|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072487 ID=TCONS_00072487|Name=TCONS_00072487|organism=Clytia hemisphaerica|type=transcript|length=3653bpRun BLAST on NCBI transcript from alignment at scaffold_78:170910..177884+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072487 ID=TCONS_00072487|Name=TCONS_00072487|organism=Clytia hemisphaerica|type=transcript|length=6975bp|location=Sequence derived from alignment at scaffold_78:170910..177884+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072487 vs. Swiss-Prot (Human)
Match: ASM3A (Acid sphingomyelinase-like phosphodiesterase 3a OS=Homo sapiens GN=SMPDL3A PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 4.403e-31 Identity = 113/431 (26.22%), Postives = 199/431 (46.17%), Query Frame = 3
Query: 1965 QFFQVSDTHLDIYYNDKVDGLNGQLCRSMNQTGGYKVNFTEGSAPYGRVHCDSPYKLVQSSADYIGTLNEESNVKAQFILLSGDQAAHAYSKFPEVDAYKSLVWSIVN-STRIFYEATGLPIIFSIGNNDIPLHYNPPVEHPESFYGDLSKEVTKYIFPKSSVLAELNSVKEFNESFLQGGYYAANVS--EFLQLITLSTN-YWNSRCFTINPSITTIGDRQMKWLENTLKTAAATNKKVLVSGHIPAGISTYKDEGSFWLKNYTTVYVKLMTDFADIITGQFYGHAHKDKIKIQNVHDSFYPNTQPSIPKAFLLMSPSITPI------QGNNAAFRLFTLS-KDLELSDYTQYYMDFILANVFSKPSWKKEYTFSECYG-ASISAKSIQDIVQNFISSSDNSTWVRYMTHMRTLYGGFSTEVMFREYCGA 3221
QF+ V+D HLD Y+ D + ++C S P+G V CDSPY+L+ S+ D+I +E A F++ +GD H PE+ +++ I N +T I L + ++GN+D Y P + P VT ++ + L + +E + +GG+Y+ V+ L++I+L+TN Y+ T+N T Q +WLE+TL + +KV + H+P G + + Y + + ++D+I GQFYGH H+D I + + + P L ++P++TP+ Q NN RLF +D +L D QYY++ AN+ + WK EY ++ Y + +S+ + + F + D+ +++Y + + + + V + C A
Sbjct: 39 QFWHVTDLHLDPTYHITDD--HTKVCASSKGANA------SNPGPFGDVLCDSPYQLILSAFDFIKNSGQE----ASFMIWTGDSPPHV--PVPELST-DTVINVITNMTTTIQSLFPNLQVFPALGNHD----YWPQDQLPV---------VTSKVYNAVANLWKPWLDEEAISTLRKGGFYSQKVTTNPNLRIISLNTNLYYGPNIMTLN---KTDPANQFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAGQFYGHTHRDSIMVL--------SDKKGSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQYDPRDYKLLDMLQYYLNLTEANLKGESIWKLEYILTQTYDIEDLQPESLYGLAKQF-TILDSKQFIKYYNY---FFVSYDSSVTCDKTCKA 426 The following BLAST results are available for this feature:
BLAST of TCONS_00072487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.