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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072444 ID=TCONS_00072444|Name=TCONS_00072444|organism=Clytia hemisphaerica|type=transcript|length=632bp
CAAACAAGAAGGATTCTCCAGGGAACAATTCTCATGAGAAGATTCCCCAT
TACAAAGAAAACGAACCCGagaaaaagaacgaaaaaaaagaaaatgaaga
actaAAACATGAAaccaatttaaaagaaaaagatacaGAATCGGGAAAAA
ATTCTGACGAATCggggaaaaagaaaaatccCGATAAAGACAACCAAGGA
CCAGAAAAGCCTAAAAAGGAATCGAACGATAAAATTAACGAAAAAGATTC
AGCCAATCAAAAAGCATCTGAGCAAGAATCAGCCAATCAAAAACCACCTG
TGCAAGAATCAGCCAATCACAAACCATCTATGCAAGAATCAGCCAATCAA
AAACCATCTATGCAAGAATCAGCCAATCACAAACCATCTGAGCAAGAATC
AGCCAATCAAAAACCACCTGTGCAAGAATCAGCCAATCACAAACCATCTA
TGCAAGAATCAGCCAATCAAAAACCATCTATGCAAGAATCAGCCAATCAC
AAACCATCTGAGCCCATCAATCAAGATAAAACAAACACTGTACATATTGT
ACATATCCAACGATGAAATTACTGAAATGCTTCTCAGAAAATAAATCTCA
CCTATTTGATTGTAATGGTAACAGCCCCCGGG Run BLAST on NCBI protein sequence of TCONS_00072444-protein >TCONS_00072444-protein ID=TCONS_00072444-protein|Name=TCONS_00072444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
NKKDSPGNNSHEKIPHYKENEPEKKNEKKENEELKHETNLKEKDTESGKN
SDESGKKKNPDKDNQGPEKPKKESNDKINEKDSANQKASEQESANQKPPV
QESANHKPSMQESANQKPSMQESANHKPSEQESANQKPPVQESANHKPSM
QESANQKPSMQESANHKPSEPINQDKTNTVHIVHIQR Run BLAST on NCBI transcript from alignment at scaffold_77:445752..446623- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072444 ID=TCONS_00072444|Name=TCONS_00072444|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at scaffold_77:445752..446623- (Clytia hemisphaerica)
CAAACAAGAAGGATTCTCCAGGGAACAATTCTCATGAGAAGATTCCCCAT
TACAAAGAAAACGAACCCGAGAAAAAGAACGAAAAAAAAGAAAATGAAGA
ACTAAAACATGAAACCAATTTAAAAGAAAAAGATACAGAATCGGGAAAAA
ATTCTGACGAATCGGGGAAAAAGAAAAATCCCGATAAAGACAACCAAGGA
CCAGAAAAGCCTAAAAAGGAATCGAACGATAAAATTAACGAAAAAGATTC
AGCCAATCAAAAAGCATCTGAGGCGGAATCGATCGATCAAAAACCATCTG
TGCAAGAATCAGCCAATCACAAACAATCTGAGGTGGAATCAGCCAATCAC
AAACCATCTGTGCAAGAATCAGCCAATCAAAAACCACCTGTGCAAGAATC
AGCCAATCACAAACAATCTGAGGTGGAATCAGCCAATCACAAACCATCTG
TGCAAGAATCAGCCAATCAAAAACCATCTGAGCGAGAATCAGCCAATCAC
AAACCATCTGAGCAAGAATCAGCCAATCAAAAACCACCTGTGCAAGAATC
AGCCAATCACAAACCATCTATGCAAGAATCAGCCAATCAAAAACCATCTA
TGCAAGAATCAGCCAATCACAAACCATCTGAGCAAGAATCAGCCAATCAA
AAACCACCTGTGCAAGAATCAGCCAATCACAAACCATCTATGCAAGAATC
AGCCAATCAAAAACCATCTATGCAAGAATCAGCCAATCACAAACCATCTG
AGCCCATCAATCAAGATAAAACAAACACTGTACATATTGTACATATCCAA
CGATGAAATTACTGAAATGCTTCTCAGAAAATAAATCTCACCTATTTGAT
