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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072479 ID=TCONS_00072479|Name=TCONS_00072479|organism=Clytia hemisphaerica|type=transcript|length=2432bp
CCTTGCTTCAAGCAGAGTATAAACCGGGTATTAATTTTAGAATTGTTACA
GTTTCAGGTAGatcaaaatgttttaatttccGTCAAATGACAATCTTCCA
CAATGAAACAAAGAGCTACAAACGCAACAAGCAAAATGGAGCAAGAAGCT
TTACTACCCCCGTCTGCTATCGATGAAAGCTTCCCATCAGATAGTGAATT
CTCAACAACTGGCTCCGTATCGGGCGCCACTGATAAGGCCAAGAAACGAG
GTGCCGAGAATATTTTTCAAGCAATCAATCTCTTGTTAAGAAGAAACACT
GGAGAAGATGGAAGCCTTGCAATTAGCACCGCTTTTTTAATTATGGTTTC
AATGTCGTATGGGTCAGCAGTGATTATTTTACCGTACACGCTACAGCAAT
TAGGTCCATTGCTTTGGTTGCTTTTCACCGTGGGTTGTTTCCTTATTCTG
GCTTTTTGCGCGGTGATGTTGAAGGAATCATGTGTTCACATTATGTTGTT
TGGTAAAGATCGCATCTCACGATCACTTCTCGTGCGCCGACCGTACCCGA
CAATTGCCGAATATTCAGTCGGGAAACGATTCTCAAAAGTCGTTGAAGCG
ACTATGTATGTCGCACTGGGAGCTGAAGTGTTAGCTTATGGTTTACTTGG
GGCAACTTCTATGAACAGAGTGATTCCATTATGGCTTGAAGGGGATGATA
GAATCAGAATTTGGCTTTTGATCGGATTTTTTGTTATGCTTCCATTCATG
ATGGTTGGAACGTATTCTGATTTAACAATGCCGGCTTTCGTTGCTGTATT
TACGTCGTTTCTGGCTTCACTGTGTATCTTTATCGTATCGGTAGTGGCAA
AATATTACTATGGTGCACGAACATCAAGCTATAAGACAATAACATTAGTC
AAAGAGGAacatatttttaagatttttggtgAGATTTTGTTCGCAGCTGC
CGGTCCTGCCCTCTTGTTACCTAATATTGTTGTCCTATTAAAGAAACCGG
AGAAGTTTCAAACGCCCATCTTGTTCAGTCATCTATGTGTCGTTCTTTTA
TACGCCCTACTGGCAATTGTACCATTCATCATTTTCGGACAAACGGTTGA
AGCAAGCATAATAGATACTTTACAAGATGCTATCTTAGCTTTGAAAATGA
GTCCGGTCTGGCTTTCTGTCATTACCCTTGCTTCGATTTCATTGGCTATC
CATTTTACAATGGTGACAGTGCTTTGTGCCAATccaatttttcttaattt
ggAGAATAAATTCAACATACCGTCAGagTTTACATGGAAAAGGTTTGCAC
TTCGCTCATCAATCGCTTTAGCATTTGTATTGGTTGATATCATGATCCCT
TACTTCTCACCTGTCATCTCTATCGTCGGCGCACTACCGCTCGCTCTGCT
TTGTATTATCTATCCTATCATTGTTTACTTTCATACGTTCGAAAAGAAAT
CGAATTACATGAAACTTTTCCTTGGATTTGTTTTATGTTTAACTTTCGCA
TTGATGATTGGGAACACGATATTCAGTATTTGGGatattgttgtttattt
tgaattgcCATCATTTAAAGCtgtcaaacattttggaaatcaaactGTCA
AAGACACGTGGCGAAAAGCTGCCCTGAGGAAAAACTTTACCTTCACTCAG
TCGTAGTACACATGGGTAAAGCACTGTGATTATTGGGGTAAATTCACGGT
CAAAAGATTATAtttaaagggattatcagatgatttttgatatttggctt
agGGATAACTTTTATGTCCTAATAGAAACacctccaaagtttttgaccaa
attatttttcaaagattagattagatttcaaagtcaaatatctcaGATTC
GGAAAAATATTGGGTCAAAAGATTTAGAGGTGTCTCTCTGGACCATAAAA
GGTATATCCAagccaaatataaaaaatcatctgGTAATCCCTTTAAAGCT
TTCTACCGTAAATTCATCTAAAAGATCATgtgaaatttgccattttttcc
TTAATTTTCCGGGGTAAGAAAGGGTTTTATTTTgcccaaatttagaaatt
ttaaaatatatataattttcaatTGGTTTTTAAATTAGAATATTTGCTGA
CTCGTCAAgtcttttgagtttttttatttgaacaaTTAAATATGAAATGT
