TCONS_00072441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072441
Unique NameTCONS_00072441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072441 ID=TCONS_00072441|Name=TCONS_00072441|organism=Clytia hemisphaerica|type=transcript|length=1943bp
GAATTTTCTCTATTTCTCTCTCTTTCAACGGTCTCTGAGAATCTGTCTTG
TAGTCAAGGGTTCTTTTACAGGGCAGAAAGAGCTTGTTGACTGGATTTTC
AtacttttcattttatgtttgatTCTGTTTTCAAGTTTTGTTTTAGGTTA
TGGATCTTGTAACtatatctcttgattgaagtTATGTGATTTCTTTATGT
AAGGTGTAAACAAAGGAGAAAAACTCTGCAGTCGAAAGTAGTGTAAATAA
AGTGTGAAGAACAATGCAAAATGAAGATGAGTATCTAATGGCGAGCTCAC
GTCATGACCATTGTTACCAAGGCTCAACTTGCTTCTTTCAGTAAACATCG
TGTTGTTATGAAAAACGTTCGGTCGTGAGTGTCAGGAGGTTGGCTCCTAT
TTACTATCATACAAAAGAGGTGTCAAACATTGAAATTCTTCAACACGCGC
TTTCCATAATTAACTATCATTAGATGCTCATTACTTTGAACGAGGGTCAT
AATAATTATCATCAACCACCTTTTGAGTTGTTATCTTGAAACATATGTCG
TGATTTGTTCttctgctgtttttttttgcgtttttgatGACAATGGTATT
TTCTGGGGAGATGGATTTTATCAGCACATGTCACATCACAAAACTCAGCC
CATGGCCGATGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACG
TCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAA
AACTGTCGAATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATT
GTACAGACCAATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGT
ATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGA
CCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCG
GTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACC
GTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATA
CCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAACTGAaaccgaaat
tccgtaaaataTGTAATTTATTATCAAACTTAATGTATCATTCGGACTTA
GGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGA
GACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGG
CTAAGGAAATGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAAT
AACGAAGGAAATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAAT
CAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCG
CTGATAAGACGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCC
ATTCAAAAAGGTTACAATAACGTCATCGATGAACTGGTCAAGATAGTGAA
CCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTCGTCTACATCTCATC
ACGATTCACGCTCCCTCATGACCATGGTCGATATGCGAAGAGGTAGCCCG
GTCTCCAACTCCATGATCAATCTCAATCGCTCGGCATACGGTTACACGGA
ACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTCACCGCGCTCTGAAC
GTGAACGCGAATCACCGCCAATGGCCCACTCGAAGTATGAAGACTCAGCG
AGGAACGGATTTCTCATTAAACAAGAGGACGAAAACGAAGTAGATAGCAG
TTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACA
TCGATGTCAACTCACCACTACTGTCACACTTGGCGGAGGCTGGTCTTTTG
AGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGCACGCGATG
Run BLAST on NCBI

transcript from alignment at scaffold_77:349270..354478-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072441 ID=TCONS_00072441|Name=TCONS_00072441|organism=Clytia hemisphaerica|type=transcript|length=5209bp|location=Sequence derived from alignment at scaffold_77:349270..354478- (Clytia hemisphaerica)
GAATTTTCTCTATTTCTCTCTCTTTCAACGGTCTCTGAGAATCTGTCTTG
TAGTCAAGGGTTCTTTTACAGGGCAGAAAGAGCTTGTTGACTGGATTTTC
ATACTTTTCATTTTATGTTTGATTCTGTTTTCAAGTTTTGTTTTAGGTTA
TGGATCTTGTAACTATATCTCTTGATTGAAGTTATGTGATTTCTTTATGT
AAGGTGTAAACAAAGGAGAAAAACTCTGCAGTCGAAAGTAGTGTAAATAA
AGTGTGAAGAACAATGCAAAATGAAGATGAGTATCTAATGGCGAGCTCAC
GTCATGACCATTGTTACCAAGGCTCAACTTGCTTCTTTCAGTAAACATCG
TGTTGTTATGAAAAACGTTCGGTCGTGAGTGTCAGGAGGTTGGCTCCTAT
TTACTATCATACAAAAGAGGTGTCAAACATTGAAATTCTTCAACACGCGC
TTTCCATAATTAACTATCATTAGATGCTCATTACTTTGAACGAGGGTCAT
AATAATTATCATCAACCACCTTTTGAGTTGTTATCTTGAAACATATGTCG
TGATTTGTTCTTCTGCTGTTTTTTTTTGCGTTTTTGATGACAATGGTATT
TTCTGGGGAGATGGATTTTATCAGCACATGTCACATCACAAAACTCAGCC
CATGGGTTAGTATCATTTTTCAATTCTTGAAAGGAAAATAATTTTGCGTG
TAACACAGGGGGTTTGAAGATGTATAACCAGAAAGCTGTGTTTTCTCACG
GTCCTTCTGATTATGAATCAGACCGAAGGTAGTAGAAGGCAGCTGTACAC
CTTTTCGGGAGGATGGTTGGTCGGCCATTCGGTATGTTTTTTGTTTGGTT
AGAGCGTAGAGGTGGTTCGTGGTTGAATGTTCGTTATGCAGATTGTGAGT
GAACCTTTTCTTCTTCTCAATGCTTGTACATGTGTTAGAAATAAAAGTTC
AGGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGAAGTT
TGTGATTGAATGTTCTTCGTTGATTTTGTGAAAAATATGAGACGCTTTCA
AGGAGGTCATTTTCATCAGGTATTCATCTTCTTTCAAGTCATCTTATATT
TCACCCATAGTTATTGAACAATTAGTTTTATGTAAAGCATTGTATATAGT
ATAGTTAAGGTTTACACAATTAAAAAGTATTTGACCCTTATGTCCGCCTT
CGACACGGAATTGATGTCATCTTATTTGATTACCTTTTTCCTTTTTAACT
GAATATTTTGCGGTCGTCAATATTAAGTTAACGAGTTTACATGTTATCCG
GAGTAGTTGAATGTCCAGTCGCCCACTTGAAAAATGTTTTGGTTACTTTA
AGGGTGCGGAAATCCTTTGCTTCCGATGTCCGAGTGACGTGTACATGAAG
TCTTAATTATATCAGCTTTCCATTAAATGGTAATGACCCTCACCTTAACC
GGATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCGTATTATTATTAGACGT
AACCTTACTGAAAGGGGCTGTTTATGGTTTGTAATGAGACTTGTACTATC
AGTATTGGGTTATTCCTCTTCATGTTGCTATGAGGATATTTTCTCAATTT
TTGAGATACTGTTTGAGGATCATCTTTGGTATTTGTTAATTGAACGAAAT
TGAAAACATTTTTTATCTATCATATGGTTATGTGGTCATTTGATTTATGA
AAATAGGCGGGGCTAGGAGAGTTTTGCAAACGGACATATAACTATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAGGGGGGATCAGACCCCTTTCCGCACTATGGGTAGGTTGTGATAAG
AGAGATTTGATGTGAACTAATTTGACCCAATTCTCTTTTCGTTTCAGCCG
ATGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATC
TAACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCG
AATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGAC
CAATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAA
ATATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTG
CTTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGT
AATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGAT
AGGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATA
AATCAAGGCCTAAATTTACAACGAAAGAACTGAAACCGAAATTCCGTAAA
ATATGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGG
AACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGC
TAGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAA
ATGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGG
AAATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTG
ATCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAG
ACGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAA
AGGTTACAATAACGTCATCGATGAACTGGTCAAGGTATTGTTTGATAACT
TTGAAATTTACTTTATCTGACATGTTCAACTCTTCGAATTGGCCGAATCC
TGGACATAAATTGGTAACCTGAAACAATTAAAGTACTCCCCCTTATTGCA
TTATGGAATATACCTAAAAGAATTCTCCAATCTTTTCTAAAAATTATTAA
GTCCAAAATTTTACGTTGACTTTTACTATGTTCTGATTTTCTTTTCTGTT
TTTCAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTC
GTCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGATATGC
GAAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTCGGCA
TACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTC
ACCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCGAAGT
ATGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGAAAAC
GAAGTAGGTTTCCTTAATTTTAAAGGCAGAAACCTTAGCGATTTTTTAGT
TTTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAAAATTCTTTTTTCGTTT
GATTTCGCATTATAACACTGAACAGTGCGAAAAAAGTTACAAATGGATAA
ACGATAAAATGTCAAAACTATTGTCCATGAATGATAAATAGCATTATTGG
GAAAAGGTTGGGACCCTTGTTTACATGATCTGGAAATAGTGGTACAGTGG
CATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCAGTTTGCAACCGAC
GAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGGTGAGT
AAAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGTTTATAAGATAACT
AAAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCTGGTTAGGTCCCTT
GATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACCATGAACAGTCATC
AGTCATCATTAAATTGTATCTTTTACATTAGATTGAAAGTTACGTTTTTC
TGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTGCCATAACCTTGATAAT
TAAATTTTACCCTTTTTTTCAGTCAACTCACCACTACTGTCACACTTGGC
GGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAG
CACGCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044961XLOC_044961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072441-exon-scaffold_77-1575043694:353824..354478TCONS_00072441-exon-scaffold_77-1575043694:353824..354478Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1575043694:350495..351331TCONS_00072441-exon-scaffold_77-1575043694:350495..351331Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1575043694:349972..350272TCONS_00072441-exon-scaffold_77-1575043694:349972..350272Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1575043694:349635..349697TCONS_00072441-exon-scaffold_77-1575043694:349635..349697Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1575043694:349270..349356TCONS_00072441-exon-scaffold_77-1575043694:349270..349356Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1510915933:353824..354478TCONS_00072441-exon-scaffold_77-1510915933:353824..354478Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1510915933:350495..351331TCONS_00072441-exon-scaffold_77-1510915933:350495..351331Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1510915933:349972..350272TCONS_00072441-exon-scaffold_77-1510915933:349972..350272Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1510915933:349635..349697TCONS_00072441-exon-scaffold_77-1510915933:349635..349697Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1510915933:349270..349356TCONS_00072441-exon-scaffold_77-1510915933:349270..349356Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1491911889:353824..354478TCONS_00072441-exon-scaffold_77-1491911889:353824..354478Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1491911889:350495..351331TCONS_00072441-exon-scaffold_77-1491911889:350495..351331Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1491911889:349972..350272TCONS_00072441-exon-scaffold_77-1491911889:349972..350272Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1491911889:349635..349697TCONS_00072441-exon-scaffold_77-1491911889:349635..349697Clytia hemisphaericaexon
TCONS_00072441-exon-scaffold_77-1491911889:349270..349356TCONS_00072441-exon-scaffold_77-1491911889:349270..349356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:349270..354478 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0718236	0.306641	0.0153204	0	0	0	0	0	0	0	0	0	0.176611	0.144403	0	0	0	0	0	0.331604	0.0185525	0.0245345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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