TCONS_00072468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072468
Unique NameTCONS_00072468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072468 ID=TCONS_00072468|Name=TCONS_00072468|organism=Clytia hemisphaerica|type=transcript|length=1825bp
aacaaaaaaacaaaaacacaggAAAATCAGATCAAGTAATGATTGAATTG
AAATTCgaaagaataaataaatgaCATACTTAACCATTTCTTCTCCTACT
GGAAATCCCATCAATTCAGAGAGTTGATTTTGACACCAGTCAGCAAACGT
GGAAGCAGacgccgccattttgttttggaatgttttgatttttttgcagc
TTCTGCATTTTTGCTTCATAACATTACGTAATTGAATATCTTCCGTATAT
AAAACTTAGGATTTTACGGAACGCCCGGGTAGctttttgtaaacaaacat
gGCAGAATCTCAGCAGAAAAAAAGTGTGGTGTTCATAAAATATCTCAACT
ATGAAAATCTTGAAGAAATACCAGAGGAAATTCTTAGAGATTTATCCATT
GGAAAGttatatttaaaaagaaatcttctCAGAACATTGACTCCTGATAT
TCAATGGATGACCAACCTGATTGAAATTAATTTAGATTCAAACAGGATTA
CAGATTTACCGAAAGaattgaagtatttgaaaaatttggaaactcTGGAC
GTTAAGCAGAATAATTTAAAATCCATACCAGAATGCATTTATGAGTTACC
AAAGTTAAGGATGTTGAATTTATATTTAAacgaaatcagttttattggga
aaggtaTTGGCAAATTAAAACAACTCCAAAGTTTGAATTTGAGCAGCAAC
AAAGTCAACTATCTACCAATAGAGCTGTTTGGGTGTGAAAGTCTCATTAA
CTTGCACTTGGACAGTAACAAACTCAATTATATACCACAGCAAATAACCA
AACTTAAAGAACTGAAGGAATTATCAATATGCTGTAACAATCTCCCCTTT
CTTAATCTCAACATTGgttcaatgaaaaatttgaaaagtgtaGCATTTTT
tcagaataaaaaattatggtatATTGATTTAAACTCTATTCTCCCAAAAT
GTGGGCATTACACTACACGTCTTCAAAAGACACTAACCTTTGAAGAACAA
TCAGAAGCTCTTGGGAAGATCCGACGCTATTATAATTTACATTTAACTGC
GAACAACAATATTAAAGTTCCTGTTCCTCCTTTATTGGAAATCGTTTTAA
GACAAATGagaaaagactttttgtatTCGAAAGATatggagaaaaaaata
ccaaaagatATATTTACCAATTTGGATTGTCCTCCAGGTTTTTGTTGTTA
TTGTGAACAACCTGTCTTCACTTGGGCTATCTTCAGCACAAGAGGTGGCT
ATTTAAATATATTCTGCTCTGTTATGTGTTTGGAAACTTTTTATAATCGA
TGGTAATTAACCTTGATAGTGCTGACTTACttttaaggaaagaaatttct
ttcggccaaatttaaatttaaagatcattcgccaaaataaattctcgcca
aatttaattttccttCGATTTAGTTTCTATTTTTCCTAAAAACTCTTTTC
CCCctcttttttcagctaaaatattaaacaaaaatgggtcgttcgcctaa
ataaattccgccaaattgcatcaaaattggcgaatgggctcatttgccaa
aatttcttcaccTTAAGGTAGTTgggcttttttaaattttaaagtcTCTA
CTCTTTTTAAGTGTGTATCATTTCTCATTTTACATTGTCTCAATTTTAGA
GCCTGTTCACATGGATTTTCGGTACGGTTAAGATTCAGACCGATCTGAGA
TACTCTCTTGTTTACATGAGGTGTTTCGGTACGGGCTGAATTTTCGATTT
CGGTTTGGGGTGGTCGTCGTACTTTAGCGGGCCGAATATTTTCCAcagac
ttcaaaaataaaaatctcagCCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_78:3784..22603+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072468 ID=TCONS_00072468|Name=TCONS_00072468|organism=Clytia hemisphaerica|type=transcript|length=18820bp|location=Sequence derived from alignment at scaffold_78:3784..22603+ (Clytia hemisphaerica)
aacaaaaaaacaaaaacacaggAAAATCAGATCAAGTAATGATTGAATTG
AAATTCgaaagaataaataaatgaCATACTTAACCATTTCTTCTCCTACT
GGAAATCCCATCAATTCAGAGAGTTGATTTTGACACCAGTCAGCAAACGT
GGAAGCAGacgccgccattttgttttggaatgttttgatttttttgcagc
TTCTGCATTTTTGCTTCATAACATTACGTAATTGAATATCTTCCGTATAT
AAAACTTAGGATTTTACGGAACGCCCGGGTAGctttttgtaaacaaacat