TAGTGAAGTCGATGAATTGTATCTGAATGCGCAAAATTGAACGCTTTGAA
CAAAGAAACCAAGTACAAGTTtggaattttattatttgtagGATCAGGGG
CTTAGGTATATTATGCATATTTATAATTCTACAAAACGTTCAGGAAAGTA
TTCATCTGCTTTATTTAGTAACAATTCTCTTATAGTTTCTTGGCAAATAA
GATTTAGTTTCGCGGAAAAATTATGGGTTCCTCAGCTATGTTCTCTCGGC
TGCCTAAAGTCATGTCAACTTCTTCTTTAAAG Run BLAST on NCBI protein sequence of TCONS_00072479-protein >TCONS_00072479-protein ID=TCONS_00072479-protein|Name=TCONS_00072479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MKQRATNATSKMEQEALLPPSAIDESFPSDSEFSTTGSVSGATDKAKKRG
AENIFQAINLLLRRNTGEDGSLAISTAFLIMVSMSYGSAVIILPYTLQQL
GPLLWLLFTVGCFLILAFCAVMLKESCVHIMLFGKDRISRSLLVRRPYPT
IAEYSVGKRFSKVVEATMYVALGAEVLAYGLLGATSMNRVIPLWLEGDDR
IRIWLLIGFFVMLPFMMVGTYSDLTMPAFVAVFTSFLASLCIFIVSVVAK
YYYGARTSSYKTITLVKEEHIFKIFGEILFAAAGPALLLPNIVVLLKKPE
KFQTPILFSHLCVVLLYALLAIVPFIIFGQTVEASIIDTLQDAILALKMS
PVWLSVITLASISLAIHFTMVTVLCANPIFLNLENKFNIPSEFTWKRFAL
RSSIALAFVLVDIMIPYFSPVISIVGALPLALLCIIYPIIVYFHTFEKKS
NYMKLFLGFVLCLTFALMIGNTIFSIWDIVVYFELPSFKAVKHFGNQTVK
DTWRKAALRKNFTFTQS Run BLAST on NCBI transcript from alignment at scaffold_78:70632..73928+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072479 ID=TCONS_00072479|Name=TCONS_00072479|organism=Clytia hemisphaerica|type=transcript|length=3297bp|location=Sequence derived from alignment at scaffold_78:70632..73928+ (Clytia hemisphaerica)
CCTTGCTTCAAGCAGAGTATAAACCGGGTATTAATTTTAGAATTGTTACA
GTTTCAGGTAGatcaaaatgttttaatttccGTCAAATGACAATCTTCCA
CAATGAAACAAAGAGCTACAAACGCAACAAGCAAAATGGAGCAAGAAGCT
TTACTACCCCCGTCTGCTATCGATGAAAGCTTCCCATCAGATAGTGAATT
CTCAACAACTGGCTCCGTATCGGGCGCCACTGATAAGGCCAAGAAACGAG
GTGCCGAGAATATTTTTCAAGCAATCAATCTCTTGTTAAGAAGAAACACT
GGAGAAGATGGAAGCCTTGCAATTAGCACCGCTTTTTTAATTATGGTTTC
AATGTCGTATGGGTCAGCAGTGATTATTTTACCGTACACGCTACAGCAAT
TAGGTCCATTGCTTTGGTTGCTTTTCACCGTGGGTTGTTTCCTTATTCTG
GCTTTTTGCGCGGTGATGTTGAAGGAATCATGTGTTCACATTATGTTGTT
TGGTAAAGATCGCATCTCACGATCACTTCTCGTGCGCCGACCGTACCCGA
CAATTGCCGAATATTCAGTCGGGAAACGATTCTCAAAAGTCGTTGAAGCG
ACTATGTATGTCGCACTGGGAGCTGAAGTGTTAGCTTATGGTTTACTTGG
GGCAACTTCTATGAACAGAGTGATTCCATTATGGCTTGAAGGGGATGATA
GAATCAGAATTTGGCTTTTGATCGGATTTTTTGTTATGCTTCCATTCATG
ATGGTTGGAACGTATTCTGATTTAACAATGCCGGCTTTCGTTGCTGTATT
TACGTCGTTTCTGGCTTCACTGTGTATCTTTATCGTATCGGTAGTGGCAA
AATATTACTATGGTGCACGAACATCAAGCTATAAGACAATAACATTAGTC
AAAGAGGAacatatttttaagatttttggtgAGATTTTGTTCGCAGCTGC
CGGTCCTGCCCTCTTGTTACCTAATATTGTTGTCCTATTAAAGAAACCGG
