TCONS_00072456 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072456
Unique NameTCONS_00072456
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072456 ID=TCONS_00072456|Name=TCONS_00072456|organism=Clytia hemisphaerica|type=transcript|length=543bp
NGATGGTTGGGCTTTTTCTTTCTTAGGGACAAGTTCGAGCAGTTTAGTCG
GGACTTCAACGCAATTGatacaaataaatttttgttgtctattttcttca
ATTGTTTGTATTGCAAACGCAGGAAGCAGGCAAGATCGATAGTGAACAGA
TCTTTTGCAGCTCGAACAGATCAGCGAATCCTTATCATTATCAGCGACGC
AGCGATTTTCGGTACAAATAATGATCTCATCCTTTGGTGCGACTTTTTTG
GAAGCAGCTTTTCGTTTGGGTAGTACGGATGGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGTCCTTATCATTATCAGCGACGCAGCGAT
TTTCGGTACAAATAATGATCTCATCCTTTGGTGCGACTTTTTTGGAAGCA
GCTTTTCGTTTGGGTAGTACGGATGGTGGTGCCGATGCCATTTGGATGAG
TTTTGGTCAAATAGATGGATTGTAGAAgttgatttttgtttgaaaaacag
ctttttggttattttttgtCGAGTTTTccactggaaattttca
Run BLAST on NCBI

protein sequence of TCONS_00072456-protein

>TCONS_00072456-protein ID=TCONS_00072456-protein|Name=TCONS_00072456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MASAPPSVLPKRKAASKKVAPKDEIIICTENRCVADNDKDXXXXXXXXXX
XXXPSVLPKRKAASKKVAPKDEIIICTENRCVADNDKDSLICSSCKRSVH
YRSCLLPAFAIQTIEENRQQKFICINCVEVPTKLLELVPKKEKAQPX
Run BLAST on NCBI

transcript from alignment at scaffold_77:88978..89520

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072456 ID=TCONS_00072456|Name=TCONS_00072456|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at scaffold_77:88978..89520 (Clytia hemisphaerica)
tgaaaatttccagtggAAAACTCGacaaaaaataaccaaaaagctgtttt
tcaaacaaaaatcaacTTCTACAATCCATCTATTTGACCAAAACTCATCC
AAATGGCATCGGCACCACCATCCGTACTACCCAAACGAAAAGCTGCTTCC
AAAAAAGTCGCACCAAAGGATGAGATCATTATTTGTACCGAAAATCGCTG
CGTCGCTGATAATGATAAGGACTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNACCATCCGTACTACCCAAACGAAAAGCTGCTTCCAAAAAA
GTCGCACCAAAGGATGAGATCATTATTTGTACCGAAAATCGCTGCGTCGC
TGATAATGATAAGGATTCGCTGATCTGTTCGAGCTGCAAAAGATCTGTTC
ACTATCGATCTTGCCTGCTTCCTGCGTTTGCAATACAAACAATtgaagaa
aatagacaacaaaaatttatttgtatCAATTGCGTTGAAGTCCCGACTAA
ACTGCTCGAACTTGTCCCTAAGAAAGAAAAAGCCCAACCATCN

Coding sequence (CDS) from alignment at scaffold_77:88978..89520

>TCONS_00072456 ID=TCONS_00072456|Name=TCONS_00072456|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_77:88978..89520 (Clytia hemisphaerica)
ATGGCATCGGCACCACCATCCGTACTACCCAAACGAAAAGCTGCTTCCAA
AAAAGTCGCACCAAAGGATGAGATCATTATTTGTACCGAAAATCGCTGCG
TCGCTGATAATGATAAGGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACCATCCGTACTACCCAAACGAAAAGCTGCTTCCAAAAAAGT
CGCACCAAAGGATGAGATCATTATTTGTACCGAAAATCGCTGCGTCGCTG
ATAATGATAAGGATTCGCTGATCTGTTCGAGCTGCAAAAGATCTGTTCAC
TATCGATCTTGCCTGCTTCCTGCGTTTGCAATACAAACAATtgaagaaaa
tagacaacaaaaatttatttgtatCAATTGCGTTGAAGTCCCGACTAAAC
TGCTCGAACTTGTCCCTAAGAAAGAAAAAGCCCAACCATCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044968XLOC_044968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072456-exon-scaffold_77-1491911889:88978..89520TCONS_00072456-exon-scaffold_77-1491911889:88978..89520Clytia hemisphaericaexon
TCONS_00072456-exon-scaffold_77-1510915933:88978..89520TCONS_00072456-exon-scaffold_77-1510915933:88978..89520Clytia hemisphaericaexon
TCONS_00072456-exon-scaffold_77-1575043694:88978..89520TCONS_00072456-exon-scaffold_77-1575043694:88978..89520Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072456-proteinTCONS_00072456-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:88978..89520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237957	0.828656	0.673567	1.44976	1.00271	0.380367	0.546254	0.639246	0.17902	0.620946	0.538079	0	0.565153	0.540637	0.42221	0.32364	0.714533	0.245191	0.45166	0.619418	0.308101	0.751404	0.487163	0.221451	0.570223	1.32317	0	0.466324	0.117897	0.240236
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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