAGACCAATGGA TTTTGAATCCATTGGTTTTTGTGAGTAACTAACAGAAAACAATGGCATGT TTTTGTTGTTCTATTtagatttttaataattttcatttttcacataTACA ATATTTTTGGAACCTATTTTTTAACCTTTAATCAGTTCCTCTTACCTACT GTTTTTTATTACACCGGCGNCATTTTTCACATATACAATATTTTTGGAAC ctattttttaacctttttactCAGTTCCTCTTAACTACTGTTTTTTTATA CCCACATACATATTATTTTAATGATATGAATTTTCAATTACATTTTGAAT TCATATAATTGTGTAGACATCAATGGACATTGCAAGGGGAATGACCTTAT CTTTCCAAAAAGATGAAGTTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044984XLOC_044984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072488-exon-scaffold_78-1491911889:170910..172696TCONS_00072488-exon-scaffold_78-1491911889:170910..172696Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:170910..172696TCONS_00072488-exon-scaffold_78-1510915933:170910..172696Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:170910..172696TCONS_00072488-exon-scaffold_78-1575043694:170910..172696Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:173024..173447TCONS_00072488-exon-scaffold_78-1491911889:173024..173447Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:173024..173447TCONS_00072488-exon-scaffold_78-1510915933:173024..173447Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:173024..173447TCONS_00072488-exon-scaffold_78-1575043694:173024..173447Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:173759..173887TCONS_00072488-exon-scaffold_78-1491911889:173759..173887Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:173759..173887TCONS_00072488-exon-scaffold_78-1510915933:173759..173887Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:173759..173887TCONS_00072488-exon-scaffold_78-1575043694:173759..173887Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:175380..175565TCONS_00072488-exon-scaffold_78-1491911889:175380..175565Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:175380..175565TCONS_00072488-exon-scaffold_78-1510915933:175380..175565Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:175380..175565TCONS_00072488-exon-scaffold_78-1575043694:175380..175565Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:175989..176160TCONS_00072488-exon-scaffold_78-1491911889:175989..176160Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:175989..176160TCONS_00072488-exon-scaffold_78-1510915933:175989..176160Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:175989..176160TCONS_00072488-exon-scaffold_78-1575043694:175989..176160Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:176408..176502TCONS_00072488-exon-scaffold_78-1491911889:176408..176502Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:176408..176502TCONS_00072488-exon-scaffold_78-1510915933:176408..176502Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:176408..176502TCONS_00072488-exon-scaffold_78-1575043694:176408..176502Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:176650..176874TCONS_00072488-exon-scaffold_78-1491911889:176650..176874Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:176650..176874TCONS_00072488-exon-scaffold_78-1510915933:176650..176874Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:176650..176874TCONS_00072488-exon-scaffold_78-1575043694:176650..176874Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1491911889:177250..177884TCONS_00072488-exon-scaffold_78-1491911889:177250..177884Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1510915933:177250..177884TCONS_00072488-exon-scaffold_78-1510915933:177250..177884Clytia hemisphaericaexon
TCONS_00072488-exon-scaffold_78-1575043694:177250..177884TCONS_00072488-exon-scaffold_78-1575043694:177250..177884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:170910..177884 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.71222 6.89273 5.6618 4.32751 11.0433 8.16999 7.09876 6.03138 4.90133 4.81742 5.06836 3.91014 3.40201 3.2357 4.66185 3.42134 3.15245 2.84321 2.69578 3.03163 3.10588 3.02222 5.48478 4.76463 3.32822 4.67654 3.53588 2.76944 4.10393 5.54813
Blast
BLAST of TCONS_00072488 vs. Swiss-Prot (Human)
Match: ASM3A (Acid sphingomyelinase-like phosphodiesterase 3a OS=Homo sapiens GN=SMPDL3A PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 5.298e-31
Identity = 108/430 (25.12%), Postives = 197/430 (45.81%), Query Frame = 3
Query: 1965 QFFQVSDTHLDIYYNDKVDGLNGQLCRSMNQTGGYKVNFTEGSAPYGRVHCDSPYKLVQSSADYIGTLNEESNVKAQFILLSGDQAAHAYSKFPEVDAYKSLVWSIVNSTRIFYEATGLPIIFSIGNNDIPLHYNPPVEHPESFYGDLSKEVTKYIFPKSSVLAELNSVKEFNESFLQGGYYA--VNVSEFLQLITLSTN-YWNSRCFTINPSITTIGDRQMKWLENTLKTAAATNKKVLVSGHIPAGISTYKDEGSFWLKNYTTVYVKLMTDFADIITGQFYGHAHKDKIKIQNVHDSFYPNTQPSIPKAFLLMSPSITPI------QGNNAAFRLFTLS-KDLELSDYTQYYMDFILANVFSKPSWKKEYTFSECYG-ASISAKSIQDIVQNFISSSDNSTWVRYMTHMRTLYGGFSTEVMFREYCGA 3221
            QF+ V+D HLD  Y+   D  + ++C S                P+G V CDSPY+L+ S+ D+I    +E    A F++ +GD   H        D   +++ ++  + +  +    L +  ++GN+D    Y P  + P          VT  ++   + L +    +E   +  +GG+Y+  V  +  L++I+L+TN Y+     T+N    T    Q +WLE+TL  +    +KV +  H+P G        +   + Y    + +   ++D+I GQFYGH H+D I +         + +   P   L ++P++TP+      Q NN   RLF    +D +L D  QYY++   AN+  +  WK EY  ++ Y    +  +S+  + + F +  D+  +++Y  +    +  + + V   + C A
Sbjct:   39 QFWHVTDLHLDPTYHITDD--HTKVCASSKGANA------SNPGPFGDVLCDSPYQLILSAFDFIKNSGQE----ASFMIWTGDSPPHVPVPELSTDTVINVITNMTTTIQSLFP--NLQVFPALGNHD----YWPQDQLPV---------VTSKVYNAVANLWKPWLDEEAISTLRKGGFYSQKVTTNPNLRIISLNTNLYYGPNIMTLN---KTDPANQFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAGQFYGHTHRDSIMVL--------SDKKGSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQYDPRDYKLLDMLQYYLNLTEANLKGESIWKLEYILTQTYDIEDLQPESLYGLAKQF-TILDSKQFIKYYNY---FFVSYDSSVTCDKTCKA 426          
The following BLAST results are available for this feature:
BLAST of TCONS_00072488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASM3A5.298e-3125.12Acid sphingomyelinase-like phosphodiesterase 3a OS... [more]
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