AGAAGTTTCAAACGCCCATCTTGTTCAGTCATCTATGTGTCGTTCTTTTA
TACGCCCTACTGGCAATTGTACCATTCATCATTTTCGGACAAACGGTTGA
AGCAAGCATAATAGATACTTTACAAGATGCTATCTTAGCTTTGAAAATGA
GTCCGGTCTGGCTTTCTGTCATTACCCTTGCTTCGATTTCATTGGCTATC
CATTTTACAATGGTGACAGTGCTTTGTGCCAATccaatttttcttaattt
ggAGAATAAATTCAACATACCGTCAGGTAAAGTTTTTTTCGTTTTGTGAG
AAGATTTCTTCCACCATTTTCATATCCAAAATGACTTCCAATCTTCCAAT
GTAGTatacaaatttcaaatcttaATATCAACAAGGCCAAGCCAATTGAA
CCAGCGAANCCaggtaaagtttttttgttttgagagaAGATTTCTTCCAc
cattttcatttccaaaatGACTTCCAATCTTCCAATGTAGTATACGAATT
TCAAATCTTAATATCAACAAGGCCAAGCCAATTGAACCAgcgaaaattgc
caaaattgaccCATCAAAGAATCAAATCTCATCCATCTCAGTTGGACTTA
AGAGACTGAAAATCGGAGTTGAAAACCTTCCATCAGGACAAGATTCAGTT
CGCAAACATCGGAAGAATTAATATTTATCCATTGAAAATTTGTCCACTTA
AATTATAAAAGTGTCCTCTCTATCTCTTTTAGGGaatggtcagaaagtat
ctactaggtgGCGTGgagcatattttcaaaaaattccaaaaaaaattccc
attTGATACCATCAAAAAATTTGAGGCAATTTATTTTTGGCACCTCCCTC
CGAATATAAAACCCCTCCCTaaagacatgaaatttttttgagacaGCCCC
TAAGCTGGGAAAAGTTTTTGACACCCCTCGAATCCACCCctcccctagta
gatactttctgaccattCCCTTACCATAAggaattttaatcaaaattctt
tcattgtttttatagagTTTACATGGAAAAGGTTTGCACTTCGCTCATCA
ATCGCTTTAGCATTTGTATTGGTTGATATCATGATCCCTTACTTCTCACC
TGTCATCTCTATCGTCGGCGCACTACCGCTCGCTCTGCTTTGTATTATCT
ATCCTATCATTGTTTACTTTCATACGTTCGAAAAGAAATCGAATTACATG
AAACTTTTCCTTGGATTTGTTTTATGTTTAACTTTCGCATTGATGATTGG
GAACACGATATTCAGTATTTGGGatattgttgtttattttgaattgcCAT
CATTTAAAGCtgtcaaacattttggaaatcaaactGTCAAAGACACGTGG
CGAAAAGCTGCCCTGAGGAAAAACTTTACCTTCACTCAGTCGTAGTACAC
ATGGGTAAAGACACTGTGATTATTGGGGTAGATTCACGGTCAAAAGATTA
TAtttaaagggattatcagatgatttttgatatttggcttagGGATAACT
TTTATGTCCTAATAGNTGTAGTACACATGGGTAAAGCACTGTGATTATTG
GGGTAAATTCACGGTCAAAAGATTATAtttaaagggattatcagatgatt
tttgatatttggcttagGGATAACTTTTATGTCCTAATAGAAACacctcc
aaagtttttgaccaaattatttttcaaagattagattagatttcaaagtc
aaatatctcaGATTCGGAAAAATATTGGGTCAAAAGATTTAGAGGTGTCT
CTCTGGACCATAAAAGGTATATCCAagccaaatataaaaaatcatctgGT
AATCCCTTTAAAGCTTTCTACCGTAAATTCATCTAAAAGATCATgtgaaa
tttgccattttttccTTAATTTTCCGGGGTAAGAAAGGGTTTTATTTTgc
ccaaatttagaaattttaaaatatatataattttcaatTGGTTTTTAAAT
TAGAATATTTGCTGACTCGTCAAgtcttttgagtttttttatttgaacaa
TTAAATATGAAATGTTAGTGAAGTCGATGAATTGTATCTGAATGCGCAAA
ATTGAACGCTTTGAACAAAGAAACCAAGTACAAGTTtggaattttattat
ttgtagGATCAGGGGCTTAGGTATATTATGCATATTTATAATTCTACAAA
ACGTTCAGGAAAGTATTCATCTGCTTTATTTAGTAACAATTCTCTTATAG
TTTCTTGGCAAATAAGATTTAGTTTCGCGGAAAAATTATGGGTTCCTCAG
