TCONS_00072455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072455
Unique NameTCONS_00072455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072455 ID=TCONS_00072455|Name=TCONS_00072455|organism=Clytia hemisphaerica|type=transcript|length=859bp
AAAGAGTTATCCACTGCTGAAAGGAGAATCGAACAAAATGAAGGTTCGAG
AGATGATTTAAGACAAGAACTTGAGAGCTTGAAGAAGGAAAAGGAactcc
aaaaattgaaaatggaaAACAAACAGCTGAAAGCTGAGGTTGAAAAACTT
AGACAGCTACCAAAAGGTCATTTGGAACAGAGCTTTGAAGTAGAGAACCT
GAGACTTGAAGTCGCCATGTTGAAAGCTGAAAATCGTGTCAAAGATTTGG
AGATGGAGAATGGGAAGTTAATAAAGAGAAAGGAAGGAGACTTTGGAAGA
GATTAAATGTTTGAAAGATGAGAAGAAAACtgttgaagaaaaattgaaaa
ctttggATACGAAGTAAAAACAACTTATTACAGAGAATATTGAGCTGAAT
GAGAAAGCACTTGCAACTCAGAACATGGAAAAAGAGCTAAGACAAGAATT
TGAAACACTGGCAATAAAGCGACGTATGACTGGCCAAACGGTAGTTGGTC
AAATATTGAGTAAATTCATTCATCAAATTAACGGGGACGAGAAAGTACCA
CTTTACAAAAAGTATTACGAGGAATTGTTTAATGAAGTTCGTGAAAAAGC
ATGGTGTACGTACTGTAGGGTTCTCAAAGTACAAAACAGTACAACAAATA
ACAATAAATTGGCTATGAATAGTTTCAATACCAGCGGTGGACAAGAACTT
GACTTCGAGATGGTCAACGTATTGCATCCAATTGATATCACGAAATCTCG
AAACATGAATTATGATTCGTTCTACAGAGAATGGTCGTGTTCGCTATCGG
AAGATTTTAATCAAGATCATGTTTTGGTGTGCCTTTTTGAAAAAGAGTCA
CCTGAAACA
Run BLAST on NCBI

protein sequence of TCONS_00072455-protein

>TCONS_00072455-protein ID=TCONS_00072455-protein|Name=TCONS_00072455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MEKELRQEFETLAIKRRMTGQTVVGQILSKFIHQINGDEKVPLYKKYYEE
LFNEVREKAWCTYCRVLKVQNSTTNNNKLAMNSFNTSGGQELDFEMVNVL
HPIDITKSRNMNYDSFYREWSCSLSEDFNQDHVLVCLFEKESPET
Run BLAST on NCBI

transcript from alignment at scaffold_77:24680..25538

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072455 ID=TCONS_00072455|Name=TCONS_00072455|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at scaffold_77:24680..25538 (Clytia hemisphaerica)
TGTTTCAGGTGACTCTTTTTCAAAAAGGCACACCAAAACATGATCTTGAT
TAAAATCTTCCGATAGCGAACACGACCATTCTCTGTAGAACGAATCATAA
TTCATGTTTCGAGATTTCGTGATATCAATTGGATGCAATACGTTGACCAT
CTCGAAGTCAAGTTCTTGTCCACCGCTGGTATTGAAACTATTCATAGCCA
ATTTATTGTTATTTGTTGTACTGTTTTGTACTTTGAGAACCCTACAGTAC
GTACACCATGCTTTTTCACGAACTTCATTAAACAATTCCTCGTAATACTT
TTTGTAAAGTGGTACTTTCTCGTCCCCGTTAATTTGATGAATGAATTTAC
TCAATATTTGACCAACTACCGTTTGGCCAGTCATACGTCGCTTTATTGCC
AGTGTTTCAAATTCTTGTCTTAGCTCTTTTTCCATGTTCTGAGTTGCAAG
TGCTTTCTCATTCAGCTCAATATTCTCTGTAATAAGTTGTTTTTACTTCG
TATccaaagttttcaatttttcttcaacaGTTTTCTTCTCATCTTTCAAA
CATTTAATCTCTTCCAAAGTCTCCTTCCTTTCTCTTTATTAACTTCCCAT
TCTCCATCTCCAAATCTTTGACACGATTTTCAGCTTTCAACATGGCGACT
TCAAGTCTCAGGTTCTCTACTTCAAAGCTCTGTTCCAAATGACCTTTTGG
TAGCTGTCTAAGTTTTTCAACCTCAGCTTTCAGCTGTTTGTTttccattt
tcaatttttggagtTCCTTTTCCTTCTTCAAGCTCTCAAGTTCTTGTCTT
AAATCATCTCTCGAACCTTCATTTTGTTCGATTCTCCTTTCAGCAGTGGA
TAACTCTTT

Coding sequence (CDS) from alignment at scaffold_77:24680..25538

>TCONS_00072455 ID=TCONS_00072455|Name=TCONS_00072455|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_77:24680..25538 (Clytia hemisphaerica)
TGTTTCAGGTGACTCTTTTTCAAAAAGGCACACCAAAACATGATCTTGAT
TAAAATCTTCCGATAGCGAACACGACCATTCTCTGTAGAACGAATCATAA
TTCATGTTTCGAGATTTCGTGATATCAATTGGATGCAATACGTTGACCAT
CTCGAAGTCAAGTTCTTGTCCACCGCTGGTATTGAAACTATTCATAGCCA
ATTTATTGTTATTTGTTGTACTGTTTTGTACTTTGAGAACCCTACAGTAC
GTACACCATGCTTTTTCACGAACTTCATTAAACAATTCCTCGTAATACTT
TTTGTAAAGTGGTACTTTCTCGTCCCCGTTAATTTGATGAATGAATTTAC
TCAATATTTGACCAACTACCGTTTGGCCAGTCATACGTCGCTTTATTGCC
AGTGTTTCAAATTCTTGTCTTAGCTCTTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044967XLOC_044967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072455-exon-scaffold_77-1491911889:24680..25538TCONS_00072455-exon-scaffold_77-1491911889:24680..25538Clytia hemisphaericaexon
TCONS_00072455-exon-scaffold_77-1510915933:24680..25538TCONS_00072455-exon-scaffold_77-1510915933:24680..25538Clytia hemisphaericaexon
TCONS_00072455-exon-scaffold_77-1575043694:24680..25538TCONS_00072455-exon-scaffold_77-1575043694:24680..25538Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072455-proteinTCONS_00072455-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:24680..25538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545811	0.372576	0.926993	0.423229	0.147211	0.0581642	2.80691	4.20447	1.42583	1.25337	0.663576	1.59943	1.52461	0.753962	0.030993	0.365862	0.163895	0.125991	0	0.0607148	0.0527721	0	0	0	0.293007	0.261502	0	0.079873	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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