TCONS_00072458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072458
Unique NameTCONS_00072458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072458 ID=TCONS_00072458|Name=TCONS_00072458|organism=Clytia hemisphaerica|type=transcript|length=869bp
TACATACTAATTTTGTTTAAGAGATTAATTTGAAGCGGCAATTCGAAGTA
ATATTGATCCAATTTTGCGATATTGTAGAATTTATTAAATTGCCAAACGG
ATAAATCATTTTTATAATGTTCCaaaaaatttaaacgaaaagaaaaagtt
tcccACTGGCTCGAATAAAAATGTACAAATTTATGTAAAGGATTGTAAAA
TCAATTCTCTTCAGACCTTTAGAGCCAAAGAAACTTAAGGCCGGTCttca
ctttcgcgcgaaatgggcaaCAACTTTTTGtgaacaaacaaaaaaagttg
aaggaattGTCATTATAACTTAAAATGCTCTTGGAATCGTAATCCCATTC
CACTATCGATATACCTACTTTCGAAATCACTTTGGAAGGCATTTAAGTCA
AATCATCATACACTATCCAAAAGGTAATTTGCTTTTGTTCCGTAAATTCT
TTAACTGTTGACCATGCAGCGTTGATAAAATTTCACATTGTTTTTGCCTC
AATAAAGGAGTTCTTTCCTGGTTTCTTTAAACAGTCACACAGTGTTTTGG
TAGAATATTAAAATCGTAAACAGTACTCTATAAATCACTGTCACGCAACC
TCTTTCGCAACGCAATTAAAATCACATGCTTTTGATAGAAAGTTCCGATT
GATTTGATAATTTACTTGgcagtgattgattgattgcCAAATTTAACAGC
CCTTAACACTAAAGGATGGTGGTCTGATCAATTGCCAATTTCAACAGACC
TTCTTGTATTCAAAAGTAATTCTGATCTAAAATGAAAGCAATTCAGAACT
CAGTTTTTCACACCAGCACCCCTTTTCACTTTCCATTCCAAGAAAGACAC
GAACGTGGAAATCGCAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_77:122606..123474

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072458 ID=TCONS_00072458|Name=TCONS_00072458|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at scaffold_77:122606..123474 (Clytia hemisphaerica)
ACCTGCGATTTCCACGTTCGTGTCTTTCTTGGAATGGAAAGTGAAAAGGG
GTGCTGGTGTGAAAAACTGAGTTCTGAATTGCTTTCATTTTAGATCAGAA
TTACTTTTGAATACAAGAAGGTCTGTTGAAATTGGCAATTGATCAGACCA
CCATCCTTTAGTGTTAAGGGCTGTTAAATTTGgcaatcaatcaatcactg
cCAAGTAAATTATCAAATCAATCGGAACTTTCTATCAAAAGCATGTGATT
TTAATTGCGTTGCGAAAGAGGTTGCGTGACAGTGATTTATAGAGTACTGT
TTACGATTTTAATATTCTACCAAAACACTGTGTGACTGTTTAAAGAAACC
AGGAAAGAACTCCTTTATTGAGGCAAAAACAATGTGAAATTTTATCAACG
CTGCATGGTCAACAGTTAAAGAATTTACGGAACAAAAGCAAATTACCTTT
TGGATAGTGTATGATGATTTGACTTAAATGCCTTCCAAAGTGATTTCGAA
AGTAGGTATATCGATAGTGGAATGGGATTACGATTCCAAGAGCATTTTAA
GTTATAATGACaattccttcaactttttttgtttgttcaCAAAAAGTTGt
tgcccatttcgcgcgaaagtgaaGACCGGCCTTAAGTTTCTTTGGCTCTA
AAGGTCTGAAGAGAATTGATTTTACAATCCTTTACATAAATTTGTACATT
TTTATTCGAGCCAGTgggaaactttttcttttcgtttaaattttttGGAA
CATTATAAAAATGATTTATCCGTTTGGCAATTTAATAAATTCTACAATAT
CGCAAAATTGGATCAATATTACTTCGAATTGCCGCTTCAAATTAATCTCT
TAAACAAAATTAGTATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044970XLOC_044970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072458-exon-scaffold_77-1491911889:122606..123474TCONS_00072458-exon-scaffold_77-1491911889:122606..123474Clytia hemisphaericaexon
TCONS_00072458-exon-scaffold_77-1510915933:122606..123474TCONS_00072458-exon-scaffold_77-1510915933:122606..123474Clytia hemisphaericaexon
TCONS_00072458-exon-scaffold_77-1575043694:122606..123474TCONS_00072458-exon-scaffold_77-1575043694:122606..123474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:122606..123474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.121726	0.178635	0.0724905	0	0.207328	0.0646994	0.452976	0.0561084	0.217841	0.1432	0.178751	0	0	0	0	0.0827211	0.0571419	0	0.727616	0.684461	0.616335	0.336203	0.288567	0.103016	0.589661	0.314651	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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