|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072446 ID=TCONS_00072446|Name=TCONS_00072446|organism=Clytia hemisphaerica|type=transcript|length=1642bpRun BLAST on NCBI transcript from alignment at scaffold_77:449875..460895- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072446 ID=TCONS_00072446|Name=TCONS_00072446|organism=Clytia hemisphaerica|type=transcript|length=11021bp|location=Sequence derived from alignment at scaffold_77:449875..460895- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072446 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.308e-17 Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 3
Query: 1008 LKEFNWKVLVSTGNDDDAGTSSNVSIMLFGSKGQSEYKVLGLPDRKSGMTFQRGKTKVFDIKTQNIGKLKKIRVMHDQSGKEPDWKLRKLTLENKNSQAKNTKFILPCNRWLSEKEGDHSTVREI----PVDHKKTPVSLYRIHVETGDMENETIDPKLFVDLH---GTEGEXIEYTSR 1523
LK+F W + V T + AGT+S + I ++G KG+++ ++L P+ K F+ G + F I+ ++G+ KIRV HD+ W L ++TL N ++ K+ CNRWL E D+ VRE+ P + ++ Y + V TG++E D +++ L G GE + Y R
Sbjct: 144 LKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTD-EILLNPNNKW---FKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNK---DKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCR 315 HSP 2 Score: 81.6481 bits (200), Expect = 5.842e-16 Identity = 51/166 (30.72%), Postives = 88/166 (53.01%), Query Frame = 3
Query: 1023 WKVLVSTGNDDDAGTSSNVSIMLFGSKGQSEYKVLGLPDRKSGMTFQRGKTKVFDIKTQNIGKLKKIRVMHDQSGKEPDWKL-RKLTLENKNSQAKNTKFILPCNRWLSEKEGDHSTVRE-IPVDHKKTPVSL-YRIHVETGDMENETIDPKLFVDLHGTEGEXIE 1511
+ V V TG + AGT +NV + LFG G + ++L R + F++G F I++ + ++++R+ HD G W L R L E ++ N +F PC RWL + + D VRE +P D T + Y I ++TGD+ + D ++++ L+G + + I+
Sbjct: 277 YHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLL-YNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEF--PCLRWLDKDKDDGQLVRELLPSDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIK 439 The following BLAST results are available for this feature:
BLAST of TCONS_00072446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.