gGCAGAATCTCAGCAGAAAAAAAGTGTGGTGTTCATAAAATATCTCAACT
ATGAAAATCTTGAAGAAATACCAGAGGAAATTCTTAGAGATTTATCCATT
GGAAAGttatatttaaaaagaaatcttctCAGAACATTGGTGAGCATTTT
taagaattattttaaaatctCAGAATGCTCAAGtcaactcttttttttca
atcaaaactgTAGCTAGATTTGACCCCGCCCAGCTGCTGGAACcatcaaa
ataatttgtcaATGATTTGTCAGTTTGTGGAAATATGTTGCAACCATAAG
AACAGAGAAGTAGCATTTAAAAAAAGAGGAATCGTATAGGGAGATCTAAA
ATTTCTAGAtgtataaaatgataaaaacagcCAGgccgtttattatattt
tgttttcaatcaaGATAGTGATATCTGCAGAGTTAAAAGTTGTTTTGGGG
AACGCGACAGACCATTAAATAACTAATTAAcagttaccgtcaactgctct
aacttggctGGCTTGCTTgggggacgattggtcgaaacatgggactatGA
TATtgtggcctgtattttcacttacaaTTGAATCTCTTTGACaccaaatt
tgttttgataactccaccaagtttgtcataacatgtcacgaaaACTTTCA
CTGATTGATAGtgtgcgccctttttaacttttttttgttttcattcaata
tGACTGGACGTCGATTGGAGAATTATTGGACGTCCTCCGCCTTAACCGTC
TATTTCTCGATGGGATAAACAAATAgcaagtgtgtaacttgccgcgtgag
tgacgtcaaatgctccatcgttttgccactaatatgGTCTCCTTCGTTCC
TGACATTGGCTTGTGTTCCACTagggatttttttatatatcaatttaaaa
gcctactcagtgcgaaagaaaaatcatgtattttttgATACGCTGTtaat
taactcaaatcaaatgactttgggggttcggtgaaatggtggccaaattg
ccctCCCATGTTTTGTctgatagtcccaagttagagcagttgatggtacc
TACCTAAAGACAAGATAAAATTTAtcacgtttttattggctgaggcgTGA
GGGAAAGTCagaaagtaatgtatgtggagtaatttgttattcaataggtc
ATCACATTCTCCTAAACAACTATTTGGTTCTTGTAGTataaactaggtca
cagtgtggatgcaaaccacactgaaacgaccgcctacCATCACGTATCAC
GCTCGCGAAATAGCGAAAcgcctactctcgggtacctaatagccgggggg
tttggaataagcaggggggttggaaaaaatctcaaaacttaataagctNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTTCCGAACTaagtttcaaa
aaacattttcccaaaaattaataagcgggggggggacggctattaggtac
ccaagagtacatgtcatctccagtacattttagattattcattgaaaaca
gattacaatatagtcatttttcatgtctcgattattcagttccgaataaa
agacatttagtaaaataaaaaaagaaacaactgggtaatctagttaaaaa
aaccgaaagtaaatggtagaaaaagtaatgagccaaggcaaaatgAGATT
AGCGTatcactatgaaagaaaccgcctccggcggtcgataaacATTTTGA
TTTCATGCTAATGTTAGCAAAAGagtgaaaattgataaaaagttttttca
aagttaGTTAGACAGCTAGAAAAATTGTGTCTTAAAAAgtcgattttttg
cacaatctGTGAAGTTGCCTGGGCTGATTGCTAAAACATTTATTTTAGCC
TGATTGAGATTGTGtggacatttttttaaattttggtaaTATTGATTTGA
ATTATTTGACTTAAGATATACTATTAATACCTAAAATTACACCTTTTatg
taaaaaattaaatatcaaTGTTACCATCTTTGGAATAGACTTTTGTAGGA
TGCAATGCTCTATGGACCAATAATCAGCCTTTAGCTTAAAAATTATGTTG
GCAAGTGTCAATACAAGTCTAATTTCTAGAGTCTGGAAATcaggaatttg
attttttttatcagaaaaaagTTCTATTTTCAATCTACGTTAAAGTTTTT
TATATTATAGTGTAATTCTGTGTATATAATTTAATTTTATCTTCATTTCT
GATTGTTAATATTTAGACTCCTGATATTCAATGGATGACCAACCTGATTG
AAATGTAAGTTTCTAATTTAAAAATCAGAATTATGATTTGCTtacctacc
ttaagggaagaaattttggcggaaagaaatttcagtgaaattgGTGAATT
GCCTAAAaatttcgccaaattcgccaaaatttctttctgccaaatttaaa
tttatactagttcattcgccaaaataaattctggccaagtttaattttca
atcaatttagtcTCTATTCCTCCTAAAAACCctcttttgtctcttttttc
agctaaaatattagAAACTAAtattcgccaaatttagaaacTTTAGTAGa
tcaccaaaaaaaattccgccaaattgcaacaaaattttttttcgccaaaa
tttcttctcttaatgtaatttaattttaccagagagaaaaaaaattgggc
