TCONS_00072457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072457
Unique NameTCONS_00072457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=transcript|length=3140bp
AACACAATATAAAATTGTTATCTTTTTCACagcttatactttttttatca
tAGAAGATTATATTTTCcaacttttctttccaaaacTGGCTGAATGGGGA
GACACAATTAGCGAATCCAAAGAAAAGAGAATAGTTTTTCTCATCACTGA
ATTTATAAACTGTATTTTAAACGATTTGATAAAAAGGTTTTACATTCTAT
TCATCCCATCTTCCAAGAGgaattttattagtttttttttatagttCCCC
CCTTGGTAGAGATTAAGGAAAGTGATTTCTCCCTCAAATCAAACAGTAGG
ATCAATGCTGATAATCTGGACTTGATTGAGATTTCGTTACAGTAAAAAGT
ATTCTTTAGTCGCATTCCTCAGATGGTTAATCGACCGCCTTTGAAATCAT
GATTAGTTTTTTTGGTTCTTTAAGTTGAAATATTTAGGTTTTGCAATTCC
TTATTGGCTTTTGACCAGATTTATGGTCTAACCGGATTGacttattcttg
atatgcgtaagtcaagatgatgTCATATTTTCAacggaagcacccgaaaa
aagccggattttgacctccgtgtttctatttttagtaacagagaggggtC
AAATTCCGGATTTCTTCGGGTAATTCCGCTAGAAAATGagttacgcatat
caagaattggtTTTCCATAGCACTACTGAACATAATATTGTTTAACCAAA
TgatcgattttttttttgttatgaaaGGGATAActagataaaaaaatgaa
attcggCCTAAAAGAAACCTTTTTTATGGTCCTGATTAAAACTGCCAAAT
ATCTCTACTTACTAACATTCCAAAGCTGTAAAGATGAAATGGTGTGAAAT
CTCTGAATTTCgtagaatttctttttttttttcttgagcaaaaatttgaa
attaaaacccAAATATCTTGTTTTTGAAATAGGCAGAAATTCTTAAACCG
AATTTCAATTTTATCTGGATATTCCTTTAATTATTATACCTGTACATGTT
GCTTGGTTATAAAGGTCTATTTACATCAAATGTTCTCgattaataaaaat
tcaaagtcCGTAGTTCAATCACTCTTGagaaaataaagcaaaattgtTAG
CTTCAATTTATAATCACTAAATAACATCTGAAGTTATAGGTTTTAAGGAA
TAGCGTCTACTAAAGGAAATAATGATGTATTGTAATGCTTTTGCTATCTT
CTGCTTCTAATACCGTTTCTAAAAGTGTCAACATCTTGTGTCATCAATCT
AATCTGCTCAAAGAGCTTTAGTTCGGAAGCTTTTAAGCAGCTCATGGCAT
CCCTCTATCCTACATAGTGGATCACGTCTCGACTTCTTGTGTACCTTCAT
CAGAATATCGGATATCGGTCATTGAAAccatttttctctttctttttctt
catcatcaaTTGATCAGTCTCTTTCTCATCTTTCTCGCTACCTGAGCTTT
TAAAGTATGTCCAATATTTGGTGACGTCATATCCAATACCAATCAACATC
AAACCTGCCACTGCACCCAAAAGGATTTGTATGTAGATGTTGTGAAAAAC
TAAATCACTCATTGAACCTATGTACAAAGTGTCTGTGTGACAGTATTGTT
GAAAAGCTTGTATAGAATAGGTGTACACTTCGTCTTTAGCATAATACATa
catttgaaaatctttttcatttgaacTGCCAAGTCAGCAGGTAAATAGCA
ATTGATGTATAAGTTAGCAGGTAGTTTTTCGACGATTTTCAAAGGTACTA
AAGCAGTATTATCGTTAATTTCATCCTGGTACCAAGCCGCTACGTCCGCG
TTCATCATACCTGCGAACACATCTCCTTTCCGAACCATCTCTAAAACTTG
ATCGTATGATTCGGCGCGCACCACTTTCGCACGATAGTCTTTCTCTGCTG
TTTTCTCTTCAAATGAATTCTCGAGAACGGAGACTCGTTTGTTCAAGACG
TTCAAATCTTTTACGCCCGTGACAATATCAGTCATTGTGGCGGTCATTAT
ACACCCAACCATCACGCCCACAAATAACCAAATACAGGCAATAAATCGCC
CGATCGGATTTTTTGGTGTGATATCTCCGTAGCCTACTGTTGTCATGGAG
ACAATAGCCCAATAAAGTCCAGTCCCTAAGCCTTTAATAAAGGAATTTGG
AAGTTCTTTACTTTGTTGGCGTTCGATCACCCAAAGCACCAAACCGAACA
AAATTGCCATCAAGATAGCTAGGAAGAAAATTTGTTGACAGCTTAAAATA
CCCCGGATGATTTTATTCGGGAGAGAGATCATTTCCCGACGAACGATAAC
AGCAATCTTGTCTGACTTCATGAGTTGAAAAACACGGAGATTTCGTTTGC
