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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072478 ID=TCONS_00072478|Name=TCONS_00072478|organism=Clytia hemisphaerica|type=transcript|length=1250bp
gctcaggacaataaaaaagaaaaaccatctgattatccattttaaaaatc
atttatcTTATTCGGCTATAAAAATTGCGGAAAACATCCAGGATTTTTCT
CTAAGTCCTACAGTGTTCATATAGCGAAAAGTATTTTTGAATCTCTGTTG
ATCCAGGtttaaaattaaaactgaaaaatcCAACACTAAAGAAACCAACT
AATAATTCTACCACGAAAAATTTTAATATGTTACAAGCGTTAGGTAAAAA
ACCAACGACTACCACAATATCTTCATTTCCGCTTTATAGGAGAAGCTTGG
AAGTCTAATTCAGAATTTAAACCCTGaacttttttgtcaattttcactTT
TGTTGACTTTATTACATACGTTTCGAACACACCCTGATTACGTCATTTTT
GAGTTCACGTGATCATCTTGACACTGGTTTTATCGGGAATCAATATTCAT
GTCGTAATATTTTGAGTCAAAAACAAGCGTAAACCCGAGGTCGTTTTGTT
TGTTGATTAGTCCTTGGGAAAAAGAGCTCCACTAAACATGATCCTGATTT
GAGTAATTGTCCATTCGCCGTTCATTTTAAGGTGGTGTTAACTCTTGACA
GACATCGACTGCTTGCTCAGCTCGAAGTTCGGACAAGGGATATAAAACTT
TACCTATCGGACGTTCCCCCAACAATGGATGTGTGTCCATGACAAATAAG
CACAATGTATATTCACGTAATTTATGATACAAAACATCTCTGATGCGAAA
AGTTTCGTTAAATTCTGGATCTGTATCATTCTCAACAACTCTGGTTCGCT
TCCAAAGGAAATCTTCTGGTACCAAACATAAATTGACATAGCTGTTCACA
TTATCTGACGTCACATCCACCTTGGGTTGCAGATCGAATGCATTCTTAAC
AGTAACCATTAACTCAGGAACCTTGGAATTGTATTGTAACTGAAAGCTTA
AAAAAGCAGGACCGTTGGTTGAAGGTTGTTTACTCAAGTTTTTATAATCC
GTTTCTTGGTCATAACTCACAACATTTTCGGTTTCCGGACAACTGGATGG
ATGTAATGATGAATTATCGTCGTCTGAGAAAAATTCCGAGTaaCTAGCGT
ACCCCGATACTTGATCGTACTTCCGTTGCTTGATTCGATATTTGATTAGG
ACTACCAGAAAGAAACAACCAATCACGATCAACAATGTGCTGAACACTGT
CAGAATGACCAAGATCCATGctgaaagcaaagaaaaaagaatgaataGGG Run BLAST on NCBI transcript from alignment at scaffold_78:43355..45081+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072478 ID=TCONS_00072478|Name=TCONS_00072478|organism=Clytia hemisphaerica|type=transcript|length=1727bp|location=Sequence derived from alignment at scaffold_78:43355..45081+ (Clytia hemisphaerica)
gctcaggacaataaaaaagaaaaaccatctgattatccattttaaaaatc
atttatcTTATTCGGCTATAAAAATTGCGGAAAACATCCAGGATTTTTCT
CTAAGTCCTACAGTGTTCATATAGCGAAAAGTATTTTTGAATCTCTGTTG
ATCCAGGtttaaaattaaaactgaaaaatcCAACACTAAAGAAACCAACT
AATAATTCTACCACGAAAAATTTTAATATGTTACAAGCGTTAGGTAAAAA
ACCAACGACTACCACAATATCTTCATTTCCGCTTTATAGGAGAAGCTTGG
AAGTCTAATTCAGAATTTAAACCCTGaacttttttgtcaattttcactTT
TGTTGACTTTATTACATACGTTTCGAACACACCCTGATTACGTCATTTTT
GAGTTCACGTGATCATCTTGACACTGGTTTTATCGGGAATCAATATTCAT
GTCGTAATATTTTGAGTCAAAAACAAGCGTAAACCCGAGGTCGTTTTGTT
