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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072482 ID=TCONS_00072482|Name=TCONS_00072482|organism=Clytia hemisphaerica|type=transcript|length=2838bpRun BLAST on NCBI transcript from alignment at scaffold_78:133209..159760+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072482 ID=TCONS_00072482|Name=TCONS_00072482|organism=Clytia hemisphaerica|type=transcript|length=26552bp|location=Sequence derived from alignment at scaffold_78:133209..159760+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072482 vs. Swiss-Prot (Human)
Match: ASM3A (Acid sphingomyelinase-like phosphodiesterase 3a OS=Homo sapiens GN=SMPDL3A PE=1 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 3.232e-38 Identity = 114/449 (25.39%), Postives = 213/449 (47.44%), Query Frame = 1
Query: 337 KFYQVSDTHLDIYYNEKVNGLNWQMCRAIKRKNGYKVNYTEGAAPYGRIKCDSPYKLLQSSADFIGNLNRDTKAEFVILSGDQSAHA-YSSFEVDAYKSIVWSIVNSTRIFYEATGLPIIFSIGNNDLPVHYNPPTENPDL---FYGDLVNELRKYIFPKATVMSELNSPKDFNETFLQGGYYVAHVS--ELVQIITLNTNYWNTKCFKNNPNITYIGDM----QIKWLENSLNNASKSNKRVIVTGHIPPGVSTYGNEGSYWLKNYTTKYIQLVSNYSDIIIGQLYGHAHKDKIKIQNVHDSFYPNTQLSIPKAFLLMSPSITPI------EENNAAFRMFTLS-KDLELSDYTQYYMDFTLANAHGEALWEKEYTFSECYGAR-ISMKAIQGIVQNLVTFKNSTWVRYMTHMKSNYGGILT-ENIFKEY--CSAQHVTLDAYLDCVK 1620
+F+ V+D HLD Y+ + + ++C + K N P+G + CDSPY+L+ S+ DFI N ++ A F+I +GD H D +++ ++ + + + L + ++GN+D Y P + P + Y + N + ++ +A T +GG+Y V+ ++II+LNTN + PNI + Q +WLE++LNN+ ++ ++V + H+P G + + Y K I + YSD+I GQ YGH H+D I + + + P L ++P++TP+ + NN R+F +D +L D QYY++ T AN GE++W+ EY ++ Y + +++ G+ + + +++Y + +Y +T + K + C+ ++ +Y DC+K
Sbjct: 39 QFWHVTDLHLDPTYH--ITDDHTKVCASSKGANA------SNPGPFGDVLCDSPYQLILSAFDFIKNSGQE--ASFMIWTGDSPPHVPVPELSTDTVINVITNMTTTIQSLFP--NLQVFPALGNHD----YWPQDQLPVVTSKVYNAVANLWKPWLDEEAI------------STLRKGGFYSQKVTTNPNLRIISLNTNLYY------GPNIMTLNKTDPANQFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAGQFYGHTHRDSIMVL--------SDKKGSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQYDPRDYKLLDMLQYYLNLTEANLKGESIWKLEYILTQTYDIEDLQPESLYGLAKQFTILDSKQFIKYYNYFFVSYDSSVTCDKTCKAFQICAIMNLDNISYADCLK 445 The following BLAST results are available for this feature:
BLAST of TCONS_00072482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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