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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=transcript|length=3140bp AACACAATATAAAATTGTTATCTTTTTCACagcttatactttttttatca tAGAAGATTATATTTTCcaacttttctttccaaaacTGGCTGAATGGGGA GACACAATTAGCGAATCCAAAGAAAAGAGAATAGTTTTTCTCATCACTGA ATTTATAAACTGTATTTTAAACGATTTGATAAAAAGGTTTTACATTCTAT TCATCCCATCTTCCAAGAGgaattttattagtttttttttatagttCCCC CCTTGGTAGAGATTAAGGAAAGTGATTTCTCCCTCAAATCAAACAGTAGG ATCAATGCTGATAATCTGGACTTGATTGAGATTTCGTTACAGTAAAAAGT ATTCTTTAGTCGCATTCCTCAGATGGTTAATCGACCGCCTTTGAAATCAT GATTAGTTTTTTTGGTTCTTTAAGTTGAAATATTTAGGTTTTGCAATTCC TTATTGGCTTTTGACCAGATTTATGGTCTAACCGGATTGacttattcttg atatgcgtaagtcaagatgatgTCATATTTTCAacggaagcacccgaaaa aagccggattttgacctccgtgtttctatttttagtaacagagaggggtC AAATTCCGGATTTCTTCGGGTAATTCCGCTAGAAAATGagttacgcatat caagaattggtTTTCCATAGCACTACTGAACATAATATTGTTTAACCAAA TgatcgattttttttttgttatgaaaGGGATAActagataaaaaaatgaa attcggCCTAAAAGAAACCTTTTTTATGGTCCTGATTAAAACTGCCAAAT ATCTCTACTTACTAACATTCCAAAGCTGTAAAGATGAAATGGTGTGAAAT CTCTGAATTTCgtagaatttctttttttttttcttgagcaaaaatttgaa attaaaacccAAATATCTTGTTTTTGAAATAGGCAGAAATTCTTAAACCG AATTTCAATTTTATCTGGATATTCCTTTAATTATTATACCTGTACATGTT GCTTGGTTATAAAGGTCTATTTACATCAAATGTTCTCgattaataaaaat tcaaagtcCGTAGTTCAATCACTCTTGagaaaataaagcaaaattgtTAG CTTCAATTTATAATCACTAAATAACATCTGAAGTTATAGGTTTTAAGGAA TAGCGTCTACTAAAGGAAATAATGATGTATTGTAATGCTTTTGCTATCTT CTGCTTCTAATACCGTTTCTAAAAGTGTCAACATCTTGTGTCATCAATCT AATCTGCTCAAAGAGCTTTAGTTCGGAAGCTTTTAAGCAGCTCATGGCAT CCCTCTATCCTACATAGTGGATCACGTCTCGACTTCTTGTGTACCTTCAT CAGAATATCGGATATCGGTCATTGAAAccatttttctctttctttttctt catcatcaaTTGATCAGTCTCTTTCTCATCTTTCTCGCTACCTGAGCTTT TAAAGTATGTCCAATATTTGGTGACGTCATATCCAATACCAATCAACATC AAACCTGCCACTGCACCCAAAAGGATTTGTATGTAGATGTTGTGAAAAAC TAAATCACTCATTGAACCTATGTACAAAGTGTCTGTGTGACAGTATTGTT GAAAAGCTTGTATAGAATAGGTGTACACTTCGTCTTTAGCATAATACATa catttgaaaatctttttcatttgaacTGCCAAGTCAGCAGGTAAATAGCA ATTGATGTATAAGTTAGCAGGTAGTTTTTCGACGATTTTCAAAGGTACTA AAGCAGTATTATCGTTAATTTCATCCTGGTACCAAGCCGCTACGTCCGCG TTCATCATACCTGCGAACACATCTCCTTTCCGAACCATCTCTAAAACTTG ATCGTATGATTCGGCGCGCACCACTTTCGCACGATAGTCTTTCTCTGCTG TTTTCTCTTCAAATGAATTCTCGAGAACGGAGACTCGTTTGTTCAAGACG TTCAAATCTTTTACGCCCGTGACAATATCAGTCATTGTGGCGGTCATTAT ACACCCAACCATCACGCCCACAAATAACCAAATACAGGCAATAAATCGCC CGATCGGATTTTTTGGTGTGATATCTCCGTAGCCTACTGTTGTCATGGAG ACAATAGCCCAATAAAGTCCAGTCCCTAAGCCTTTAATAAAGGAATTTGG AAGTTCTTTACTTTGTTGGCGTTCGATCACCCAAAGCACCAAACCGAACA AAATTGCCATCAAGATAGCTAGGAAGAAAATTTGTTGACAGCTTAAAATA CCCCGGATGATTTTATTCGGGAGAGAGATCATTTCCCGACGAACGATAAC