CTATGTTCTCTCGGCTGCCTAAAGTCATGTCAACTTCTTCTTTAAAG Coding sequence (CDS) from alignment at scaffold_78:70632..73928+ >TCONS_00072479 ID=TCONS_00072479|Name=TCONS_00072479|organism=Clytia hemisphaerica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_78:70632..73928+ (Clytia hemisphaerica)
ATGAAACAAAGAGCTACAAACGCAACAAGCAAAATGGAGCAAGAAGCTTT
ACTACCCCCGTCTGCTATCGATGAAAGCTTCCCATCAGATAGTGAATTCT
CAACAACTGGCTCCGTATCGGGCGCCACTGATAAGGCCAAGAAACGAGGT
GCCGAGAATATTTTTCAAGCAATCAATCTCTTGTTAAGAAGAAACACTGG
AGAAGATGGAAGCCTTGCAATTAGCACCGCTTTTTTAATTATGGTTTCAA
TGTCGTATGGGTCAGCAGTGATTATTTTACCGTACACGCTACAGCAATTA
GGTCCATTGCTTTGGTTGCTTTTCACCGTGGGTTGTTTCCTTATTCTGGC
TTTTTGCGCGGTGATGTTGAAGGAATCATGTGTTCACATTATGTTGTTTG
GTAAAGATCGCATCTCACGATCACTTCTCGTGCGCCGACCGTACCCGACA
ATTGCCGAATATTCAGTCGGGAAACGATTCTCAAAAGTCGTTGAAGCGAC
TATGTATGTCGCACTGGGAGCTGAAGTGTTAGCTTATGGTTTACTTGGGG
CAACTTCTATGAACAGAGTGATTCCATTATGGCTTGAAGGGGATGATAGA
ATCAGAATTTGGCTTTTGATCGGATTTTTTGTTATGCTTCCATTCATGAT
GGTTGGAACGTATTCTGATTTAACAATGCCGGCTTTCGTTGCTGTATTTA
CGTCGTTTCTGGCTTCACTGTGTATCTTTATCGTATCGGTAGTGGCAAAA
TATTACTATGGTGCACGAACATCAAGCTATAAGACAATAACATTAGTCAA
AGAGGAacatatttttaagatttttggtgAGATTTTGTTCGCAGCTGCCG
GTCCTGCCCTCTTGTTACCTAATATTGTTGTCCTATTAAAGAAACCGGAG
AAGTTTCAAACGCCCATCTTGTTCAGTCATCTATGTGTCGTTCTTTTATA
CGCCCTACTGGCAATTGTACCATTCATCATTTTCGGACAAACGGTTGAAG
CAAGCATAATAGATACTTTACAAGATGCTATCTTAGCTTTGAAAATGAGT
CCGGTCTGGCTTTCTGTCATTACCCTTGCTTCGATTTCATTGGCTATCCA
TTTTACAATGGTGACAGTGCTTTGTGCCAATccaatttttcttaatttgg
AGAATAAATTCAACATACCGTCAGagTTTACATGGAAAAGGTTTGCACTT
CGCTCATCAATCGCTTTAGCATTTGTATTGGTTGATATCATGATCCCTTA
CTTCTCACCTGTCATCTCTATCGTCGGCGCACTACCGCTCGCTCTGCTTT
GTATTATCTATCCTATCATTGTTTACTTTCATACGTTCGAAAAGAAATCG
AATTACATGAAACTTTTCCTTGGATTTGTTTTATGTTTAACTTTCGCATT
GATGATTGGGAACACGATATTCAGTATTTGGGatattgttgtttattttg
aattgcCATCATTTAAAGCtgtcaaacattttggaaatcaaactGTCAAA
GACACGTGGCGAAAAGCTGCCCTGAGGAAAAACTTTACCTTCACTCAGTC
GTAGATGAAACAAAGAGCTACAAACGCAACAAGCAAAATGGAGCAAGAAG
CTTTACTACCCCCGTCTGCTATCGATGAAAGCTTCCCATCAGATAGTGAA
TTCTCAACAACTGGCTCCGTATCGGGCGCCACTGATAAGGCCAAGAAACG
AGGTGCCGAGAATATTTTTCAAGCAATCAATCTCTTGTTAAGAAGAAACA
CTGGAGAAGATGGAAGCCTTGCAATTAGCACCGCTTTTTTAATTATGGTT
TCAATGTCGTATGGGTCAGCAGTGATTATTTTACCGTACACGCTACAGCA
ATTAGGTCCATTGCTTTGGTTGCTTTTCACCGTGGGTTGTTTCCTTATTC
TGGCTTTTTGCGCGGTGATGTTGAAGGAATCATGTGTTCACATTATGTTG
TTTGGTAAAGATCGCATCTCACGATCACTTCTCGTGCGCCGACCGTACCC
GACAATTGCCGAATATTCAGTCGGGAAACGATTCTCAAAAGTCGTTGAAG
CGACTATGTATGTCGCACTGGGAGCTGAAGTGTTAGCTTATGGTTTACTT
GGGGCAACTTCTATGAACAGAGTGATTCCATTATGGCTTGAAGGGGATGA
