TCONS_00072440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072440
Unique NameTCONS_00072440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072440 ID=TCONS_00072440|Name=TCONS_00072440|organism=Clytia hemisphaerica|type=transcript|length=1386bp
ACACCTTTTCGGGAGGATGGTTGGTCGGCCATTCGGTATGTTTTTTGTTT
GGTTAGAGCGTAGAGGTGGTTCGTGGTTGAATGTTCGTTATGCAGATTCC
GATGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAAT
CTAACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTC
GAATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGA
CCAATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGA
AATATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTT
GCTTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATG
TAATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGA
TAGGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTAT
AAATCAAGGCCTAAATTTACAACGAAAGAACTGAaaccgaaattccgtaa
aataTGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATG
GAACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGG
CTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGA
AATGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAG
GAAATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTT
GATCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAA
GACGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAA
AAGGTTACAATAACGTCATCGATGAACTGGTCAAGATAGTGAACCCATCA
ACGTCCTTGGTCAAAGAATCGCCTTCTTCGTCTACATCTCATCACGATTC
ACGCTCCCTCATGACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCA
ACTCCATGATCAATCTCAATCGCTCGGCATACGGTTACACGGAACGCAGG
CGTTCACGCAGTCGTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACG
CGAATCACCGCCAATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACG
GATTTCTCATTAAACAAGAGGACGAAAACGAAGTAGATAGCAGTTTGCAA
CCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGT
CAACTCACCACTACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAG
TTTCTGATCTCCTGTCACGAGCCAAAGCACGCGATG
Run BLAST on NCBI

transcript from alignment at scaffold_77:349270..353682-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072440 ID=TCONS_00072440|Name=TCONS_00072440|organism=Clytia hemisphaerica|type=transcript|length=4413bp|location=Sequence derived from alignment at scaffold_77:349270..353682- (Clytia hemisphaerica)
ACACCTTTTCGGGAGGATGGTTGGTCGGCCATTCGGTATGTTTTTTGTTT
GGTTAGAGCGTAGAGGTGGTTCGTGGTTGAATGTTCGTTATGCAGATTGT
GAGTGAACCTTTTCTTCTTCTCAATGCTTGTACATGTGTTAGAAATAAAA
GTTCAGGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGA
AGTTTGTGATTGAATGTTCTTCGTTGATTTTGTGAAAAATATGAGACGCT
TTCAAGGAGGTCATTTTCATCAGGTATTCATCTTCTTTCAAGTCATCTTA
TATTTCACCCATAGTTATTGAACAATTAGTTTTATGTAAAGCATTGTATA
TAGTATAGTTAAGGTTTACACAATTAAAAAGTATTTGACCCTTATGTCCG
CCTTCGACACGGAATTGATGTCATCTTATTTGATTACCTTTTTCCTTTTT
AACTGAATATTTTGCGGTCGTCAATATTAAGTTAACGAGTTTACATGTTA
TCCGGAGTAGTTGAATGTCCAGTCGCCCACTTGAAAAATGTTTTGGTTAC
TTTAAGGGTGCGGAAATCCTTTGCTTCCGATGTCCGAGTGACGTGTACAT
GAAGTCTTAATTATATCAGCTTTCCATTAAATGGTAATGACCCTCACCTT
AACCGGATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCGTATTATTATTAG
ACGTAACCTTACTGAAAGGGGCTGTTTATGGTTTGTAATGAGACTTGTAC
TATCAGTATTGGGTTATTCCTCTTCATGTTGCTATGAGGATATTTTCTCA
ATTTTTGAGATACTGTTTGAGGATCATCTTTGGTATTTGTTAATTGAACG
AAATTGAAAACATTTTTTATCTATCATATGGTTATGTGGTCATTTGATTT
ATGAAAATAGGCGGGGCTAGGAGAGTTTTGCAAACGGACATATAACTATG
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAGGGGGGATCAGACCCCTTTCCGCACTATGGGTAGGTTGTGA
TAAGAGAGATTTGATGTGAACTAATTTGACCCAATTCTCTTTTCGTTTCA
GCCGATGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAG
AATCTAACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACT
GTCGAATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTAC
AGACCAATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAG
AGAAATATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCT
GTTGCTTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAA
ATGTAATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTA
CGATAGGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTT
TATAAATCAAGGCCTAAATTTACAACGAAAGAACTGAAACCGAAATTCCG
TAAAATATGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGA
ATGGAACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACC
AGGCTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAA
GGAAATGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACG
AAGGAAATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAA
GTTGATCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGA
TAAGACGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTC
AAAAAGGTTACAATAACGTCATCGATGAACTGGTCAAGGTATTGTTTGAT
AACTTTGAAATTTACTTTATCTGACATGTTCAACTCTTCGAATTGGCCGA
ATCCTGGACATAAATTGGTAACCTGAAACAATTAAAGTACTCCCCCTTAT
TGCATTATGGAATATACCTAAAAGAATTCTCCAATCTTTTCTAAAAATTA
TTAAGTCCAAAATTTTACGTTGACTTTTACTATGTTCTGATTTTCTTTTC
TGTTTTTCAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTT
CTTCGTCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGAT
ATGCGAAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTC
GGCATACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTC
GGTCACCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCG
AAGTATGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGA
AAACGAAGTAGGTTTCCTTAATTTTAAAGGCAGAAACCTTAGCGATTTTT
TAGTTTTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAAAATTCTTTTTTC
GTTTGATTTCGCATTATAACACTGAACAGTGCGAAAAAAGTTACAAATGG
ATAAACGATAAAATGTCAAAACTATTGTCCATGAATGATAAATAGCATTA
TTGGGAAAAGGTTGGGACCCTTGTTTACATGATCTGGAAATAGTGGTACA
GTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCAGTTTGCAAC
CGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGGT
GAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGTTTATAAGAT
AACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCTGGTTAGGTC
CCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACCATGAACAGT
CATCAGTCATCATTAAATTGTATCTTTTACATTAGATTGAAAGTTACGTT
TTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTGCCATAACCTTGA
TAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCACTACTGTCACACT
TGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCC
AAAGCACGCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044961XLOC_044961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072440-exon-scaffold_77-1575043694:353585..353682TCONS_00072440-exon-scaffold_77-1575043694:353585..353682Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1575043694:350495..351331TCONS_00072440-exon-scaffold_77-1575043694:350495..351331Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1575043694:349972..350272TCONS_00072440-exon-scaffold_77-1575043694:349972..350272Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1575043694:349635..349697TCONS_00072440-exon-scaffold_77-1575043694:349635..349697Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1575043694:349270..349356TCONS_00072440-exon-scaffold_77-1575043694:349270..349356Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1510915933:353585..353682TCONS_00072440-exon-scaffold_77-1510915933:353585..353682Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1510915933:350495..351331TCONS_00072440-exon-scaffold_77-1510915933:350495..351331Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1510915933:349972..350272TCONS_00072440-exon-scaffold_77-1510915933:349972..350272Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1510915933:349635..349697TCONS_00072440-exon-scaffold_77-1510915933:349635..349697Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1510915933:349270..349356TCONS_00072440-exon-scaffold_77-1510915933:349270..349356Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1491911889:353585..353682TCONS_00072440-exon-scaffold_77-1491911889:353585..353682Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1491911889:350495..351331TCONS_00072440-exon-scaffold_77-1491911889:350495..351331Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1491911889:349972..350272TCONS_00072440-exon-scaffold_77-1491911889:349972..350272Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1491911889:349635..349697TCONS_00072440-exon-scaffold_77-1491911889:349635..349697Clytia hemisphaericaexon
TCONS_00072440-exon-scaffold_77-1491911889:349270..349356TCONS_00072440-exon-scaffold_77-1491911889:349270..349356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:349270..353682 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325716	0.000780354	6.10823	0	18.8319	24.2383	9.61314	5.68532	0	0.0216088	0	0	0	0	0	5.50579e-10	0	0	0	0	0.472291	0.49565	0	4.90421e-09	10.3427	0.942259	0.000347974	1.21522e-08	0.00548232	0.00768778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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