AGCAATCTTGTCTGACTTCATGAGTTGAAAAACACGGAGATTTCGTTTGC TGACGAAATCATCCACTTTCTTGTTGGAGTAGGCGACCACTGGAATCCAA AAAGCGTTATTCTGGCGGATCTCACTCAACTCTCCTTCTTGGTATCCCAC ATCAGAACGcgctaaattgtaaaaatgttttCGGCTGCCGGCTCTTTTGA CGTAAttgatcattttgatggaatgGTTGTTAGGGATACAGTAAGCTTGT GCTTGTTGGAACATCAATGGTATGATTCCATCAATTTCACCCTTGGCATT GTAGAAGATGAAAGGTTTCTGTTCCCAGTATACGACATCCATTAGAACGG TCTCTTTCGTTTTTGTGTTCTCATTATCGTGGTTGGTGGTTGCAGAAGTG TTGCCAGATGTTGTCTCTTGAGTTACGTTTGTTGTTGGAGTCGTTCCAGG TTGTGCTGTAGGGATCGCCCATAGTGTTGCGCAACAACTACAGCCAATCA AAAAGAGGTTAAATGTGAACCAAGCTGTCATTTTCAGTAAATATCCGATG CTTTTGTATATAGACGGGTTGAGTGAAGTCAGCAGAATGAATTTCGAACT CCCATGGTTGTGCTTTTTATGGCAGTCTCGAGAATTATAAATGAGATATA TTTTTATATAGATACCTAGATAAGAAGTGACAGTGAAGCGATattaaaaa ttaattgaaaattgatttagaATCCAGAAAAGGATAAATAGAACAGTCAT TTTAATAGCAAGCCTGAGACGGAAATTAAGGCGAGTTAATGGTGACAGTT TGGACACGGTAAAGATTAATTCAAAGTTGGAGATTTCTCC Run BLAST on NCBI protein sequence of TCONS_00072457-protein >TCONS_00072457-protein ID=TCONS_00072457-protein|Name=TCONS_00072457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MTAWFTFNLFLIGCSCCATLWAIPTAQPGTTPTTNVTQETTSGNTSATTN HDNENTKTKETVLMDVVYWEQKPFIFYNAKGEIDGIIPLMFQQAQAYCIP NNHSIKMINYVKRAGSRKHFYNLARSDVGYQEGELSEIRQNNAFWIPVVA YSNKKVDDFVSKRNLRVFQLMKSDKIAVIVRREMISLPNKIIRGILSCQQ IFFLAILMAILFGLVLWVIERQQSKELPNSFIKGLGTGLYWAIVSMTTVG YGDITPKNPIGRFIACIWLFVGVMVGCIMTATMTDIVTGVKDLNVLNKRV SVLENSFEEKTAEKDYRAKVVRAESYDQVLEMVRKGDVFAGMMNADVAAW YQDEINDNTALVPLKIVEKLPANLYINCYLPADLAVQMKKIFKCMYYAKD EVYTYSIQAFQQYCHTDTLYIGSMSDLVFHNIYIQILLGAVAGLMLIGIG YDVTKYWTYFKSSGSEKDEKETDQLMMKKKKEKNGFNDRYPIF Run BLAST on NCBI transcript from alignment at scaffold_77:119372..122511 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at scaffold_77:119372..122511 (Clytia hemisphaerica) GGAGAAATCTCCAACTTTGAATTAATCTTTACCGTGTCCAAACTGTCACC
ATTAACTCGCCTTAATTTCCGTCTCAGGCTTGCTATTAAAATGACTGTTC
TATTTATCCTTTTCTGGATtctaaatcaattttcaattaatttttaatAT
CGCTTCACTGTCACTTCTTATCTAGGTATCTATATAAAAATATATCTCAT
TTATAATTCTCGAGACTGCCATAAAAAGCACAACCATGGGAGTTCGAAAT
TCATTCTGCTGACTTCACTCAACCCGTCTATATACAAAAGCATCGGATAT
TTACTGAAAATGACAGCTTGGTTCACATTTAACCTCTTTTTGATTGGCTG
TAGTTGTTGCGCAACACTATGGGCGATCCCTACAGCACAACCTGGAACGA
CTCCAACAACAAACGTAACTCAAGAGACAACATCTGGCAACACTTCTGCA
ACCACCAACCACGATAATGAGAACACAAAAACGAAAGAGACCGTTCTAAT
GGATGTCGTATACTGGGAACAGAAACCTTTCATCTTCTACAATGCCAAGG
GTGAAATTGATGGAATCATACCATTGATGTTCCAACAAGCACAAGCTTAC
TGTATCCCTAACAACcattccatcaaaatgatcaaTTACGTCAAAAGAGC
CGGCAGCCGaaaacatttttacaatttagcgCGTTCTGATGTGGGATACC
AAGAAGGAGAGTTGAGTGAGATCCGCCAGAATAACGCTTTTTGGATTCCA