TGTTGATTAGTCCTTGGGAAAAAGAGCTCCACTAAACATGATCCTGATTT
GAGTAATTGTCCATTCGCCGTTCATTTTAAGGTGGTGTTAACTCTTGACA
GACATCGACTGCTTGCTCAGCTCGAAGTTCGGACAAGGGATATAAAACTT
TACCTATCGGACGTTCCCCCAACAATGGATGTGTGTCCATGACAAATAAG
CACAATGTATATTCACGTAATTTATGATACAAAACATCTCTGATGCGAAA
AGTTTCGTTAAATTCTGGATCTGTATCATTCTCAACAACTCTGGTTCGCT
TCCAAAGGAAATCTTCTGGTACCAAACATAAATTGACATAGCTGTTCACA
TTATCTGACGTCACATCCACCTTGGGTTGCAGATCGAATGCATTCTTAAC
AGTAACCATTAACTCAGGAACCTTGGAATTGTATTGTAACTGAAAGCTTA
AAAAAGCAGGACCGTTGGTTGAAGGTTGTTTACTCAAGTTTTTATAATCC
GTTTCTTGGTCATAACTCACAACATTTTCGGTTTCCGGACAACTGGATGG
ATGTAATGATGAATTATCGTCGTCTGAGAAAAATTCCGAGTGTGAGTAAT
ACGTCTCGTTATTGATTGGGATGCGGACGGGATCAGGTGGGGAGCCATAG
CCATCCCTTGGGCTATCTATTGACGTGTAGCCTGCACGCAATGTTTCTGT
AAGCTCGCTGCCACCACCCATGCTGTTTCGGCTACTAACTCTACTATCAT
CGTCACGTGCTAACGGACTATCTTTCACTTTAAAATCGGACGATTTCAAC
GAAAAGGATTTTCGGAATAACTGATCATCAAAACTCGCGCATCGGTTTAA
GGTATGCGACGACGGCGTTCCCGGATATTTTACTGTCCGTGTTTTAGGTG
AGAAACTGTGATTGCCGACGGAGCTGTAACTGTGTTTCTTTTTGAAAGGT
GGGAAAAGAACGGGAGTTCCGGCTTGTAGTGTGGTCGGGTAAGTAAGCGG
AACTGTATCACTAAAACTACCGTTAAAATAAGCGGCTGTTTTACCGGGCA
cgtatttcttctttttagaaCTAGCGTACCCCGATACTTGATCGTACTTC
CGTTGCTTGATTCGATATTTGATTAGGACTACCAGAAAGAAACAACCAAT
CACGATCAACAATGTGCTGAACACTGTCAGAATGACCAAGATCCATGctg
aaagcaaagaaaaaagaatgaataGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072478-exon-scaffold_78-1491911889:43355..44445 | TCONS_00072478-exon-scaffold_78-1491911889:43355..44445 | Clytia hemisphaerica | exon |
| TCONS_00072478-exon-scaffold_78-1510915933:43355..44445 | TCONS_00072478-exon-scaffold_78-1510915933:43355..44445 | Clytia hemisphaerica | exon |
| TCONS_00072478-exon-scaffold_78-1575043694:43355..44445 | TCONS_00072478-exon-scaffold_78-1575043694:43355..44445 | Clytia hemisphaerica | exon |
| TCONS_00072478-exon-scaffold_78-1491911889:44923..45081 | TCONS_00072478-exon-scaffold_78-1491911889:44923..45081 | Clytia hemisphaerica | exon |
| TCONS_00072478-exon-scaffold_78-1510915933:44923..45081 | TCONS_00072478-exon-scaffold_78-1510915933:44923..45081 | Clytia hemisphaerica | exon |
| TCONS_00072478-exon-scaffold_78-1575043694:44923..45081 | TCONS_00072478-exon-scaffold_78-1575043694:44923..45081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:43355..45081 + |
Blast
The following BLAST results are available for this feature:
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