TGACGAAATCATCCACTTTCTTGTTGGAGTAGGCGACCACTGGAATCCAA
AAAGCGTTATTCTGGCGGATCTCACTCAACTCTCCTTCTTGGTATCCCAC
ATCAGAACGcgctaaattgtaaaaatgttttCGGCTGCCGGCTCTTTTGA
CGTAAttgatcattttgatggaatgGTTGTTAGGGATACAGTAAGCTTGT
GCTTGTTGGAACATCAATGGTATGATTCCATCAATTTCACCCTTGGCATT
GTAGAAGATGAAAGGTTTCTGTTCCCAGTATACGACATCCATTAGAACGG
TCTCTTTCGTTTTTGTGTTCTCATTATCGTGGTTGGTGGTTGCAGAAGTG
TTGCCAGATGTTGTCTCTTGAGTTACGTTTGTTGTTGGAGTCGTTCCAGG
TTGTGCTGTAGGGATCGCCCATAGTGTTGCGCAACAACTACAGCCAATCA
AAAAGAGGTTAAATGTGAACCAAGCTGTCATTTTCAGTAAATATCCGATG
CTTTTGTATATAGACGGGTTGAGTGAAGTCAGCAGAATGAATTTCGAACT
CCCATGGTTGTGCTTTTTATGGCAGTCTCGAGAATTATAAATGAGATATA
TTTTTATATAGATACCTAGATAAGAAGTGACAGTGAAGCGATattaaaaa
ttaattgaaaattgatttagaATCCAGAAAAGGATAAATAGAACAGTCAT
TTTAATAGCAAGCCTGAGACGGAAATTAAGGCGAGTTAATGGTGACAGTT
TGGACACGGTAAAGATTAATTCAAAGTTGGAGATTTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00072457-protein

>TCONS_00072457-protein ID=TCONS_00072457-protein|Name=TCONS_00072457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MTAWFTFNLFLIGCSCCATLWAIPTAQPGTTPTTNVTQETTSGNTSATTN
HDNENTKTKETVLMDVVYWEQKPFIFYNAKGEIDGIIPLMFQQAQAYCIP
NNHSIKMINYVKRAGSRKHFYNLARSDVGYQEGELSEIRQNNAFWIPVVA
YSNKKVDDFVSKRNLRVFQLMKSDKIAVIVRREMISLPNKIIRGILSCQQ
IFFLAILMAILFGLVLWVIERQQSKELPNSFIKGLGTGLYWAIVSMTTVG
YGDITPKNPIGRFIACIWLFVGVMVGCIMTATMTDIVTGVKDLNVLNKRV
SVLENSFEEKTAEKDYRAKVVRAESYDQVLEMVRKGDVFAGMMNADVAAW
YQDEINDNTALVPLKIVEKLPANLYINCYLPADLAVQMKKIFKCMYYAKD
EVYTYSIQAFQQYCHTDTLYIGSMSDLVFHNIYIQILLGAVAGLMLIGIG
YDVTKYWTYFKSSGSEKDEKETDQLMMKKKKEKNGFNDRYPIF
Run BLAST on NCBI

transcript from alignment at scaffold_77:119372..122511

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at scaffold_77:119372..122511 (Clytia hemisphaerica)
GGAGAAATCTCCAACTTTGAATTAATCTTTACCGTGTCCAAACTGTCACC ATTAACTCGCCTTAATTTCCGTCTCAGGCTTGCTATTAAAATGACTGTTC TATTTATCCTTTTCTGGATtctaaatcaattttcaattaatttttaatAT CGCTTCACTGTCACTTCTTATCTAGGTATCTATATAAAAATATATCTCAT TTATAATTCTCGAGACTGCCATAAAAAGCACAACCATGGGAGTTCGAAAT TCATTCTGCTGACTTCACTCAACCCGTCTATATACAAAAGCATCGGATAT TTACTGAAAATGACAGCTTGGTTCACATTTAACCTCTTTTTGATTGGCTG TAGTTGTTGCGCAACACTATGGGCGATCCCTACAGCACAACCTGGAACGA CTCCAACAACAAACGTAACTCAAGAGACAACATCTGGCAACACTTCTGCA ACCACCAACCACGATAATGAGAACACAAAAACGAAAGAGACCGTTCTAAT GGATGTCGTATACTGGGAACAGAAACCTTTCATCTTCTACAATGCCAAGG GTGAAATTGATGGAATCATACCATTGATGTTCCAACAAGCACAAGCTTAC TGTATCCCTAACAACcattccatcaaaatgatcaaTTACGTCAAAAGAGC CGGCAGCCGaaaacatttttacaatttagcgCGTTCTGATGTGGGATACC AAGAAGGAGAGTTGAGTGAGATCCGCCAGAATAACGCTTTTTGGATTCCA GTGGTCGCCTACTCCAACAAGAAAGTGGATGATTTCGTCAGCAAACGAAA TCTCCGTGTTTTTCAACTCATGAAGTCAGACAAGATTGCTGTTATCGTTC