tCAAAAgttgagagaaattttagttttaaagagacTTTTCTTTTTGATAG
TGTTCTAATGTGAGGTTCTTTATACCTTCTAACTGATATCAGAAAACATA
TGAAGAATTATATGATATGTTTCCACTGGTTTCCATCATTTTCTGCCTCA
AATTATACTATATTAAGAGGCTTTTATTATGCGAAATTGTCAGTTGAAAA
TATGTGGTACATTATTTATTTTGTATTATTTCAATTTCCAGTAATTTAGA
TTCAAACAGGATTACAGATTTACCGAAAGGTAAGATTTATTAAAATAAGT
TCTTTGGGAATCAGCTTTAATTGGATatattttcgcggggattaaatttc
gcggtttcgatcaactgcaaaatattaagaatttcgCGGATGATAATATC
AATAGACaacattttcatgattttgtgtctttttactACCAGATTTTACA
TACTGGatgttgaaatacgcattattagcacttctttgatgccagttaac
aatttaaaaaatgattgcctgacattttttgagttttgttcaaTTTTGTG
GATAAGACCTTTCcaaattttcattgttattttgaCTGCacaaatttcaa
agcaaaaaatatttacaaattattaTTGATCATATTACAGTGAAATATAA
AAGTAATGAAAcctcaaaattgaaaataattgtaTGAGCGAttataaaat
aatcaatttgaTCAAATAAGGAACGAGTAAAGTCCANATCAGAATTATGA
TTTGCTtacctaccttaagggaagaaattttggcggaaagaaatttcagt
gaaattgGTGAATTGCCTAAAaatttcgccaaattcgccaaaatttcttt
ctgccaaatttaaatttatactagttcattcgccaaaataaattctggcc
aagtttaattttcaatcaatttagtcTCTATTCCTCCTAAAAACCctctt
ttgtctcttttttcagctaaaatattagAAACTAAtattcgccaaattta
gaaacTTTAGTAGATCACCCAAAAAAATTCCGCCAAATtgcaacaaaata
atttttcgccaaaatttcttctcttaatgtaatttaattttaaCAGAGAG
AACTGGAGAGAAACAAAATTGGGCTCAAAAgttgagagaaattttagttt
taaagagacTTTTCTTTTTGATAGTGTTCTAATGTGAGGTTCTTTATACC
TTCTAACTGATATCAGAAAACATATGAAGAATTATATGATATGTTTCCAC
TGGTTTCCATCATTTTCTGCCTCAAATTATACTATTTTAAGAGGCTTTTA
TTATGCGAAATTGTCAGTTGAAAATATGTGGTACATTATTTATTTTGTAT
TATTTCAATTTCCAGTAATTTAGATTCAAACAGGATTACAGATTTACCGA
AAGGTAAGATTTATTAAAATAAGTTCTTTGGGAATCAGCTTTAATTGGAT
atattttcgcggggattaaatttcgcggtttcgatcaactgcaaaatatt
aagaatttcgCGGATGATAATATCAATAGACaacattttcatgattttgt
gtctttttactACCAGATTTTACATACTGGatgttgaaatacgcattatt
agcacttctttgatgccagttaacaatttaaaaaatgattgcctgacatt
ttttgagttttgttcaaTTTTGTGGATAAGACCTTTCcaaattttcattg
ttattttgaCTGCacaaatttcaaagcaaaaaatatttacaaattattaT
TGATCATATTACAGTGAAATATAAAAGTAATGAAAcctcaaaattgaaaa
taattgtaTGAGCGAttataaaataatcaatttgaTCAAATAAGGAACGA
GTAAAGTCCAATTTAAAGTGAACAAGAAGCCGAAGCGGCATGAAGGCcaa
gctgacgtggcaataaccaaatGTCTTTTGTATTGGGTATATACCTTAAG
AGAACCAATGTTTGCGGAAtcgtatttttgcaattttagggtttgaaaGA
AAACATCGAATCTTAGAATCAGCTAATGCACACATTTTCGGCAGAGATTG
AAAAACAGAAcattgaaaaagttaaaaaagttcgaaaattggctggatga
aaaaaaaaaaaacagctgcCCTGGAAGGTCAGTAATGATAAATGATACGc
aatatatgtatataatagatttactttatgtttttgttactagtatgaaa
gaaaaaatCGGTTTAAATAAATTCACAAActtcaaatgtcaaatgttgac
cgccaaagttcagaaatatcaatttaacgcgtagcatcatgaaaaacatt
ccaaacttattcaaatttaaactcacatgagctgcattttagtatacttt
aatgagttacagcataagtttacttgggaaaatcctctgtcaggtttgaa
aaatccagccatcGTCCGTTTAGAgcggtcgtggcttcttcgtaaatatg
aaagacagatctggacttatttcgtactttccagtctcttgttcgtagtt
tttctgactttctggttctgtgtaagttatttactatgttttctaactta
ctgaatgacataccgacagatcgccaccggtgggattcgaacccactaaa
tgcaaagttccgatgatttgaaacccaatgccttatccactgcgccacgg
attcatgccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGCGCTGCGCGGCTGGGCCAATTATATTTTATTGGCTACTATT
AATTCAATCCATCCAACATTGCTTGATTTTTTACAGTTGGGgttcaaatt
tttgtttacagtaAGAGAAAACTTATTTTAGTGAGAactaaaaattttgg
aaaatttgggaaaaattcgtcaaaattagttctcgtgaaaatttaaaaag
tttactGACTAAAGTAAGTTCtcattaaccctttaagtgccgatgtcgta
tatatacgacatgggctatataggagggcgaagccctcctgtaatgccca
gtttgagttagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCTTTCCAC
TCGAGTTTCCCCCAACTTTGTGTGGAAATTACACCCTTGTCTATTTCATC
AATCTCACCCCTGCCCAATCAAATTTAAGCAATCAGCCATTTCCCCCGGT
CCTCTTTCTACTTGAGTTTTCATATTTCCATCGGGACTTCGAGACCTTGG
GATTTTTGATTGGGGTAACTTTTTTTCAGACTATACTTTGGTAAATTTCC
ATTCGGGACTTCGAGGCTTTAGGttggtgtaaatttttttttNATACTTT
GGTAAATTTCCATTCGGGACTTCGAGGCTTTAGGttggtgtaaatttttt
tttttggtagatTTTGATATATTATAATTCGGGActttcgggacctcggg
acttttggttggtgtattttttttctcagaaatttgatatatttcaattc
gggacttcaggacctcgggacttttggttggtgtaattttttttcataag
tttgatatttcgggacttcgggacctcgggactttaggttggtgtatttt
ttttcttcgaaatttgATATAGTTCAATTCGGGActttcgggacctcggg
acttttgtttggtgtaattttttttctcataagTTTGAcatttcgggact
tcgggacctcgggactttaggagggtgtaaatttttttttctgatagaAT
ATATCTCAACTTATTCTGTTTTTGCGTTCTGTGAAATACACATCAAAAAT
CATGACCGacgttgtaaaaactccagctcatccggGTTTGTTGGCTGCTA
AATAATATGCATGcatcaaaaaaatcatgaagCTACACTCAAGTAACTTA
ACTTTGGCTCAGTTAATAGCTTAGTTAATAAATGACTAGAGGCTGAATCG
TGTAGTGATATCTTTTTTGTAAAGGAGGGTACtacaagataaataaaaaa
ggtAACGATTTTATAGTGTTGAtaaagaaattaaatattttgagataCTA
AAGTTCGATGCATACCGAGAAAACATCCTCGACTCCAGGACACTGTTTTT
CTTCACACAAGGAGCCGCTATGTAGGGCTTCACGAGAATCTAGAGTCAGA
ATAACGACGTTAAAAGAGACGTGACCCAAAATTGTAGGGAGAGAAAATTT
TGAGCGCGACTgtcatattttcaaaagagcgagaaaaaaattagaTCCTG
GGGCCGAGGGTGCCGAgacaaaagagataatattacagttaaaaaaagtt
aaaaattaaattgagTAAATTGTGAACGTTTAATaacaaatatttaaatt
ttgatttaaaaaaaaaagttcacacATCCTGCTTTAGTTTGATCCTTTGA
TTTTTGTGAGAGATTGTTCTTTTAATGTCTTTTTTGGAATATGTGAGGTT
TGTGTTTcggtttttttgttgttgttgtcgtaaGAGGGGTACCTGATATG
ATATGTAaaaaaagaagccaatcaaatttgTTCAAGTAAATTTATTTAAA
TTCTCGATAATCTTAACAACGCCACATGACATGATGTTTAAAAGCACATT
TCCTTTCATCGAAGagttttcaagatattttttgTGCAGAGAGATTTAAA
AGTCAAAGGCTATTTTTAACCAACCGACCGAGTACCGTACAGCTGACTGA
ATTAAACTAGTATACTTACATGGGCCATcgtgttttttcttcaaattcaa
atgtTCACATTGAGCAACTCGAATGTATTGTATACTACTGTACGTTTCGT
TGTCTGTTCCACAAACAAATTTTGCTTCGGGTGCACCAACAACAAGCGCC
AGAGAAGCTTTaattataagaaatttaatataTGGAGATTTGTAGGACAT
AAAAATCGCAAACCTTTCTATTATGCAGATGATGATCACTAATCATAAtc
agagccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTT
GTAATTTGCAACTACTTCCCTTAATTAAACATTGTTGGCACATTTGTTAA
CTATATCCGTtattgaaagaagaaaaaaagaattacaaacGTTTTTGTAT
CATAAATTCTCATCGTGCTATCCAACAATCttgctctttttctttttttc
aactaGCCATAAAGAAGAAAAGCGGAGAATAGTATGCTAGTCTAAAATAG
CACTTACATTTGTCAGCTTTGACAGGTTGAATGTATGTTTTTGTTAAACA
AGATTCCAAATTCAAATAAGCAATGTGAGAGTATTCTTTTCCATCAGATC
CAAGGACAGGATTTCTTTGTAAACCACGTATTCCTCTGAAAGCATCTATA
TTcggaagaaaataaataaaaaagttaattaagGCTGATTCAGGTGACAT
