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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072461 ID=TCONS_00072461|Name=TCONS_00072461|organism=Clytia hemisphaerica|type=transcript|length=927bp
CCATCAAGCAGCGAAGATGAAATTGGTCACcatttgctttctttttcttt
ccatCCAGCTTGGAGAATGTATCAGTGCACTGGGAGGGATGAACTCTGTC
GATGGAGGAAATTTGCCAGAATGTAAACCTGCAATGACCAAACTGTTTAC
CTTCCAGAAGATGCATTATGACTTGAAGAATGTGGAGCAATCCAAAAAGT
TGTATTACTCTGAGAAATATTCATGCAAAGCCAACACTGGTGCTATTAGA
TTCAGGATCTCCGAAAACAGATGCACTTATTACATTTCTTCAACCTTCGA
AGAGCAAGTAGACGGGAACACCATTTCTCAAGACTATAACAAGACCGTTA
ACACACTTGTTGTTGTAAACGGACAGGTCATGGCAGAGGCTATCTTTGAC
CGAAGTGCAATTCACCGTGGTAAACAAAGCAACCATCTCGAAAGAAGAAT
CATCAATTCGGAATTTCAATGCGAGAGCGAAGACACAGATGTGGTATGCA
AGGCTGATGTTTACCTGACGGAATATCGTATCCCTTACAGAGCAGTGTTC
GGTTTGAATACCTACCAATGTCAACGAGAGGGCATGTATGTCATCAAAAA
CTACCCTGATGTTGTTTTCAATAAAGAAGCTTTATAAAATGTCCACCGAG
AATGACGTATGAGACCATTAAAAAAAGAACTTGGTAACTAAAATAAACAT
GAGCATTAACAGTTTGTGCTTTAATACCACAGCAACTGAGTCCAAATTGC
AGACCCTTACAAAACCTACAAAGAATTTTTTAGTGGATGCCAGAAGccga
atacaccttttcgaccgtagtcgcgcggtcagacgCGTGTCACTTTAtca
tttaattatccccctaaactcgatccattccttttttacacctttttcta
ttaaCTATAGAGGTGcgaaaagactgg Run BLAST on NCBI protein sequence of TCONS_00072461-protein >TCONS_00072461-protein ID=TCONS_00072461-protein|Name=TCONS_00072461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
HQAAKMKLVTICFLFLSIQLGECISALGGMNSVDGGNLPECKPAMTKLFT
FQKMHYDLKNVEQSKKLYYSEKYSCKANTGAIRFRISENRCTYYISSTFE
EQVDGNTISQDYNKTVNTLVVVNGQVMAEAIFDRSAIHRGKQSNHLERRI
INSEFQCESEDTDVVCKADVYLTEYRIPYRAVFGLNTYQCQREGMYVIKN
YPDVVFNKEAL Run BLAST on NCBI transcript from alignment at scaffold_77:241174..242100 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072461 ID=TCONS_00072461|Name=TCONS_00072461|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at scaffold_77:241174..242100 (Clytia hemisphaerica)
ccagtcttttcgCACCTCTATAGttaatagaaaaaggtgtaaaaaaggaa
tggatcgagtttagggggataattaaatgaTAAAGTGACACGcgtctgac
cgcgcgactacggtcgaaaaggtgtattcggCTTCTGGCATCCACTAAAA
AATTCTTTGTAGGTTTTGTAAGGGTCTGCAATTTGGACTCAGTTGCTGTG
GTATTAAAGCACAAACTGTTAATGCTCATGTTTATTTTAGTTACCAAGTT
CTTTTTTTAATGGTCTCATACGTCATTCTCGGTGGACATTTTATAAAGCT
TCTTTATTGAAAACAACATCAGGGTAGTTTTTGATGACATACATGCCCTC
TCGTTGACATTGGTAGGTATTCAAACCGAACACTGCTCTGTAAGGGATAC
GATATTCCGTCAGGTAAACATCAGCCTTGCATACCACATCTGTGTCTTCG
CTCTCGCATTGAAATTCCGAATTGATGATTCTTCTTTCGAGATGGTTGCT
TTGTTTACCACGGTGAATTGCACTTCGGTCAAAGATAGCCTCTGCCATGA
CCTGTCCGTTTACAACAACAAGTGTGTTAACGGTCTTGTTATAGTCTTGA
GAAATGGTGTTCCCGTCTACTTGCTCTTCGAAGGTTGAAGAAATGTAATA
AGTGCATCTGTTTTCGGAGATCCTGAATCTAATAGCACCAGTGTTGGCTT
TGCATGAATATTTCTCAGAGTAATACAACTTTTTGGATTGCTCCACATTC
TTCAAGTCATAATGCATCTTCTGGAAGGTAAACAGTTTGGTCATTGCAGG
TTTACATTCTGGCAAATTTCCTCCATCGACAGAGTTCATCCCTCCCAGTG
CACTGATACATTCTCCAAGCTGGatggaaagaaaaagaaagcaaatgGTG
ACCAATTTCATCTTCGCTGCTTGATGG Coding sequence (CDS) from alignment at scaffold_77:241174..242100 >TCONS_00072461 ID=TCONS_00072461|Name=TCONS_00072461|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_77:241174..242100 (Clytia hemisphaerica)
TTATAAAGCTTCTTTATTGAAAACAACATCAGGGTAGTTTTTGATGACAT
ACATGCCCTCTCGTTGACATTGGTAGGTATTCAAACCGAACACTGCTCTG
TAAGGGATACGATATTCCGTCAGGTAAACATCAGCCTTGCATACCACATC
TGTGTCTTCGCTCTCGCATTGAAATTCCGAATTGATGATTCTTCTTTCGA
GATGGTTGCTTTGTTTACCACGGTGAATTGCACTTCGGTCAAAGATAGCC
TCTGCCATGACCTGTCCGTTTACAACAACAAGTGTGTTAACGGTCTTGTT
ATAGTCTTGAGAAATGGTGTTCCCGTCTACTTGCTCTTCGAAGGTTGAAG
AAATGTAATAAGTGCATCTGTTTTCGGAGATCCTGAATCTAATAGCACCA
GTGTTGGCTTTGCATGAATATTTCTCAGAGTAATACAACTTTTTGGATTG
CTCCACATTCTTCAAGTCATAATGCATCTTCTGGAAGGTAAACAGTTTGG
TCATTGCAGGTTTACATTCTGGCAAATTTCCTCCATCGACAGAGTTCATC
CCTCCCAGTGCACTGATACATTCTCCAAGCTGGatggaaagaaaaagaaa
gcaaatgGTGACCAATTTCATCTTCGCTGCTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072461-exon-scaffold_77-1491911889:241174..242100 | TCONS_00072461-exon-scaffold_77-1491911889:241174..242100 | Clytia hemisphaerica | exon |
| TCONS_00072461-exon-scaffold_77-1510915933:241174..242100 | TCONS_00072461-exon-scaffold_77-1510915933:241174..242100 | Clytia hemisphaerica | exon |
| TCONS_00072461-exon-scaffold_77-1575043694:241174..242100 | TCONS_00072461-exon-scaffold_77-1575043694:241174..242100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:241174..242100 . |
Blast
The following BLAST results are available for this feature:
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