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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072467 ID=TCONS_00072467|Name=TCONS_00072467|organism=Clytia hemisphaerica|type=transcript|length=1501bp
GCCGTAAACGTCAAAGGGGACAGAATTCGCTACAATGATGGCTTGGTGTA
CTGTTATGGGAAGTCCTCCGTCTTCATCTATCCTTCAGAAAAGAAATCAA
ACCCCAAGTTATCCATCAGTGCCATAAAAACGAAGAAAGCAGCAGTTGAA
AAGTTGAAATTTATCGGCCTACCATCTGATGGTACAACCTCGCAACTTAT
CACAAGATTACACAAACACCAGTCAGACACAATCAAGAAGTACAAACAGA
TGAAAGTTGAGGAATCAACCTTACTAATTTTCATGGACCATGAGTTATGT
CGATACCAAGTAGACACAATCCTGTTCATTGATACCAACAGTCTATACAT
CGCATTTGGCTCAGAAAAGCTCCTGGCAATCGGATCCTTGAAGTATAATT
CCGTCGGTGTCGAAACAAATTGTGAGGCTTTTCAAAAGTACGATGATGAT
TGGCAAAGCATATCAGACATGGCCATCGTCAAAAAACACCTTATCATTGC
TCACAAGAATGGTTTGTCACTTTTCCACCTTGAGTCACGTGCAATTTCGA
ATGTCCCTCATTGTGATGGATTAACAGCAGATCATCTGGCCCCATTTAGG
GATGGCTTTCTCTTCATTGAAGGGGCTAAAAGGAAAAATTGTATCTACCT
TTGGAGAGAAAGTGGGTTAGAAGTATTTGCAGGCAAACAAGGACAAGATG
GCAGCAGAGATGGTACAGCTTCCTACTGCCGATTTTTTGAAGTATCTTCC
ATAACAGTCGAGTTCAATAATGTGGTATATGCATCAGACCGCAAACTTGG
ATCCATTAAAGTAATCACCGAGCTGAATGAAACGGCGAATTTCCTGCGTG
GGTTGAAGAAGATGATAGATGCTTTCTCCGTTCATGAAAAGCATCAAGCC
TATTCTTTGAAGTCTTTGGATGAAGCCATCTCGTTGGTTTCTCAATGCGA
CGAAATGTTATCAAAGAACACAGAAGTTATTCGCTCAATGGGAAACCTAC
CGCGCACATTGAATGGTCCTGAGGGAAATGTTTCCGCTATTACCATCGAC
TCGATCAAAATGCTTCATTGGGGCTTAAAACGTCTAAAGACAAACACAGA
AAGTCTCACGTATGACCGAGTCAATTTGCTGAGTTGTATGACCCTTGCCG
TTGAGAACTTGCACTCAGCCGTCAATAAAAAGCAAGGAACGCAAACCCTC
GTATCGTATGCTCAATCGTTTGCTTCGTCAGTCAAGGAATCTATCAAATC
TGCCACCGAATGGAGCGCCCATTATTTCACCTCAAGGGAAAGATGGTATC
CGCTTCCCAACACAGTGCTGTCATTGAGTGACTTGGATTTCCCGAAACGA
GCAAAGAGAAACCAAGGGCTCACCAGAGAACAAAAACGAGAGATGAGAGA
GTGGGCATCCATAAATGGAGCAGTGGTGCGCCAACGTAGTGGAAGACAGG
AAACGACCATGGCTAGAGCAGGCACGTTACCAGAAAATGCTTACTACGAA
G Run BLAST on NCBI protein sequence of TCONS_00072467-protein >TCONS_00072467-protein ID=TCONS_00072467-protein|Name=TCONS_00072467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
AVNVKGDRIRYNDGLVYCYGKSSVFIYPSEKKSNPKLSISAIKTKKAAVE
KLKFIGLPSDGTTSQLITRLHKHQSDTIKKYKQMKVEESTLLIFMDHELC
RYQVDTILFIDTNSLYIAFGSEKLLAIGSLKYNSVGVETNCEAFQKYDDD
WQSISDMAIVKKHLIIAHKNGLSLFHLESRAISNVPHCDGLTADHLAPFR
DGFLFIEGAKRKNCIYLWRESGLEVFAGKQGQDGSRDGTASYCRFFEVSS
ITVEFNNVVYASDRKLGSIKVITELNETANFLRGLKKMIDAFSVHEKHQA
