TCONS_00072439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072439
Unique NameTCONS_00072439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072439 ID=TCONS_00072439|Name=TCONS_00072439|organism=Clytia hemisphaerica|type=transcript|length=1406bp
GGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGAAGTTT
GTGATTGAATGTTCTTCgttgattttgtgaaaaatatgaGACGCTTTCAA
GGAGGTCATTTTCATCAGCCGATGAAAGAAATGACGCTGCCAACGATGCA
TAATTTGAACACGTCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGC
CTTTCTGTGATAAAACTGTCGAATGTCCTGAACATCATGAACTCTTACAA
GCAATTGTAAATTGTACAGACCAATTAGGTCACTTATCGAACTTAGATGG
CTTGAAAGCCTGTATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATG
ATACCATCCCAGACCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGG
GCAGCTTCTCTCGGTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGG
ATTCGATTCCACCGTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACA
GAACTATATTATACCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAA
CTGAaaccgaaattccgtaaaataTGTAATTTATTATCAAACTTAATGTA
TCATTCGGACTTAGGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGT
TATGTAGCTCAGAGACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTT
ATGGCCGCTCAGGCTAAGGAAATGAACGATTCGGATAGAATGGCGACTTT
AGACGCTAAAAATAACGAAGGAAATACTTGTTTGCATATACTTGCTGGTG
CTAATGAGAAAATCAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTA
CTTCAATCGGGCGCTGATAAGACGATGAGAAATGCAAAGGATCAAACACC
CTTGGATATTGCCATTCAAAAAGGTTACAATAACGTCATCGATGAACTGG
TCAAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTCG
TCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGATATGCG
AAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTCGGCAT
ACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTCA
CCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCGAAGTA
TGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGAAAACG
AAGTAGATAGCAGTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCT
TCTATGTCCAACATCGATGTCAACTCACCACTACTGTCACACTTGGCGGA
GGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGCAC
GCGATG
Run BLAST on NCBI

transcript from alignment at scaffold_77:349270..353527-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072439 ID=TCONS_00072439|Name=TCONS_00072439|organism=Clytia hemisphaerica|type=transcript|length=4258bp|location=Sequence derived from alignment at scaffold_77:349270..353527- (Clytia hemisphaerica)
GGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGAAGTTT
GTGATTGAATGTTCTTCGTTGATTTTGTGAAAAATATGAGACGCTTTCAA
GGAGGTCATTTTCATCAGGTATTCATCTTCTTTCAAGTCATCTTATATTT
CACCCATAGTTATTGAACAATTAGTTTTATGTAAAGCATTGTATATAGTA
TAGTTAAGGTTTACACAATTAAAAAGTATTTGACCCTTATGTCCGCCTTC
GACACGGAATTGATGTCATCTTATTTGATTACCTTTTTCCTTTTTAACTG
AATATTTTGCGGTCGTCAATATTAAGTTAACGAGTTTACATGTTATCCGG
AGTAGTTGAATGTCCAGTCGCCCACTTGAAAAATGTTTTGGTTACTTTAA
GGGTGCGGAAATCCTTTGCTTCCGATGTCCGAGTGACGTGTACATGAAGT
CTTAATTATATCAGCTTTCCATTAAATGGTAATGACCCTCACCTTAACCG
GATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCGTATTATTATTAGACGTA
ACCTTACTGAAAGGGGCTGTTTATGGTTTGTAATGAGACTTGTACTATCA
GTATTGGGTTATTCCTCTTCATGTTGCTATGAGGATATTTTCTCAATTTT
TGAGATACTGTTTGAGGATCATCTTTGGTATTTGTTAATTGAACGAAATT
GAAAACATTTTTTATCTATCATATGGTTATGTGGTCATTTGATTTATGAA
AATAGGCGGGGCTAGGAGAGTTTTGCAAACGGACATATAACTATGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAGGGGGGATCAGACCCCTTTCCGCACTATGGGTAGGTTGTGATAAGA
GAGATTTGATGTGAACTAATTTGACCCAATTCTCTTTTCGTTTCAGCCGA
TGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATCT
AACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCGA
ATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGACC
AATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAAA
TATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTGC
TTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGTA
ATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGATA
GGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATAA
ATCAAGGCCTAAATTTACAACGAAAGAACTGAAACCGAAATTCCGTAAAA
TATGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGGA
ACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGCT
AGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAAA
TGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGGA
AATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTGA
TCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAGA
CGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAAA
GGTTACAATAACGTCATCGATGAACTGGTCAAGGTATTGTTTGATAACTT
TGAAATTTACTTTATCTGACATGTTCAACTCTTCGAATTGGCCGAATCCT
GGACATAAATTGGTAACCTGAAACAATTAAAGTACTCCCCCTTATTGCAT
TATGGAATATACCTAAAAGAATTCTCCAATCTTTTCTAAAAATTATTAAG
TCCAAAATTTTACGTTGACTTTTACTATGTTCTGATTTTCTTTTCTGTTT
TTCAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTCG
TCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGATATGCG
AAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTCGGCAT
ACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTCA
CCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCGAAGTA
TGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGAAAACG
AAGTAGGTTTCCTTAATTTTAAAGGCAGAAACCTTAGCGATTTTTTAGTT
TTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAAAATTCTTTTTTCGTTTG
ATTTCGCATTATAACACTGAACAGTGCGAAAAAAGTTACAAATGGATAAA
CGATAAAATGTCAAAACTATTGTCCATGAATGATAAATAGCATTATTGGG
AAAAGGTTGGGACCCTTGTTTACATGATCTGGAAATAGTGGTACAGTGGC
ATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCAGTTTGCAACCGACG
AGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGGTGAGTA
AAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGTTTATAAGATAACTA
AAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCTGGTTAGGTCCCTTG
ATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACCATGAACAGTCATCA
GTCATCATTAAATTGTATCTTTTACATTAGATTGAAAGTTACGTTTTTCT
GCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTGCCATAACCTTGATAATT
AAATTTTACCCTTTTTTTCAGTCAACTCACCACTACTGTCACACTTGGCG
GAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGC
ACGCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044961XLOC_044961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072439-exon-scaffold_77-1575043694:353410..353527TCONS_00072439-exon-scaffold_77-1575043694:353410..353527Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1575043694:350495..351331TCONS_00072439-exon-scaffold_77-1575043694:350495..351331Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1575043694:349972..350272TCONS_00072439-exon-scaffold_77-1575043694:349972..350272Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1575043694:349635..349697TCONS_00072439-exon-scaffold_77-1575043694:349635..349697Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1575043694:349270..349356TCONS_00072439-exon-scaffold_77-1575043694:349270..349356Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1510915933:353410..353527TCONS_00072439-exon-scaffold_77-1510915933:353410..353527Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1510915933:350495..351331TCONS_00072439-exon-scaffold_77-1510915933:350495..351331Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1510915933:349972..350272TCONS_00072439-exon-scaffold_77-1510915933:349972..350272Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1510915933:349635..349697TCONS_00072439-exon-scaffold_77-1510915933:349635..349697Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1510915933:349270..349356TCONS_00072439-exon-scaffold_77-1510915933:349270..349356Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1491911889:353410..353527TCONS_00072439-exon-scaffold_77-1491911889:353410..353527Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1491911889:350495..351331TCONS_00072439-exon-scaffold_77-1491911889:350495..351331Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1491911889:349972..350272TCONS_00072439-exon-scaffold_77-1491911889:349972..350272Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1491911889:349635..349697TCONS_00072439-exon-scaffold_77-1491911889:349635..349697Clytia hemisphaericaexon
TCONS_00072439-exon-scaffold_77-1491911889:349270..349356TCONS_00072439-exon-scaffold_77-1491911889:349270..349356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:349270..353527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000217594	1.05236	0	0.949904	2.40924	1.67227	1.06318	0.839813	0.387938	4.36835	0.312275	0.0880816	0.343693	1.09342	0.0259587	4.91823	3.90886	1.80551	0	0	0.257483	0.0160831	0.287784	0.616448	0.288811	1.7151	0.193175	1.18483e-09	0.797483	0.212906
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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