GTGGTCGCCTACTCCAACAAGAAAGTGGATGATTTCGTCAGCAAACGAAA
TCTCCGTGTTTTTCAACTCATGAAGTCAGACAAGATTGCTGTTATCGTTC
GTCGGGAAATGATCTCTCTCCCGAATAAAATCATCCGGGGTATTTTAAGC
TGTCAACAAATTTTCTTCCTAGCTATCTTGATGGCAATTTTGTTCGGTTT
GGTGCTTTGGGTGATCGAACGCCAACAAAGTAAAGAACTTCCAAATTCCT
TTATTAAAGGCTTAGGGACTGGACTTTATTGGGCTATTGTCTCCATGACA
ACAGTAGGCTACGGAGATATCACACCAAAAAATCCGATCGGGCGATTTAT
TGCCTGTATTTGGTTATTTGTGGGCGTGATGGTTGGGTGTATAATGACCG
CCACAATGACTGATATTGTCACGGGCGTAAAAGATTTGAACGTCTTGAAC
AAACGAGTCTCCGTTCTCGAGAATTCATTTGAAGAGAAAACAGCAGAGAA
AGACTATCGTGCGAAAGTGGTGCGCGCCGAATCATACGATCAAGTTTTAG
AGATGGTTCGGAAAGGAGATGTGTTCGCAGGTATGATGAACGCGGACGTA
GCGGCTTGGTACCAGGATGAAATTAACGATAATACTGCTTTAGTACCTTT
GAAAATCGTCGAAAAACTACCTGCTAACTTATACATCAATTGCTATTTAC
CTGCTGACTTGGCAgttcaaatgaaaaagattttcaaatgtATGTATTAT
GCTAAAGACGAAGTGTACACCTATTCTATACAAGCTTTTCAACAATACTG
TCACACAGACACTTTGTACATAGGTTCAATGAGTGATTTAGTTTTTCACA
ACATCTACATACAAATCCTTTTGGGTGCAGTGGCAGGTTTGATGTTGATT
GGTATTGGATATGACGTCACCAAATATTGGACATACTTTAAAAGCTCAGG
TAGCGAGAAAGATGAGAAAGAGACTGATCAAttgatgatgaagaaaaaga
aagagaaaaatggTTTCAATGACCGATATCCGATATTCTGATGAAGGTAC
ACAAGAAGTCGAGACGTGATCCACTATGTAGGATAGAGGGATGCCATGAG
CTGCTTAAAAGCTTCCGAACTAAAGCTCTTTGAGCAGATTAGATTGATGA
CACAAGATGTTGACACTTTTAGAAACGGTATTAGAAGCAGAAGATAGCAA
AAGCATTACAATACATCATTATTTCCTTTAGTAGACGCTATTCCTTAAAA
CCTATAACTTCAGATGTTATTTAGTGATTATAAATTGAAGCTAacaattt
tgctttattttctCAAGAGTGATTGAACTACGgactttgaatttttatta
atcGAGAACATTTGATGTAAATAGACCTTTATAACCAAGCAACATGTACA
GGTATAATAATTAAAGGAATATCCAGATAAAATTGAAATTCGGTTTAAGA
ATTTCTGCCTATTTCAAAAACAAGATATTTgggttttaatttcaaatttt
tgctcaagaaaaaaaaaaagaaattctacGAAATTCAGAGATTTCACACC
ATTTCATCTTTACAGCTTTGGAATGTTAGTAAGTAGAGATATTTGGCAGT
TTTAATCAGGACCATAAAAAAGGTTTCTTTTAGGccgaatttcatttttt
tatctagTTATCCCtttcataacaaaaaaaaaatcgatcATTTGGTTAAA
CAATATTATGTTCAGTAGTGCTATGGAAAaccaattcttgatatgcgtaa
ctCATTTTCTAGCGGAATTACCCGAAGAAATCCGGAATTTGacccctctc
tgttactaaaaatagaaacacggaggtcaaaatccggcttttttcgggtg
cttccgtTGAAAATATGAcatcatcttgacttacgcatatcaagaataag
tCAATCCGGTTAGACCATAAATCTGGTCAAAAGCCAATAAGGAATTGCAA
AACCTAAATATTTCAACTTAAAGAACCAAAAAAACTAATCATGATTTCAA
AGGCGGTCGATTAACCATCTGAGGAATGCGACTAAAGAATACTTTTTACT
GTAACGAAATCTCAATCAAGTCCAGATTATCAGCATTGATCCTACTGTTT
GATTTGAGGGAGAAATCACTTTCCTTAATCTCTACCAAGGGGGGaactat
aaaaaaaaactaataaaattcCTCTTGGAAGATGGGATGAATAGAATGTA
AAACCTTTTTATCAAATCGTTTAAAATACAGTTTATAAATTCAGTGATGA
GAAAAACTATTCTCTTTTCTTTGGATTCGCTAATTGTGTCTCCCCATTCA
GCCAgttttggaaagaaaagttgGAAAATATAATCTTCTatgataaaaaa