YSLKSLDEAISLVSQCDEMLSKNTEVIRSMGNLPRTLNGPEGNVSAITID
SIKMLHWGLKRLKTNTESLTYDRVNLLSCMTLAVENLHSAVNKKQGTQTL
VSYAQSFASSVKESIKSATEWSAHYFTSRERWYPLPNTVLSLSDLDFPKR
AKRNQGLTREQKREMREWASINGAVVRQRSGRQETTMARAGTLPENAYYE Run BLAST on NCBI transcript from alignment at scaffold_77:548463..549963 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072467 ID=TCONS_00072467|Name=TCONS_00072467|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at scaffold_77:548463..549963 (Clytia hemisphaerica)
CTTCGTAGTAAGCATTTTCTGGTAACGTGCCTGCTCTAGCCATGGTCGTT
TCCTGTCTTCCACTACGTTGGCGCACCACTGCTCCATTTATGGATGCCCA
CTCTCTCATCTCTCGTTTTTGTTCTCTGGTGAGCCCTTGGTTTCTCTTTG
CTCGTTTCGGGAAATCCAAGTCACTCAATGACAGCACTGTGTTGGGAAGC
GGATACCATCTTTCCCTTGAGGTGAAATAATGGGCGCTCCATTCGGTGGC
AGATTTGATAGATTCCTTGACTGACGAAGCAAACGATTGAGCATACGATA
CGAGGGTTTGCGTTCCTTGCTTTTTATTGACGGCTGAGTGCAAGTTCTCA
ACGGCAAGGGTCATACAACTCAGCAAATTGACTCGGTCATACGTGAGACT
TTCTGTGTTTGTCTTTAGACGTTTTAAGCCCCAATGAAGCATTTTGATCG
AGTCGATGGTAATAGCGGAAACATTTCCCTCAGGACCATTCAATGTGCGC
GGTAGGTTTCCCATTGAGCGAATAACTTCTGTGTTCTTTGATAACATTTC
GTCGCATTGAGAAACCAACGAGATGGCTTCATCCAAAGACTTCAAAGAAT
AGGCTTGATGCTTTTCATGAACGGAGAAAGCATCTATCATCTTCTTCAAC
CCACGCAGGAAATTCGCCGTTTCATTCAGCTCGGTGATTACTTTAATGGA
TCCAAGTTTGCGGTCTGATGCATATACCACATTATTGAACTCGACTGTTA
TGGAAGATACTTCAAAAAATCGGCAGTAGGAAGCTGTACCATCTCTGCTG
CCATCTTGTCCTTGTTTGCCTGCAAATACTTCTAACCCACTTTCTCTCCA
AAGGTAGATACAATTTTTCCTTTTAGCCCCTTCAATGAAGAGAAAGCCAT
CCCTAAATGGGGCCAGATGATCTGCTGTTAATCCATCACAATGAGGGACA
TTCGAAATTGCACGTGACTCAAGGTGGAAAAGTGACAAACCATTCTTGTG
AGCAATGATAAGGTGTTTTTTGACGATGGCCATGTCTGATATGCTTTGCC
AATCATCATCGTACTTTTGAAAAGCCTCACAATTTGTTTCGACACCGACG
GAATTATACTTCAAGGATCCGATTGCCAGGAGCTTTTCTGAGCCAAATGC
GATGTATAGACTGTTGGTATCAATGAACAGGATTGTGTCTACTTGGTATC
GACATAACTCATGGTCCATGAAAATTAGTAAGGTTGATTCCTCAACTTTC
ATCTGTTTGTACTTCTTGATTGTGTCTGACTGGTGTTTGTGTAATCTTGT
GATAAGTTGCGAGGTTGTACCATCAGATGGTAGGCCGATAAATTTCAACT
TTTCAACTGCTGCTTTCTTCGTTTTTATGGCACTGATGGATAACTTGGGG
TTTGATTTCTTTTCTGAAGGATAGATGAAGACGGAGGACTTCCCATAACA
GTACACCAAGCCATCATTGTAGCGAATTCTGTCCCCTTTGACGTTTACGG
C Coding sequence (CDS) from alignment at scaffold_77:548463..549963 >TCONS_00072467 ID=TCONS_00072467|Name=TCONS_00072467|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_77:548463..549963 (Clytia hemisphaerica)