TGTAATGGTAACAGCCCCCGGG Coding sequence (CDS) from alignment at scaffold_77:445752..446623- >TCONS_00072444 ID=TCONS_00072444|Name=TCONS_00072444|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_77:445752..446623- (Clytia hemisphaerica)
CAAGAATCAGCCAATCAAAAACCACCTGTGCAAGAATCAGCCAATCACAA
ACCATCTATGCAAGAATCAGCCAATCAAAAACCATCTATGCAAGAATCAG
CCAATCACAAACCATCTGAGCAAGAATCAGCCAATCAAAAACCACCTGTG
CAAGAATCAGCCAATCACAAACCATCTATGCAAGAATCAGCCAATCAAAA
ACCATCTATGCAAGAATCAGCCAATCACAAACCATCTGAGCCCATCAATC
AAGATAAAACAAACACTGTACATATTGTACATATCCAACGATGAAACAAG
AAGGATTCTCCAGGGAACAATTCTCATGAGAAGATTCCCCATTACAAAGA
AAACGAACCCGAGAAAAAGAACGAAAAAAAAGAAAATGAAGAACTAAAAC
ATGAAACCAATTTAAAAGAAAAAGATACAGAATCGGGAAAAAATTCTGAC
GAATCGGGGAAAAAGAAAAATCCCGATAAAGACAACCAAGGACCAGAAAA
GCCTAAAAAGGAATCGAACGATAAAATTAACGAAAAAGATTCAGCCAATC
AAAAAGCATCTGAGCAAGAATCAGCCAATCAAAAACCACCTGTGCAAGAA
TCAGCCAATCACAAACCATCTATGCAAGAATCAGCCAATCAAAAACCATC
TATGCAAGAATCAGCCAATCACAAACCATCTGAGCAAGAATCAGCCAATC
AAAAACCACCTGTGCAAGAATCAGCCAATCACAAACCATCTATGCAAGAA
TCAGCCAATCAAAAACCATCTATGCAAGAATCAGCCAATCACAAACCATC
TGAGCCCATCAATCAAGATAAAACAAACACTGTACATATTGTACATATCC
AACGATGAAACAAGAAGGATTCTCCAGGGAACAATTCTCATGAGAAGATT
CCCCATTACAAAGAAAACGAACCCGAGAAAAAGAACGAAAAAAAAGAAAA
TGAAGAACTAAAACATGAAACCAATTTAAAAGAAAAAGATACAGAATCGG
GAAAAAATTCTGACGAATCGGGGAAAAAGAAAAATCCCGATAAAGACAAC
CAAGGACCAGAAAAGCCTAAAAAGGAATCGAACGATAAAATTAACGAAAA
AGATTCAGCCAATCAAAAAGCATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072444-exon-scaffold_77-1575043694:446352..446623 | TCONS_00072444-exon-scaffold_77-1575043694:446352..446623 | Clytia hemisphaerica | exon |
| TCONS_00072444-exon-scaffold_77-1575043694:445752..446111 | TCONS_00072444-exon-scaffold_77-1575043694:445752..446111 | Clytia hemisphaerica | exon |
| TCONS_00072444-exon-scaffold_77-1510915933:446352..446623 | TCONS_00072444-exon-scaffold_77-1510915933:446352..446623 | Clytia hemisphaerica | exon |
| TCONS_00072444-exon-scaffold_77-1510915933:445752..446111 | TCONS_00072444-exon-scaffold_77-1510915933:445752..446111 | Clytia hemisphaerica | exon |
| TCONS_00072444-exon-scaffold_77-1491911889:446352..446623 | TCONS_00072444-exon-scaffold_77-1491911889:446352..446623 | Clytia hemisphaerica | exon |
| TCONS_00072444-exon-scaffold_77-1491911889:445752..446111 | TCONS_00072444-exon-scaffold_77-1491911889:445752..446111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:445752..446623 - |
Blast
The following BLAST results are available for this feature:
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