TCONS_00072428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072428
Unique NameTCONS_00072428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072428 ID=TCONS_00072428|Name=TCONS_00072428|organism=Clytia hemisphaerica|type=transcript|length=2228bp
TGACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGCCGAT
GAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATCTA
ACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCGAA
TGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGACCA
ATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAAAT
ATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTGCT
TCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGTAA
TGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGATAG
GAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATAAA
TCAAGGCCTAAATTTACAACGAAAGAACTGAaaccgaaattccgtaaaat
aTGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGGAA
CTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGCTA
GTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAAAT
GAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGGAA
ATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTGAT
CACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAGAC
GATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAAAG
GTTACAATAACGTCATCGATGAACTGGTCAAGATAGTGAACCCATCAACG
TCCTTGGTCAAAGAATCGCCTTCTTCGTCTACATCTCATCACGATTCACG
CTCCCTCATGACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACT
CCATGATCAATCTCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGT
TCACGCAGTCGTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGA
ATCACCGCCAATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGAT
TTCTCATTAAACAAGAGGACGAAAACGAAGTAGATAGCAGTTTGCAACCG
ACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGTCAA
CTCACCACTACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTT
CTGATCTCCTGTCACGAGCCAAAGCACGCGATGAAAGCCAGTTGAAACGT
TACCAACAACAAGCTAAAGACCTTGATACACAAATCATgtacaaacaaaa
agaaattgaacGTATAAAATCCGAAGTAGAAACTTTGCGTAAGAAACGCA
ATCGTTGCGATGACGAGACGGCGAAACTTAAGAAAAAACTCGCTTCTTGC
TCGAACGCGATTCGCGAACTTCCTTACGGACAAAACTCGAACACGGGGGA
AGCGCAATCAGTTGCTCACTCCCCTGCTACGTAAATCTCTTTTatagttt
tacaaatttttagtttttatagaGGCGTCTTCATAGTGTAAAACTTATTT
TCCTTGTAACTTGTACAttttctttttgcattttttacaaacttatcggc
cctttttacactttttattcCTTGTAAAAAGGAACGCGTGACCTTTCTGA
TACTTCACTTCATATTTGTAGTCTTGATTATCGCGCAGAACCGGTCTAAC
AGAAAATGACGTTGTTCAagtactctcaggtgcctaataaatgCCCCCCC
TCCccgctttttaatttttatccaTTTCGTCTTTTTTAAAAGAGGAACAC
CTTATTTTGTTCTGATTAGCCAGGTTTTATTCTATAATTACCTCTTGCAG
GtatttaaaggtataatttccAACCCCTcgataaaaattttccaacctaT
GAAGAACTTTCCGCGCGATGACGAGGCTTTCATATTCGAGCATTACTTGA
TTGTCGCTTTATTTCAAAGAATACTTTTTCTTTATGTGATCTTGTGCGAT
GTATttctttttgaacttttggcGCCTGAGAAATTAAAGATTAACAGAGt
cagaatatttttatttcgagatAGTATTGTACATAGCTGATGaatataat
atttcttttcatttttaaagatattttt
Run BLAST on NCBI

transcript from alignment at scaffold_77:346178..353094-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072428 ID=TCONS_00072428|Name=TCONS_00072428|organism=Clytia hemisphaerica|type=transcript|length=6917bp|location=Sequence derived from alignment at scaffold_77:346178..353094- (Clytia hemisphaerica)
TGACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGGTAAT GACCCTCACCTTAACCGGATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCG TATTATTATTAGACGTAACCTTACTGAAAGGGGCTGTTTATGGTTTGTAA TGAGACTTGTACTATCAGTATTGGGTTATTCCTCTTCATGTTGCTATGAG GATATTTTCTCAATTTTTGAGATACTGTTTGAGGATCATCTTTGGTATTT GTTAATTGAACGAAATTGAAAACATTTTTTATCTATCATATGGTTATGTG GTCATTTGATTTATGAAAATAGGCGGGGCTAGGAGAGTTTTGCAAACGGA CATATAACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNAAGGGGGGATCAGACCCCTTTCCGCACTATG GGTAGGTTGTGATAAGAGAGATTTGATGTGAACTAATTTGACCCAATTCT CTTTTCGTTTCAGCCGATGAAAGAAATGACGCTGCCAACGATGCATAATT TGAACACGTCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGCCTTTC TGTGATAAAACTGTCGAATGTCCTGAACATCATGAACTCTTACAAGCAAT TGTAAATTGTACAGACCAATTAGGTCACTTATCGAACTTAGATGGCTTGA AAGCCTGTATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATGATACC ATCCCAGACCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGGGCAGC TTCTCTCGGTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGGATTCG ATTCCACCGTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACAGAACT ATATTATACCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAACTGAA ACCGAAATTCCGTAAAATATGTAATTTATTATCAAACTTAATGTATCATT CGGACTTAGGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGTTATGT AGCTCAGAGACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGC CGCTCAGGCTAAGGAAATGAACGATTCGGATAGAATGGCGACTTTAGACG CTAAAAATAACGAAGGAAATACTTGTTTGCATATACTTGCTGGTGCTAAT GAGAAAATCAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTACTTCA ATCGGGCGCTGATAAGACGATGAGAAATGCAAAGGATCAAACACCCTTGG ATATTGCCATTCAAAAAGGTTACAATAACGTCATCGATGAACTGGTCAAG GTATTGTTTGATAACTTTGAAATTTACTTTATCTGACATGTTCAACTCTT CGAATTGGCCGAATCCTGGACATAAATTGGTAACCTGAAACAATTAAAGT ACTCCCCCTTATTGCATTATGGAATATACCTAAAAGAATTCTCCAATCTT TTCTAAAAATTATTAAGTCCAAAATTTTACGTTGACTTTTACTATGTTCT GATTTTCTTTTCTGTTTTTCAGATAGTGAACCCATCAACGTCCTTGGTCA AAGAATCGCCTTCTTCGTCTACATCTCATCACGATTCACGCTCCCTCATG ACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACTCCATGATCAA TCTCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGTTCACGCAGTC GTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGAATCACCGCCA ATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGATTTCTCATTAA ACAAGAGGACGAAAACGAAGTAGGTTTCCTTAATTTTAAAGGCAGAAACC TTAGCGATTTTTTAGTTTTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAA AATTCTTTTTTCGTTTGATTTCGCATTATAACACTGAACAGTGCGAAAAA AGTTACAAATGGATAAACGATAAAATGTCAAAACTATTGTCCATGAATGA TAAATAGCATTATTGGGAAAAGGTTGGGACCCTTGTTTACATGATCTGGA AATAGTGGTACAGTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATA GCAGTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCC AACATCGATGGTGAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTAC CGTTTATAAGATAACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATG CCTGGTTAGGTCCCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTG ACCATGAACAGTCATCAGTCATCATTAAATTGTATCTTTTACATTAGATT GAAAGTTACGTTTTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTG CCATAACCTTGATAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCAC TACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTC CTGTCACGAGCCAAAGCACGCGATGNGGCCGAAAATGCCGGAAATATGCC GGAAAAACTGGTTTTTTGGCATTTTCTCGAGATTTCATCATTAGTTTTTT CTGATTTTTTGCTCAAATATGCGTATTAACAATGCCCAAAACATGGCCGA GTCCGATTTTTAAGAAAAATTTTTTTCCGGCGGAAAATGCCTGAAATATG CCGGAAATCGCCGTTTTTGCAGATTTTCATCGGACTTTTTCCTTATAATT GGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATGTCCACCATCAAG CATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAGCTATTTAAA AATCGCCGGAACAACCTANNNNNNNNNNGACAGTATTTCTTGAATTTCTC GAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAATATG ACAATACCTAAAATGTGACAGAGCCCGATTTTAGAAAAACATTTTTTTCT GGCCGAAAATGCCGGAAATATGCCGGAAAAGCCGGTTTTTTACATTTTCT CGAATTTTCATCAAAAGTTTTTTCTGATTTTTTGCAGAAAAATGCGTATT CCCAATGCTTAAAACATGGCTGAGTTTTTTTGATTTTTGAAAAAAATTTT TTTTTGGTTGAAAATGCCGGAAATCGCCGTTTTTGCAGATTTTCATTAGA TTTTTTTCTTGTATTTCACTCAAAAACATTATTGATAACAACATCAAGCA TGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTATTTA TTTTTCCCCTACAACCCTTCCCTCTCCCCCATCAACAATCAATGATGAAT TTATTGCGTTATGCATTTTCGCTAAACGATATACTTTTTGACTGATTTTT TTCTCCTCGCATTTCTATCCAACTTTCATCATCAGGTAGGTCCATTCAGC ATCTAGCTTGTTTCGTTTGATTTCGCATTACAGTGGAACCTCTAATTAGC GGACACCATCGGGGAAAGGGGTTAGTGTCCGCTAATTAGAAGTGTCCGCC TTTTAGAAACTTTTGATCTCGGAGCTCCAATTTTGAAATTAAGCCATCCC AGGGTGTCGAAAATACAAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNAAGTACTTATCTGCAGACACTAGGCCCTAGAAGAACAAGAGAA AGGTTATTAAAACGCAACAATTTAGTTTTTAACAAATAAAAGAAAATCAG TGATTTACGATTTCTTTGGCCCACCTAAATTCGTTGAATGGGTCAAGAGA AAACTGGAAATTTATAGAAATAATTTGAATGATAAGACTAATAAGTGCTC GAAATAAAAATATCTAAAATTTTTTTTTTCGATTTTGGACGTTTGTGACC AGTTTGATATTCAATGTCCGCTAATTGGAGAGCTAAATAGGGGTTTTGGT CATTTCGTGCGAAAAAATTTGTCCGCTAATCAGAGGGTCCGCTAATTGAG TGTCCGCCTTTTAGAAACTTTTTTATGAGGATTTGACTAGGAAACGGCCG AGGAAAATATAATTGTCCGCTAATCAGAGGTGTCCTTCTTTTAGAGTGTC CGTTAATTAGAGATTTTACTGTATAACACTGATATGAACAATGCGAAAAA AGTTACAAATGGATAAACGATTGGGACCCTTGTTTACATGATCTGGAAAT AGTGGTACAGTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCA GTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAAC ATCGATGGTGAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGT TTATAAGATAACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCT GGTTAGGTCCCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACC ATGAACAGTCATCAGTCATCATTAAATTGTATCTTTTACATTAGATTGAA AGTTACGTTTTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTTCCA TAACCTTGATAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCACTAC TGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTG TCACGAGCCAAAGCACGCGATGAAAGCCAGTTGAAACGTTACCAACAACA AGCTAAAGACCTTGATACACAAATCATGTACAAACAAAAAGAAATTGAAC GTATAAAATCCGAAGTAGAAACTTTGCGTAAGAAACGCAATCGTTGCGAT GACGAGACGGCGAAACTTAAGAAAAAACTCGCTTCTTGCTCGAACGCGAT TCGCGAACTTCCTTACGGACAAAACTCGAACACGGGGGAAGCGCAATCAG TTGCTCACTCCCCTGCTACGTAAATCTCTTTTATAGTTTTACAAATTTTT AGTTTTTATAGAGGCGTCTTCATAGTGTAAAACTTATTTTCCTTGTAACT TGTACATTTTCTTTTTGCATTTTTTACAAACTTATCGGCCCTTTTTACAC TTTTTATTCCTTGTAAAAAGGAACGCGTGACCTTTCTGATACTTCACTTC ATATTTGTAGTCTTGATTATCGCGCAGAACCGGTCTAACAGAAAATGACG TTGTTCAAGTACTCTCAGGTGCCTAATAAATGCCCCCCCTCCCCGCTTTT TAATTTTTATCCATTTCGTCTTTTTTAAAAGAGGAACACCTTATTTTGTT CTGATTAGCCAGGTTTTATTCTATAATTACCTCTTGCAGGTATTTAAAGG TATAATTTCCAACCCCTCGATAAAAATTTTCCAACCTATGAAGAACTTTC CGCGCGATGACGAGGCTTTCATATTCGAGCATTACTTGATTGTCGCTTTA TTTCAAAGAATACTTTTTCTTTATGTGATCTTGTGCGATGTATTTCTTTT TGAACTTTTGGCGCCTGAGAAATTAAAGATTAACAGAGTCAGAATATTTT TATTTCGAGATAGTATTGTACATAGCTGATGAATATAATATTTCTTTTCA TTTTTAAAGATATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044961XLOC_044961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072428-exon-scaffold_77-1575043694:353050..353094TCONS_00072428-exon-scaffold_77-1575043694:353050..353094Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1575043694:350495..351331TCONS_00072428-exon-scaffold_77-1575043694:350495..351331Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1575043694:349972..350272TCONS_00072428-exon-scaffold_77-1575043694:349972..350272Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1575043694:347438..347500TCONS_00072428-exon-scaffold_77-1575043694:347438..347500Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1575043694:346178..347159TCONS_00072428-exon-scaffold_77-1575043694:346178..347159Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1510915933:353050..353094TCONS_00072428-exon-scaffold_77-1510915933:353050..353094Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1510915933:350495..351331TCONS_00072428-exon-scaffold_77-1510915933:350495..351331Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1510915933:349972..350272TCONS_00072428-exon-scaffold_77-1510915933:349972..350272Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1510915933:347438..347500TCONS_00072428-exon-scaffold_77-1510915933:347438..347500Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1510915933:346178..347159TCONS_00072428-exon-scaffold_77-1510915933:346178..347159Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1491911889:353050..353094TCONS_00072428-exon-scaffold_77-1491911889:353050..353094Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1491911889:350495..351331TCONS_00072428-exon-scaffold_77-1491911889:350495..351331Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1491911889:349972..350272TCONS_00072428-exon-scaffold_77-1491911889:349972..350272Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1491911889:347438..347500TCONS_00072428-exon-scaffold_77-1491911889:347438..347500Clytia hemisphaericaexon
TCONS_00072428-exon-scaffold_77-1491911889:346178..347159TCONS_00072428-exon-scaffold_77-1491911889:346178..347159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:346178..353094 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32714 0.993162 8.88455 6.23318 13.1817 12.5548 4.19522 6.01928 3.19285 8.02995 5.22239 5.17707 4.2121 1.9505 5.56324 7.0279 2.61893 6.81385 1.62383 1.99563 1.31932 4.76753 9.5333 6.99117 6.37751 3.2298 2.35791 3.12285 4.63436 7.08094
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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