agtataagctGTGAAAAAGATAACAATTTTATATTGTGTT Coding sequence (CDS) from alignment at scaffold_77:119372..122511 >TCONS_00072457 ID=TCONS_00072457|Name=TCONS_00072457|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_77:119372..122511 (Clytia hemisphaerica) ATGACAGCTTGGTTCACATTTAACCTCTTTTTGATTGGCTGTAGTTGTTG CGCAACACTATGGGCGATCCCTACAGCACAACCTGGAACGACTCCAACAA CAAACGTAACTCAAGAGACAACATCTGGCAACACTTCTGCAACCACCAAC CACGATAATGAGAACACAAAAACGAAAGAGACCGTTCTAATGGATGTCGT ATACTGGGAACAGAAACCTTTCATCTTCTACAATGCCAAGGGTGAAATTG ATGGAATCATACCATTGATGTTCCAACAAGCACAAGCTTACTGTATCCCT AACAACcattccatcaaaatgatcaaTTACGTCAAAAGAGCCGGCAGCCG aaaacatttttacaatttagcgCGTTCTGATGTGGGATACCAAGAAGGAG AGTTGAGTGAGATCCGCCAGAATAACGCTTTTTGGATTCCAGTGGTCGCC TACTCCAACAAGAAAGTGGATGATTTCGTCAGCAAACGAAATCTCCGTGT TTTTCAACTCATGAAGTCAGACAAGATTGCTGTTATCGTTCGTCGGGAAA TGATCTCTCTCCCGAATAAAATCATCCGGGGTATTTTAAGCTGTCAACAA ATTTTCTTCCTAGCTATCTTGATGGCAATTTTGTTCGGTTTGGTGCTTTG GGTGATCGAACGCCAACAAAGTAAAGAACTTCCAAATTCCTTTATTAAAG GCTTAGGGACTGGACTTTATTGGGCTATTGTCTCCATGACAACAGTAGGC TACGGAGATATCACACCAAAAAATCCGATCGGGCGATTTATTGCCTGTAT TTGGTTATTTGTGGGCGTGATGGTTGGGTGTATAATGACCGCCACAATGA CTGATATTGTCACGGGCGTAAAAGATTTGAACGTCTTGAACAAACGAGTC TCCGTTCTCGAGAATTCATTTGAAGAGAAAACAGCAGAGAAAGACTATCG TGCGAAAGTGGTGCGCGCCGAATCATACGATCAAGTTTTAGAGATGGTTC GGAAAGGAGATGTGTTCGCAGGTATGATGAACGCGGACGTAGCGGCTTGG TACCAGGATGAAATTAACGATAATACTGCTTTAGTACCTTTGAAAATCGT CGAAAAACTACCTGCTAACTTATACATCAATTGCTATTTACCTGCTGACT TGGCAgttcaaatgaaaaagattttcaaatgtATGTATTATGCTAAAGAC GAAGTGTACACCTATTCTATACAAGCTTTTCAACAATACTGTCACACAGA CACTTTGTACATAGGTTCAATGAGTGATTTAGTTTTTCACAACATCTACA TACAAATCCTTTTGGGTGCAGTGGCAGGTTTGATGTTGATTGGTATTGGA TATGACGTCACCAAATATTGGACATACTTTAAAAGCTCAGGTAGCGAGAA AGATGAGAAAGAGACTGATCAAttgatgatgaagaaaaagaaagagaaaa atggTTTCAATGACCGATATCCGATATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072457-exon-scaffold_77-1491911889:119372..122511 | TCONS_00072457-exon-scaffold_77-1491911889:119372..122511 | Clytia hemisphaerica | exon |
TCONS_00072457-exon-scaffold_77-1510915933:119372..122511 | TCONS_00072457-exon-scaffold_77-1510915933:119372..122511 | Clytia hemisphaerica | exon |
TCONS_00072457-exon-scaffold_77-1575043694:119372..122511 | TCONS_00072457-exon-scaffold_77-1575043694:119372..122511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_77 | supercontig | scaffold_77:119372..122511 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013099 | K_chnl_dom |
Blast
The following BLAST results are available for this feature:
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