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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072477 ID=TCONS_00072477|Name=TCONS_00072477|organism=Clytia hemisphaerica|type=transcript|length=1401bp
ACCTTCTCCAACAGGAGATGtacggtttttttataagaaaacccCACTTC
CTTGATGAgacatttttaaaatctgattttgaactcaaaattatttttct
atattttttgttttctagaaagtagatacaaaagaaaaatgattgaaaat
gaaaaatgataatttGCATGGTGATATGCTTTATAACGAAAAAGAATGAT
CAGAAAGTTACTGAGACATGCGGTGTGAGTGATTCGTTAACCAATTATGA
AACAGGTGGTGTTAACTCTTGACAGACATCGACTGCTTGCTCAGCTCGAA
GTTCGGACAAGGGATATAAAACTTTACCTATCGGACGTTCCCCCAACAAT
GGATGTGTGTCCATGACAAATAAGCACAATGTATATTCACGTAATTTATG
ATACAAAACATCTCTGATGCGAAAAGTTTCGTTAAATTCTGGATCTGTAT
CATTCTCAACAACTCTGGTTCGCTTCCAAAGGAAATCTTCTGGTACCAAA
CATAAATTGACATAGCTGTTCACATTATCTGACGTCACATCCACCTTGGG
TTGCAGATCGAATGCATTCTTAACAGTAACCATTAACTCAGGAACCTTGG
AATTGTATTGTAACTGAAAGCTTAAAAAAGCAGGACCGTTGGTTGAAGGT
TGTTTACTCAAGTTTTTATAATCCGTTTCTTGGTCATAACTCACAACATT
TTCGGTTTCCGGACAACTGGATGGATGTAATGATGAATTATCGTCGTCTG
AGAAAAATTCCGAGTGTGAGTAATACGTCTCGTTATTGATTGGGATGCGG
ACGGGATCAGGTGGGGAGCCATAGCCATCCCTTGGGCTATCTATTGACGT
GTAGCCTGCACGCAATGTTTCTGTAAGCTCGCTGCCACCACCCATGCTGT
TTCGGCTACTAACTCTACTATCATCGTCACGTGCTAACGGACTATCTTTC
ACTTTAAAATCGGACGATTTCAACGAAAAGGATTTTCGGAATAACTGATC
ATCAAAACTCGCGCATCGGTTTAAGGTATGCGACGACGGCGTTCCCGGAT
ATTTTACTGTCCGTGTTTTAGGTGAGAAACTGTGATTGCCGACGGAGCTG
TAACTGTGTTTCTTTTTGAAAGGTGGGAAAAGAACGGGAGTTCCGGCTTG
TAGTGTGGTCGGGTAAGTAAGCGGAACTGTATCACTAAAACTACCGTTAA
AATAAGCGGCTGTTTTACCGGGCAcgtatttcttctttttagaaCTAGCG
TACCCCGATACTTGATCGTACTTCCGTTGCTTGATTCGATATTTGATTAG
GACTACCAGAAAGAAACAACCAATCACGATCAACAATGTGCTGAACACTG
TCAGAATGACCAAGATCCATGctgaaagcaaagaaaaaagaatgaataGG
G Run BLAST on NCBI transcript from alignment at scaffold_78:42472..45081+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072477 ID=TCONS_00072477|Name=TCONS_00072477|organism=Clytia hemisphaerica|type=transcript|length=2610bp|location=Sequence derived from alignment at scaffold_78:42472..45081+ (Clytia hemisphaerica)
ACCTTCTCCAACAGGAGATGtacggtttttttataagaaaacccCACTTC
CTTGATGAgacatttttaaaatctgattttgaactcaaaattatttttct
atattttttgttttctagaaagtagatacaaaagaaaaatgattgaaaat
gaaaaatgataatttGCATGGTGATATGCTTTATAACGAAAAAGAATGAT
CAGAAAGTTACTGAGACATGCGGTGTGAGTGATTCGTTAACCAATTATGA
AACAGGTATACTCATTTTCAatcgagtttcaagcccgaaggcaagagaaa
ttgaagctaNAACGAAAAAGAATGATCAGAAAGAGTTACTGAGACGTACG
GTGTGAGTGATTCGTTAACCAATTATGAAACAAGTATACTCATTTTCAat
cgagtttcaagcccgaaggcaagagaaattgaagctacttatttcccatc
caaaacgcgcatagaacgcgccgtaatcacgACAACGGATTATATCTAGC
GACTTCTTTGTTTTGAAGGACTACACTTTTTGAAATCACGAtacatttta
gtttcaatccggcgtttcaatccggcgtttgtgtaaaaattaCGCGTGGA
CGCTCTGAATGGGAAatcagtggtttcatttcccatccaggagtctcgcc
tttAGCCCTTTTggtttgaaactcaatgggtatACTTCCTATTAGAGTGA
AACCATTTTAAATGcattttaaagggataatcagatggtttgagatatac
AGAAACCAATTTGAGTGGGTTCTTAAACATTCCTTACCTTGAAATTCTAA
TGTTCTCttactaaaagtcaaaaacttgtaacttaaataCCTCGACTTTG
ATAAATAgttatacaaaaatattttcagcttttgctcaggacaataaaaa