TTCGTAGTAAGCATTTTCTGGTAACGTGCCTGCTCTAGCCATGGTCGTTT
CCTGTCTTCCACTACGTTGGCGCACCACTGCTCCATTTATGGATGCCCAC
TCTCTCATCTCTCGTTTTTGTTCTCTGGTGAGCCCTTGGTTTCTCTTTGC
TCGTTTCGGGAAATCCAAGTCACTCAATGACAGCACTGTGTTGGGAAGCG
GATACCATCTTTCCCTTGAGGTGAAATAATGGGCGCTCCATTCGGTGGCA
GATTTGATAGATTCCTTGACTGACGAAGCAAACGATTGAGCATACGATAC
GAGGGTTTGCGTTCCTTGCTTTTTATTGACGGCTGAGTGCAAGTTCTCAA
CGGCAAGGGTCATACAACTCAGCAAATTGACTCGGTCATACGTGAGACTT
TCTGTGTTTGTCTTTAGACGTTTTAAGCCCCAATGAAGCATTTTGATCGA
GTCGATGGTAATAGCGGAAACATTTCCCTCAGGACCATTCAATGTGCGCG
GTAGGTTTCCCATTGAGCGAATAACTTCTGTGTTCTTTGATAACATTTCG
TCGCATTGAGAAACCAACGAGATGGCTTCATCCAAAGACTTCAAAGAATA
GGCTTGATGCTTTTCATGAACGGAGAAAGCATCTATCATCTTCTTCAACC
CACGCAGGAAATTCGCCGTTTCATTCAGCTCGGTGATTACTTTAATGGAT
CCAAGTTTGCGGTCTGATGCATATACCACATTATTGAACTCGACTGTTAT
GGAAGATACTTCAAAAAATCGGCAGTAGGAAGCTGTACCATCTCTGCTGC
CATCTTGTCCTTGTTTGCCTGCAAATACTTCTAACCCACTTTCTCTCCAA
AGGTAGATACAATTTTTCCTTTTAGCCCCTTCAATGAAGAGAAAGCCATC
CCTAAATGGGGCCAGATGATCTGCTGTTAATCCATCACAATGAGGGACAT
TCGAAATTGCACGTGACTCAAGGTGGAAAAGTGACAAACCATTCTTGTGA
GCAATGATAAGGTGTTTTTTGACGATGGCCATGTCTGATATGCTTTGCCA
ATCATCATCGTACTTTTGAAAAGCCTCACAATTTGTTTCGACACCGACGG
AATTATACTTCAAGGATCCGATTGCCAGGAGCTTTTCTGAGCCAAATGCG
ATGTATAGACTGTTGGTATCAATGAACAGGATTGTGTCTACTTGGTATCG
ACATAACTCATGGTCCATGAAAATTAGTAAGGTTGATTCCTCAACTTTCA
TCTGTTTGTACTTCTTGATTGTGTCTGACTGGTGTTTGTGTAATCTTGTG
ATAAGTTGCGAGGTTGTACCATCAGATGGTAGGCCGATAAATTTCAACTT
TTCAACTGCTGCTTTCTTCGTTTTTATGGCACTGATGGATAACTTGGGGT
TTGATTTCTTTTCTGAAGGATAGATGAAGACGGAGGACTTCCCATAACAG
TACACCAAGCCATCATTGTAGCGAATTCTGTCCCCTTTGACGTTTACGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072467-exon-scaffold_77-1491911889:548463..549963 | TCONS_00072467-exon-scaffold_77-1491911889:548463..549963 | Clytia hemisphaerica | exon |
| TCONS_00072467-exon-scaffold_77-1510915933:548463..549963 | TCONS_00072467-exon-scaffold_77-1510915933:548463..549963 | Clytia hemisphaerica | exon |
| TCONS_00072467-exon-scaffold_77-1575043694:548463..549963 | TCONS_00072467-exon-scaffold_77-1575043694:548463..549963 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:548463..549963 . |
Blast
The following BLAST results are available for this feature:
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