CTTCAACAGGAGTTTTAAGACAGACATGAAGTGGTCAGACACCATAAGGG
GGAGAATATTCCCAAACATTCTACAAATGCAAAATCCACTTTTGTGAAAA
TATATAGTAAAGTAACAGATATCTATTGCGGATAGTCCGCTAACCTTGGT
GTGGGTACCGACTGTAGGGGTACCGACTAAGTAGAAAaatcacgcgcgaa
aaaaaattaataaaagtctATCCCGTGCGAGGGTAGTCTGATATACAGGC
TTAGACTTAGTTTGCGTTGTCTATATATTCTCGGAACATAAAAAAAAAGG
AGACAGCACGCTAAGAATTTAATGTAAGAATGTTAGACGACTTACTATCA
CATGGCCCATTGTTTGCTttctttagtttcttgtttttacatttctcatT
ATCCAAACGGCATTCATTCCAATAAGTTCGACCATCATTACCGCATACAA
TCAATACATCATctgtacattttttttctttgcactGATACTCTAAAATA
AAGATGAGAGATCTTCATAAATTTTACTAAGGACGTAGTATTATCTTATT
CGCTTAAAAATATATAGTCGTATAAGGatatttttaagcgtttaaaaaaA
CTGCGTGGTGTAAAACCCTTCATcttctgatttttcttttttttttatat
agtgATAGCGACCTCGTACCCAGGGCCtgaaggccggtctccacttttcg
cgcgaaatgggcgacttaaccttttttgcatgaggaaaagattacgtaat
aaaaaagtttcgcgcgaacaaaaaaaagttgaaggaagttctactttttt
catctgttgcgtcaatttcgaccaatggaattgcttcatttttcaaccga
ccaatgaccttacaaaaacgtcaaaaagttttcgctcgtttcgcgtgaaa
gtggagaccagccttgattctcactttttttataattttttgatggTCGT
TTCGAATCGCCCTGGCAAAAAAGGATTGAGATTCGCTGACGTcagtgaaa
aaaaagttgaatttcaactattttttcgCAAGCTTTCATTTTCTGGAAGA
TAATTTTCTACTGATGTTACCGTGGTTGCATTGACGTCACAGCTACTAAG
AACCAATCACATACCTTAATCGATCAAAACATTAGCTCATCGACGGGAAA
TGTGTATAAGATTCTGTTCATGTATTTTTGACCCtcctttaaaaatttga
aaaagtggcTCTTGATGCCAATGGTAATGAAAAGATTGATAAGCCAGGCA
CCAGACTGATAGAAATGGGAAGAAGGAAGCATACAGATGATAGATGGTTT
ATATAAGAAGTCATATAGTCACATAGTCACATAGAAGTTATATACTTGAA
GTTCTTGAAgtcaaaacttttcattttccatgTAGGATATCGAAGGTGGT
GAAACCAGatattttgtacaaaaaaaagaacaagagTTGGAGACTGTTAA
TTTGTTCCTCTAAAAACTTGGAGATTTCGTGTGAAAGCCCAAAAACTTGC
AGAAAATGGTCTGTTTGATACCCCCCCCCATAAAATTCTCAACTACAAAA
ATTTTCACATTACAATTGTCGTGATTTTAAGGTAGGTGGCAGAAAAACTC
CCAGATCTGGAGATTTCGTTCAAAACTGTGAGCCTCACAACaagtttaag
atttaatcagataagaaaaatgaacaagAGATTACTCATAAAGATTTTGT
GAGCTGATTCGTGATTTTGTACGTTTCACTTTAATCTcaattcaaattgt
tttgacTTGGGAATATGGAAGATTTTTATTGCCAAAAACTGATAGTTTGA
TATCTGATAAAACAGTAATCCATTATTGACTTTTTTCTTGCAACTATGTT
GCTTGACCAAATCTACGTGTACTTAAGAAAAAGTATCAGAGTTTGTTTGC
CAATTGTTTGTTTCAATTTATCTGAAAATTATTGAGACAAGGCccggggg
ggcagtgggtttaccaactgacggtatgtatggcgaaaaaattggctttt
agaatcgcactcTTACAGtgtagaaaaaaatcggtgaaattcataccctt
acagtgcattttttcaaattttaaactcttttggagcaaaatcaaatcaa
gatttTGGAGCAAAAAtgtgcaatttttcccagatttgctgaaatttcca
cccttacagtgcatttatcaaaagcccacccttacagtgcatttatcaaa
agcccacccttacagtgcatttcatattttgaaaaacatacccttaaccg
ccgcacatacccgtcggtcaatttgcctgactgcccccccccaaGCGTGA
TGCTACAGATCGCCTCcctgttttgactggactcacccaCCTTTATGATA
GACGTTCGGTGATCAGGATGGTCCATcgaataactaattactacgGCATA
GATTACAGCTGTTGCCTtatgatgaaatattttatcatgtttttccTGAG
GACAACTCATGTATGCTGAAGTAATTTCCCTATTCAATAGACCATAGCGT
TAGCCTAAAGGTctgtttattgaaaatctattttagtTCAAAAGATGCAT
GAACGTGTAGTGTATTTTTTTACAAAGAGGCTTACTAATTTTGTGTCTTG
ACACTTACTAATTGTTTTGTTACAATTCTAGTAACAGAaagaaacaattt