agaaaaaccatctgattatccattttaaaaatcatttatcTTATTCGGCT
ATAAAAATTGCGGAAAACATCCAGGATTTTTCTCTAAGTCCTACAGTGTT
CATATAGCGAAAAGTATTTTTGAATCTCTGTTGATCCAGGtttaaaatta
aaactgaaaaatcCAACACTAAAGAAACCAACTAATAATTCTACCACGAA
AAATTTTAATATGTTACAAGCGTTAGGTAAAAAACCAACGACTACCACAA
TATCTTCATTTCCGCTTTATAGGAGAAGCTTGGAAGTCTAATTCAGAATT
TAAACCCTGaacttttttgtcaattttcactTTTGTTGACTTTATTACAT
ACGTTTCGAACACACCCTGATTACGTCATTTTTGAGTTCACGTGATCATC
TTGACACTGGTTTTATCGGGAATCAATATTCATGTCGTAATATTTTGAGT
CAAAAACAAGCGTAAACCCGAGGTCGTTTTGTTTGTTGATTAGTCCTTGG
GAAAAAGAGCTCCACTAAACATGATCCTGATTTGAGTAATTGTCCATTCG
CCGTTCATTTTAAGGTGGTGTTAACTCTTGACAGACATCGACTGCTTGCT
CAGCTCGAAGTTCGGACAAGGGATATAAAACTTTACCTATCGGACGTTCC
CCCAACAATGGATGTGTGTCCATGACAAATAAGCACAATGTATATTCACG
TAATTTATGATACAAAACATCTCTGATGCGAAAAGTTTCGTTAAATTCTG
GATCTGTATCATTCTCAACAACTCTGGTTCGCTTCCAAAGGAAATCTTCT
GGTACCAAACATAAATTGACATAGCTGTTCACATTATCTGACGTCACATC
CACCTTGGGTTGCAGATCGAATGCATTCTTAACAGTAACCATTAACTCAG
GAACCTTGGAATTGTATTGTAACTGAAAGCTTAAAAAAGCAGGACCGTTG
GTTGAAGGTTGTTTACTCAAGTTTTTATAATCCGTTTCTTGGTCATAACT
CACAACATTTTCGGTTTCCGGACAACTGGATGGATGTAATGATGAATTAT
CGTCGTCTGAGAAAAATTCCGAGTGTGAGTAATACGTCTCGTTATTGATT
GGGATGCGGACGGGATCAGGTGGGGAGCCATAGCCATCCCTTGGGCTATC
TATTGACGTGTAGCCTGCACGCAATGTTTCTGTAAGCTCGCTGCCACCAC
CCATGCTGTTTCGGCTACTAACTCTACTATCATCGTCACGTGCTAACGGA
CTATCTTTCACTTTAAAATCGGACGATTTCAACGAAAAGGATTTTCGGAA
TAACTGATCATCAAAACTCGCGCATCGGTTTAAGGTATGCGACGACGGCG
TTCCCGGATATTTTACTGTCCGTGTTTTAGGTGAGAAACTGTGATTGCCG
ACGGAGCTGTAACTGTGTTTCTTTTTGAAAGGTGGGAAAAGAACGGGAGT
TCCGGCTTGTAGTGTGGTCGGGTAAGTAAGCGGAACTGTATCACTAAAAC
TACCGTTAAAATAAGCGGCTGTTTTACCGGGCAcgtatttcttcttttta
gaaCTAGCGTACCCCGATACTTGATCGTACTTCCGTTGCTTGATTCGATA
TTTGATTAGGACTACCAGAAAGAAACAACCAATCACGATCAACAATGTGC
TGAACACTGTCAGAATGACCAAGATCCATGctgaaagcaaagaaaaaaga
atgaataGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072477-exon-scaffold_78-1491911889:42472..42726 | TCONS_00072477-exon-scaffold_78-1491911889:42472..42726 | Clytia hemisphaerica | exon |
| TCONS_00072477-exon-scaffold_78-1510915933:42472..42726 | TCONS_00072477-exon-scaffold_78-1510915933:42472..42726 | Clytia hemisphaerica | exon |
| TCONS_00072477-exon-scaffold_78-1575043694:42472..42726 | TCONS_00072477-exon-scaffold_78-1575043694:42472..42726 | Clytia hemisphaerica | exon |
| TCONS_00072477-exon-scaffold_78-1491911889:43936..45081 | TCONS_00072477-exon-scaffold_78-1491911889:43936..45081 | Clytia hemisphaerica | exon |
| TCONS_00072477-exon-scaffold_78-1510915933:43936..45081 | TCONS_00072477-exon-scaffold_78-1510915933:43936..45081 | Clytia hemisphaerica | exon |
| TCONS_00072477-exon-scaffold_78-1575043694:43936..45081 | TCONS_00072477-exon-scaffold_78-1575043694:43936..45081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:42472..45081 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000008 | C2_dom |
Blast
The following BLAST results are available for this feature:
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