GTCGGGAAATGATCTCTCTCCCGAATAAAATCATCCGGGGTATTTTAAGC TGTCAACAAATTTTCTTCCTAGCTATCTTGATGGCAATTTTGTTCGGTTT GGTGCTTTGGGTGATCGAACGCCAACAAAGTAAAGAACTTCCAAATTCCT TTATTAAAGGCTTAGGGACTGGACTTTATTGGGCTATTGTCTCCATGACA ACAGTAGGCTACGGAGATATCACACCAAAAAATCCGATCGGGCGATTTAT TGCCTGTATTTGGTTATTTGTGGGCGTGATGGTTGGGTGTATAATGACCG CCACAATGACTGATATTGTCACGGGCGTAAAAGATTTGAACGTCTTGAAC AAACGAGTCTCCGTTCTCGAGAATTCATTTGAAGAGAAAACAGCAGAGAA AGACTATCGTGCGAAAGTGGTGCGCGCCGAATCATACGATCAAGTTTTAG AGATGGTTCGGAAAGGAGATGTGTTCGCAGGTATGATGAACGCGGACGTA GCGGCTTGGTACCAGGATGAAATTAACGATAATACTGCTTTAGTACCTTT GAAAATCGTCGAAAAACTACCTGCTAACTTATACATCAATTGCTATTTAC CTGCTGACTTGGCAgttcaaatgaaaaagattttcaaatgtATGTATTAT GCTAAAGACGAAGTGTACACCTATTCTATACAAGCTTTTCAACAATACTG TCACACAGACACTTTGTACATAGGTTCAATGAGTGATTTAGTTTTTCACA ACATCTACATACAAATCCTTTTGGGTGCAGTGGCAGGTTTGATGTTGATT GGTATTGGATATGACGTCACCAAATATTGGACATACTTTAAAAGCTCAGG TAGCGAGAAAGATGAGAAAGAGACTGATCAAttgatgatgaagaaaaaga aagagaaaaatggTTTCAATGACCGATATCCGATATTCTGATGAAGGTAC ACAAGAAGTCGAGACGTGATCCACTATGTAGGATAGAGGGATGCCATGAG CTGCTTAAAAGCTTCCGAACTAAAGCTCTTTGAGCAGATTAGATTGATGA CACAAGATGTTGACACTTTTAGAAACGGTATTAGAAGCAGAAGATAGCAA AAGCATTACAATACATCATTATTTCCTTTAGTAGACGCTATTCCTTAAAA CCTATAACTTCAGATGTTATTTAGTGATTATAAATTGAAGCTAacaattt tgctttattttctCAAGAGTGATTGAACTACGgactttgaatttttatta atcGAGAACATTTGATGTAAATAGACCTTTATAACCAAGCAACATGTACA GGTATAATAATTAAAGGAATATCCAGATAAAATTGAAATTCGGTTTAAGA ATTTCTGCCTATTTCAAAAACAAGATATTTgggttttaatttcaaatttt tgctcaagaaaaaaaaaaagaaattctacGAAATTCAGAGATTTCACACC ATTTCATCTTTACAGCTTTGGAATGTTAGTAAGTAGAGATATTTGGCAGT TTTAATCAGGACCATAAAAAAGGTTTCTTTTAGGccgaatttcatttttt tatctagTTATCCCtttcataacaaaaaaaaaatcgatcATTTGGTTAAA CAATATTATGTTCAGTAGTGCTATGGAAAaccaattcttgatatgcgtaa ctCATTTTCTAGCGGAATTACCCGAAGAAATCCGGAATTTGacccctctc tgttactaaaaatagaaacacggaggtcaaaatccggcttttttcgggtg cttccgtTGAAAATATGAcatcatcttgacttacgcatatcaagaataag tCAATCCGGTTAGACCATAAATCTGGTCAAAAGCCAATAAGGAATTGCAA AACCTAAATATTTCAACTTAAAGAACCAAAAAAACTAATCATGATTTCAA AGGCGGTCGATTAACCATCTGAGGAATGCGACTAAAGAATACTTTTTACT GTAACGAAATCTCAATCAAGTCCAGATTATCAGCATTGATCCTACTGTTT GATTTGAGGGAGAAATCACTTTCCTTAATCTCTACCAAGGGGGGaactat aaaaaaaaactaataaaattcCTCTTGGAAGATGGGATGAATAGAATGTA AAACCTTTTTATCAAATCGTTTAAAATACAGTTTATAAATTCAGTGATGA GAAAAACTATTCTCTTTTCTTTGGATTCGCTAATTGTGTCTCCCCATTCA GCCAgttttggaaagaaaagttgGAAAATATAATCTTCTatgataaaaaa agtataagctGTGAAAAAGATAACAATTTTATATTGTGTT

Coding sequence (CDS) from alignment at scaffold_77:119372..122511

>TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_77:119372..122511 (Clytia hemisphaerica)
ATGACAGCTTGGTTCACATTTAACCTCTTTTTGATTGGCTGTAGTTGTTG