tcaaaatattcttaatacgaggtttaatcttttttcacttttcatcctGT
ATTATATTATAAAAAGATGTGATGTTGGATTACCCAATTACCAACATCTT
TCTGGTGCAAAAAGgccttttggaaaaaaaatcaggCATGTTAgttattt
tggaatatttttgagtCGAATTATTCTACAGGAGGAGAGAACTTTGCAGA
TCTgtcataatttcccgtgtcggTGAATAACAACAGATCAAAGAGAATAC
TAATCTTGTTTGTTTGCCAGGGCNttgtgaggtgaggtattttttgtttt
ttctaaaattatgagcttggattcccaggctaccttttttcttgatgaaa
tatatataatgagaaaatacaACAAATAATAACTTACTCTTGTAATAATA
CTGTTTGTATTTAGAGAAGATATGATGCGGTGACGCTTCTGTTAGTGCCA
ACACAACGAGAACAGTTGCAAGGATTAAAATTGTCTTCATCTTGATTCAA
TTGTTGTATTATGAATAACAACATACCCTTTTCGAATTTCATCAGATTAT
TTATAGTAAGTTCAGAACAATAACTTTATGATATTATATAATCGCATGAC
TAGGAACCAGTCAGATTCGTGTAATTTTCTTTACCTGATGATTAGTATTA
CAATATAATATGTCTTCATTTACGGCTTTAGATAATTACTCCAATTTCCA
CCCGCTTTACATTTACATTTTCATTACATATTTATTGCttgcatttttgg
aaaaacatcCGTAATTTGTCAAATTATATAACAGTAACGGAAGCTTGTTA
TTGCCATTTGCTATCCCAGCATAATCTTTACCGTCCTTATAAAGTCCGAA
TAAAGTAATAAGAGTAACACGTGTAGAAGGTTTGTTTTCTACTAAGGAAG
GAAATCAGAGTGggtgaacattttaaaaatggaAAACTGGACACCATCGA
TTCATTCCAGGATTgttctgataatttttgaatAGAACTGGTTTTCGAAC
ATCAACTCTTTCCAAGACTGCAGTAATGCAGCACTTAATTTCGTGAATGG
CACCCGAATCTCCGCGAAACTAATCCtccgcaaaaaaaattatcccatTA
AAGCAATAGCTGGTTGAAATGTTTGATTCCTGATAGGAAGCGTGACAATT
TCTGTTACTCTAGTATGAAATTTACATTCCCACCtcaaaaaataactaaa
acattttctgtCTACAAAAACAATGAATTATATATCAAAGACTAAAGACA
AACATATTTTTTCTCTAATCTTGTGATTTTTCACTTCTTTagttaccgta
ttacttcgaataaacgccccttattagattttttgtattttaggaggggc
gtttaatTGAGGGGCACATTTAAAAGAAGGGGCGTTTAAGAAATAATTTA
AAAACGAGTTTACTTTGGTAACGTGATTTGGAACCttatttttcattatt
atttAAGTACAGATATGACAATTTAGGGATGTAGAAATGGCTGAAAACCA
CTTCGAATACAAAAAGAATACAATTATTGTAGTATatctaagtttttttt
catattataCTTCTTTATTGCTGcctgtttcaaataaacgccccccccta
TGGGGAGGCGCTTATTCGAAGGGGGCATTTATTCgaaggggcgtttaaaa
gaaagagggcgtttattcgaagtaatacgataATTCaatttattggacct
acctccgggtgccccggtgtaACCGTTGtctgtctgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgtctgttaccagcttttctcgagat
tggctcattagttttttctgatatttggcacaatgatgcaaaatggtaat
gcccgaaatgtgatggagcccaattttcgaaaaaaaatcatttccggccg
gaaatgccggaaatgtgccggaaaaaccggcttttttggcattttctcaa
gatttcaccattagttttttctgattttttgcacaaagatgcgaaTTAGT
AATGCTCAAAACttggctgagtccgatttttgagaaaaaatcttttccgg
tcgaaaatgccggaaatatgccggaaatcgccgtttttgcagattttcat
cggactttttccttttatttcgtagttttttcacacaaaaacaatcttaa
tagcaatgcccaccatgaagcatggttcaattgtcaataaaactgatttt
tgatgccgggactttctaaaaatcgccggaacagccgaatatcgctggaa
aaacgatttttctttaatttctcgagctgtactttatatttttttatgaa
attttgcgtactgatgcaaaatgacaatacctaaaatgtgacaaagcccg
attttcgaaaaacatttttNttatgaaattttgcacactgatgcaaaatg
acaatagcTAAAATGTGacaaagcccgattttcgaaaaacattttttccg
gccgaaaatgccggaaatatgccggaaaaaccgttttttggcattttctc
gagatttcgtcattagttttttctgattttttgcacaaagatgcgtaata
gcaatgcccaaaacatggccgagttcgatctttgagaaaaattcttttct
ggccgaaaatgccagaaatatactggaaatcgccgttttagctgattttc
attggactttttcctattatttctttgttttttcacgaaaaatcataatt
