TCONS_00072438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072438
Unique NameTCONS_00072438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072438 ID=TCONS_00072438|Name=TCONS_00072438|organism=Clytia hemisphaerica|type=transcript|length=1331bp
ACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGCCGATGA
AAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATCTAAC
ATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCGAATG
TCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGACCAAT
TAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAAATAT
CAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTGCTTC
GAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGTAATG
CTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGATAGGA
AGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATAAATC
AAGGCCTAAATTTACAACGAAAGAACTGAaaccgaaattccgtaaaataT
GTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGGAACT
CCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGCTAGT
TTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAAATGA
ACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGGAAAT
ACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTGATCA
CGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAGACGA
TGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAAAGGT
TACAATAACGTCATCGATGAACTGGTCAAGATAGTGAACCCATCAACGTC
CTTGGTCAAAGAATCGCCTTCTTCGTCTACATCTCATCACGATTCACGCT
CCCTCATGACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACTCC
ATGATCAATCTCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGTTC
ACGCAGTCGTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGAAT
CACCGCCAATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGATTT
CTCATTAAACAAGAGGACGAAAACGAAGTAGATAGCAGTTTGCAACCGAC
GAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGTCAACT
CACCACTACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCT
GATCTCCTGTCACGAGCCAAAGCACGCGATG
Run BLAST on NCBI

transcript from alignment at scaffold_77:349270..353092-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072438 ID=TCONS_00072438|Name=TCONS_00072438|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_77:349270..353092- (Clytia hemisphaerica)
ACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGGTAATGA
CCCTCACCTTAACCGGATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCGTA
TTATTATTAGACGTAACCTTACTGAAAGGGGCTGTTTATGGTTTGTAATG
AGACTTGTACTATCAGTATTGGGTTATTCCTCTTCATGTTGCTATGAGGA
TATTTTCTCAATTTTTGAGATACTGTTTGAGGATCATCTTTGGTATTTGT
TAATTGAACGAAATTGAAAACATTTTTTATCTATCATATGGTTATGTGGT
CATTTGATTTATGAAAATAGGCGGGGCTAGGAGAGTTTTGCAAACGGACA
TATAACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAGGGGGGATCAGACCCCTTTCCGCACTATGGG
TAGGTTGTGATAAGAGAGATTTGATGTGAACTAATTTGACCCAATTCTCT
TTTCGTTTCAGCCGATGAAAGAAATGACGCTGCCAACGATGCATAATTTG
AACACGTCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGCCTTTCTG
TGATAAAACTGTCGAATGTCCTGAACATCATGAACTCTTACAAGCAATTG
TAAATTGTACAGACCAATTAGGTCACTTATCGAACTTAGATGGCTTGAAA
GCCTGTATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATGATACCAT
CCCAGACCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGGGCAGCTT
CTCTCGGTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGGATTCGAT
TCCACCGTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACAGAACTAT
ATTATACCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAACTGAAAC
CGAAATTCCGTAAAATATGTAATTTATTATCAAACTTAATGTATCATTCG
GACTTAGGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAG
CTCAGAGACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCG
CTCAGGCTAAGGAAATGAACGATTCGGATAGAATGGCGACTTTAGACGCT
AAAAATAACGAAGGAAATACTTGTTTGCATATACTTGCTGGTGCTAATGA
GAAAATCAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTACTTCAAT
CGGGCGCTGATAAGACGATGAGAAATGCAAAGGATCAAACACCCTTGGAT
ATTGCCATTCAAAAAGGTTACAATAACGTCATCGATGAACTGGTCAAGGT
ATTGTTTGATAACTTTGAAATTTACTTTATCTGACATGTTCAACTCTTCG
AATTGGCCGAATCCTGGACATAAATTGGTAACCTGAAACAATTAAAGTAC
TCCCCCTTATTGCATTATGGAATATACCTAAAAGAATTCTCCAATCTTTT
CTAAAAATTATTAAGTCCAAAATTTTACGTTGACTTTTACTATGTTCTGA
TTTTCTTTTCTGTTTTTCAGATAGTGAACCCATCAACGTCCTTGGTCAAA
GAATCGCCTTCTTCGTCTACATCTCATCACGATTCACGCTCCCTCATGAC
CATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACTCCATGATCAATC
TCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGTTCACGCAGTCGT
TCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGAATCACCGCCAAT
GGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGATTTCTCATTAAAC
AAGAGGACGAAAACGAAGTAGGTTTCCTTAATTTTAAAGGCAGAAACCTT
AGCGATTTTTTAGTTTTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAAAA
TTCTTTTTTCGTTTGATTTCGCATTATAACACTGAACAGTGCGAAAAAAG
TTACAAATGGATAAACGATAAAATGTCAAAACTATTGTCCATGAATGATA
AATAGCATTATTGGGAAAAGGTTGGGACCCTTGTTTACATGATCTGGAAA
TAGTGGTACAGTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGC
AGTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAA
CATCGATGGTGAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCG
TTTATAAGATAACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCC
TGGTTAGGTCCCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGAC
CATGAACAGTCATCAGTCATCATTAAATTGTATCTTTTACATTAGATTGA
AAGTTACGTTTTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTGCC
ATAACCTTGATAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCACTA
CTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCT
GTCACGAGCCAAAGCACGCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044961XLOC_044961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072438-exon-scaffold_77-1575043694:353050..353092TCONS_00072438-exon-scaffold_77-1575043694:353050..353092Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1575043694:350495..351331TCONS_00072438-exon-scaffold_77-1575043694:350495..351331Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1575043694:349972..350272TCONS_00072438-exon-scaffold_77-1575043694:349972..350272Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1575043694:349635..349697TCONS_00072438-exon-scaffold_77-1575043694:349635..349697Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1575043694:349270..349356TCONS_00072438-exon-scaffold_77-1575043694:349270..349356Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1510915933:353050..353092TCONS_00072438-exon-scaffold_77-1510915933:353050..353092Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1510915933:350495..351331TCONS_00072438-exon-scaffold_77-1510915933:350495..351331Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1510915933:349972..350272TCONS_00072438-exon-scaffold_77-1510915933:349972..350272Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1510915933:349635..349697TCONS_00072438-exon-scaffold_77-1510915933:349635..349697Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1510915933:349270..349356TCONS_00072438-exon-scaffold_77-1510915933:349270..349356Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1491911889:353050..353092TCONS_00072438-exon-scaffold_77-1491911889:353050..353092Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1491911889:350495..351331TCONS_00072438-exon-scaffold_77-1491911889:350495..351331Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1491911889:349972..350272TCONS_00072438-exon-scaffold_77-1491911889:349972..350272Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1491911889:349635..349697TCONS_00072438-exon-scaffold_77-1491911889:349635..349697Clytia hemisphaericaexon
TCONS_00072438-exon-scaffold_77-1491911889:349270..349356TCONS_00072438-exon-scaffold_77-1491911889:349270..349356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:349270..353092 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28473	2.7314	0.912645	4.89745	16.4144	5.49394	0.328478	1.01943	6.12911	3.56298	3.71383	3.88798	5.73008	4.03014	3.38836	4.18024	6.19081	8.00675	2.80951	3.09159	2.29332	5.0605	9.15472	11.0551	0.0238581	5.76256	3.8905	9.60634e-07	8.23126	7.51749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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