CGCAACACTATGGGCGATCCCTACAGCACAACCTGGAACGACTCCAACAA
CAAACGTAACTCAAGAGACAACATCTGGCAACACTTCTGCAACCACCAAC
CACGATAATGAGAACACAAAAACGAAAGAGACCGTTCTAATGGATGTCGT
ATACTGGGAACAGAAACCTTTCATCTTCTACAATGCCAAGGGTGAAATTG
ATGGAATCATACCATTGATGTTCCAACAAGCACAAGCTTACTGTATCCCT
AACAACcattccatcaaaatgatcaaTTACGTCAAAAGAGCCGGCAGCCG
aaaacatttttacaatttagcgCGTTCTGATGTGGGATACCAAGAAGGAG
AGTTGAGTGAGATCCGCCAGAATAACGCTTTTTGGATTCCAGTGGTCGCC
TACTCCAACAAGAAAGTGGATGATTTCGTCAGCAAACGAAATCTCCGTGT
TTTTCAACTCATGAAGTCAGACAAGATTGCTGTTATCGTTCGTCGGGAAA
TGATCTCTCTCCCGAATAAAATCATCCGGGGTATTTTAAGCTGTCAACAA
ATTTTCTTCCTAGCTATCTTGATGGCAATTTTGTTCGGTTTGGTGCTTTG
GGTGATCGAACGCCAACAAAGTAAAGAACTTCCAAATTCCTTTATTAAAG
GCTTAGGGACTGGACTTTATTGGGCTATTGTCTCCATGACAACAGTAGGC
TACGGAGATATCACACCAAAAAATCCGATCGGGCGATTTATTGCCTGTAT
TTGGTTATTTGTGGGCGTGATGGTTGGGTGTATAATGACCGCCACAATGA
CTGATATTGTCACGGGCGTAAAAGATTTGAACGTCTTGAACAAACGAGTC
TCCGTTCTCGAGAATTCATTTGAAGAGAAAACAGCAGAGAAAGACTATCG
TGCGAAAGTGGTGCGCGCCGAATCATACGATCAAGTTTTAGAGATGGTTC
GGAAAGGAGATGTGTTCGCAGGTATGATGAACGCGGACGTAGCGGCTTGG
TACCAGGATGAAATTAACGATAATACTGCTTTAGTACCTTTGAAAATCGT
CGAAAAACTACCTGCTAACTTATACATCAATTGCTATTTACCTGCTGACT
TGGCAgttcaaatgaaaaagattttcaaatgtATGTATTATGCTAAAGAC
GAAGTGTACACCTATTCTATACAAGCTTTTCAACAATACTGTCACACAGA
CACTTTGTACATAGGTTCAATGAGTGATTTAGTTTTTCACAACATCTACA
TACAAATCCTTTTGGGTGCAGTGGCAGGTTTGATGTTGATTGGTATTGGA
TATGACGTCACCAAATATTGGACATACTTTAAAAGCTCAGGTAGCGAGAA
AGATGAGAAAGAGACTGATCAAttgatgatgaagaaaaagaaagagaaaa
atggTTTCAATGACCGATATCCGATATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044969XLOC_044969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072457-proteinTCONS_00072457-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072457-exon-scaffold_77-1491911889:119372..122511TCONS_00072457-exon-scaffold_77-1491911889:119372..122511Clytia hemisphaericaexon
TCONS_00072457-exon-scaffold_77-1510915933:119372..122511TCONS_00072457-exon-scaffold_77-1510915933:119372..122511Clytia hemisphaericaexon
TCONS_00072457-exon-scaffold_77-1575043694:119372..122511TCONS_00072457-exon-scaffold_77-1575043694:119372..122511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:119372..122511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.024831 0.0763441 0.0413247 0.0713442 1.15896 0.83843 4.10837 4.83689 5.86477 4.36288 3.39124 4.83785 3.06996 2.9655 0.0146292 0.0232193 2.70958 3.59393 3.50994 4.02601 7.83803 7.76961 1.88974 2.74772 3.23541 4.56697 20.63 4.80589 0.0841905 0.071609
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013099K_chnl_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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