gataacaatgccaaccatcaagtatggttcaattgtcaataaaactgatt
tttgatgccgggactttctaaaaatcgtcggaacagccgaatatcgctgg
aaaaacgatttttcttgaatttctcgagctgtacactgatgaaaatggca
atacctaaaatgtgacggagcctgatttttgaagaaaaaaatttcggcca
aaaatgccgataatatgccgtcaaatccggtttgttgccattttctcgag
atttcattaatcgtttttcccgatttttgcacCAAGATGTCTATCAGCAA
TCCCTAAGTGTGGCCGattcggatttttgagaatcatgtttttccggccg
aaaatgtcggAAGTATGCTGGAAATCGcagtttttgcagatttgaattgg
gctttttccatatatttctttgttttttcacttaaaaaaattattgataa
caatgccaccatcaagcatgattcaattgtcaataaaacttttgcagttt
tccaaccggaactttctatttcttttttccctaaacccctccccccccat
caaaaatcaatgatgaaatttaatgcatttttgctaaccgctatattttc
ttaatgattgtttttctccttattgctatctaagtttcatcatcaggtag
gtccattcagcatattgcttgtttattttttttttagaattgaagtattt
gaaaaatttggaaactcTGGACGTTAAGCAGAATAATTTAAAATCCATAC
CAGAATGCATTTATGAGTTACCAAAGTTAAGGATGTTGAATTTATATTTA
Aacgaaatcagttttattgggaaaggtaagaattttttttctgttgaaaa
caaacttttttaaacgATACTCTATTCTAAAACCATCTTGAGATTTTTAG
AAAtataatgtttaaatttttttatattaattttttcaaattttcaaggt
aTTGGCAAATTAAAACAACTCCAAAGTTTGAATTTGAGCAGCAACAAAGT
CAACTATCTACCAATAGAGCTGTTTGGGTGTGAAAGTCTCATTAACTTGC
ACTTGGACAGTAACAAACTCAATTATATACCACAGCAAATAACCAAACTT
AAAGAACTGAAGGAATTATCAATATGCTGTAACAATCTCCCCTTTCTTAA
TCTCAACATTGgttcaatgaaaaatttgaaaagtgtaGCATTTTTtcaga
ataaaaaattatggtatATTGATTTAAACTCTATTCTCCCAAAATGTGGG
CATTACACTACACGTCTTCAAAAGACACTAACCTTTGAAGAACAATCAGA
AGCTCTTGGGAAGATCCGACGCTATTATAATTTACATTTAACTGCGAACA
ACAATATTAAAGTTCCTGTTCCTCCTTTATTGGAAATCGTTTTAAGACAA
ATGagaaaagactttttgtatTCGAAAGATatggagaaaaaaataccaaa
agatATATTTACCAATTTGGATTGTCCTCCAGGTTTTTGTTGTTATTGTG
AACAACCTGTCTTCACTTGGGCTATCTTCAGCACAAGAGGTGGCTATTTA
AATATATTCTGCTCTGTTATGTGTTTGGAAACTTTTTATAATCGATGGTA
ATTAACCTTGATAGTGCTGACTTACttttaaggaaagaaatttctttcgg
ccaaatttaaatttaaagatcattcgccaaaataaattctcgccaaattt
aattttccttCGATTTAGTTTCTATTTTTCCTAAAAACTCTTTTCCCCct
cttttttcagctaaaatattaaacaaaaatgggtcgttcgcctaaataaa
ttccgccaaattgcatcaaaattggcgaatgggctcatttgccaaaattt
cttcaccTTAAGGTAGTTgggcttttttaaattttaaagtcTCTACTCTT
TTTAAGTGTGTATCATTTCTCATTTTACATTGTCTCAATTTTAGAGCCTG
TTCACATGGATTTTCGGTACGGTTAAGATTCAGACCGATCTGAGATACTC
TCTTGTTTACATGAGGTGTTTCGGTACGGGCTGAATTTTCGATTTCGGTT
TGGGGTGGTCGTCGTACTTTAGCGGGCCGAATATTTTCCAcagacttcaa
aaataaaaatctcagCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044980XLOC_044980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072468-exon-scaffold_78-1491911889:3784..4222TCONS_00072468-exon-scaffold_78-1491911889:3784..4222Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1510915933:3784..4222TCONS_00072468-exon-scaffold_78-1510915933:3784..4222Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1575043694:3784..4222TCONS_00072468-exon-scaffold_78-1575043694:3784..4222Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1491911889:7350..7387TCONS_00072468-exon-scaffold_78-1491911889:7350..7387Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1510915933:7350..7387TCONS_00072468-exon-scaffold_78-1510915933:7350..7387Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1575043694:7350..7387TCONS_00072468-exon-scaffold_78-1575043694:7350..7387Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1491911889:9149..9186TCONS_00072468-exon-scaffold_78-1491911889:9149..9186Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1510915933:9149..9186TCONS_00072468-exon-scaffold_78-1510915933:9149..9186Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1575043694:9149..9186TCONS_00072468-exon-scaffold_78-1575043694:9149..9186Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1491911889:21171..21308TCONS_00072468-exon-scaffold_78-1491911889:21171..21308Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1510915933:21171..21308TCONS_00072468-exon-scaffold_78-1510915933:21171..21308Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1575043694:21171..21308TCONS_00072468-exon-scaffold_78-1575043694:21171..21308Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1491911889:21432..22603TCONS_00072468-exon-scaffold_78-1491911889:21432..22603Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1510915933:21432..22603TCONS_00072468-exon-scaffold_78-1510915933:21432..22603Clytia hemisphaericaexon
TCONS_00072468-exon-scaffold_78-1575043694:21432..22603TCONS_00072468-exon-scaffold_78-1575043694:21432..22603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:3784..22603 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.114324	0	0.51553	0.41679	0.220463	0.787861	0.291405	0	6.45053e-10	0.213482	0.271094	0.0957408	0.309553	0	0.301516	0.411061	0.247869	0.199541	0.757162	0.758707	0.202175	0.569745	0.0481526	6.89834e-09	0.221556	0.13554	0.344173	0.28282
Blast
[Close]
BLAST of TCONS_00072468 vs. Swiss-Prot (Human)
Match: LRC40 (Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.151e-16
Identity = 64/194 (32.99%), Postives = 108/194 (55.67%), Query Frame = 2 
Query:  365 EIPEEILRDLSIG------------KLYLKRNLLRTLTPDIQWMTNLIEINLDSNRITDLPKELKYLKNLETLDVKQNNLKSIPECIYELPKLRMLNLYLNEISFIGKGIGXXXXXXXXXXXXXXVNYLPIELFGCESLINLHLDSNKLNYIPQQITKLKELKELSICCNNLPFLNLNIGSMKNLKSVAFFQNK 910
            +IPEE  ++LS G            KL +  N L++LT D++ +  L  +++  N++T LP  ++ L+NL+ L+V  N LK +PE I  L  L+ L L  NE++ I +G  +L  L+ L+LS+N +  +P       SL+ L+L SN+L  +P +I ++K LK L    N L  +   +  M++L+ +   +NK
Sbjct:   61 DIPEEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNK 254
The following BLAST results are available for this feature:
BLAST of TCONS_00072468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC406.151e-1632.99Leucine-rich repeat-containing protein 40 OS=Homo ... [more]
back to top