TAGAATCAGAATTTGGCTTTTGATCGGATTTTTTGTTATGCTTCCATTCA
TGATGGTTGGAACGTATTCTGATTTAACAATGCCGGCTTTCGTTGCTGTA
TTTACGTCGTTTCTGGCTTCACTGTGTATCTTTATCGTATCGGTAGTGGC
AAAATATTACTATGGTGCACGAACATCAAGCTATAAGACAATAACATTAG
TCAAAGAGGAacatatttttaagatttttggtgAGATTTTGTTCGCAGCT
GCCGGTCCTGCCCTCTTGTTACCTAATATTGTTGTCCTATTAAAGAAACC
GGAGAAGTTTCAAACGCCCATCTTGTTCAGTCATCTATGTGTCGTTCTTT
TATACGCCCTACTGGCAATTGTACCATTCATCATTTTCGGACAAACGGTT
GAAGCAAGCATAATAGATACTTTACAAGATGCTATCTTAGCTTTGAAAAT
GAGTCCGGTCTGGCTTTCTGTCATTACCCTTGCTTCGATTTCATTGGCTA
TCCATTTTACAATGGTGACAGTGCTTTGTGCCAATccaatttttcttaat
ttggAGAATAAATTCAACATACCGTCAGagTTTACATGGAAAAGGTTTGC
ACTTCGCTCATCAATCGCTTTAGCATTTGTATTGGTTGATATCATGATCC
CTTACTTCTCACCTGTCATCTCTATCGTCGGCGCACTACCGCTCGCTCTG
CTTTGTATTATCTATCCTATCATTGTTTACTTTCATACGTTCGAAAAGAA
ATCGAATTACATGAAACTTTTCCTTGGATTTGTTTTATGTTTAACTTTCG
CATTGATGATTGGGAACACGATATTCAGTATTTGGGatattgttgtttat
tttgaattgcCATCATTTAAAGCtgtcaaacattttggaaatcaaactGT
CAAAGACACGTGGCGAAAAGCTGCCCTGAGGAAAAACTTTACCTTCACTC
AGTCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072479-exon-scaffold_78-1491911889:70632..71907 | TCONS_00072479-exon-scaffold_78-1491911889:70632..71907 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1510915933:70632..71907 | TCONS_00072479-exon-scaffold_78-1510915933:70632..71907 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1575043694:70632..71907 | TCONS_00072479-exon-scaffold_78-1575043694:70632..71907 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1491911889:72647..73031 | TCONS_00072479-exon-scaffold_78-1491911889:72647..73031 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1510915933:72647..73031 | TCONS_00072479-exon-scaffold_78-1510915933:72647..73031 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1575043694:72647..73031 | TCONS_00072479-exon-scaffold_78-1575043694:72647..73031 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1491911889:73158..73928 | TCONS_00072479-exon-scaffold_78-1491911889:73158..73928 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1510915933:73158..73928 | TCONS_00072479-exon-scaffold_78-1510915933:73158..73928 | Clytia hemisphaerica | exon |
| TCONS_00072479-exon-scaffold_78-1575043694:73158..73928 | TCONS_00072479-exon-scaffold_78-1575043694:73158..73928 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:70632..73928 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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