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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072428 ID=TCONS_00072428|Name=TCONS_00072428|organism=Clytia hemisphaerica|type=transcript|length=2228bp TGACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGCCGAT GAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATCTA ACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCGAA TGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGACCA ATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAAAT ATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTGCT TCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGTAA TGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGATAG GAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATAAA TCAAGGCCTAAATTTACAACGAAAGAACTGAaaccgaaattccgtaaaat aTGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGGAA CTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGCTA GTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAAAT GAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGGAA ATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTGAT CACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAGAC GATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAAAG GTTACAATAACGTCATCGATGAACTGGTCAAGATAGTGAACCCATCAACG TCCTTGGTCAAAGAATCGCCTTCTTCGTCTACATCTCATCACGATTCACG CTCCCTCATGACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACT CCATGATCAATCTCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGT TCACGCAGTCGTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGA ATCACCGCCAATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGAT TTCTCATTAAACAAGAGGACGAAAACGAAGTAGATAGCAGTTTGCAACCG ACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGTCAA CTCACCACTACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTT CTGATCTCCTGTCACGAGCCAAAGCACGCGATGAAAGCCAGTTGAAACGT TACCAACAACAAGCTAAAGACCTTGATACACAAATCATgtacaaacaaaa agaaattgaacGTATAAAATCCGAAGTAGAAACTTTGCGTAAGAAACGCA ATCGTTGCGATGACGAGACGGCGAAACTTAAGAAAAAACTCGCTTCTTGC TCGAACGCGATTCGCGAACTTCCTTACGGACAAAACTCGAACACGGGGGA AGCGCAATCAGTTGCTCACTCCCCTGCTACGTAAATCTCTTTTatagttt tacaaatttttagtttttatagaGGCGTCTTCATAGTGTAAAACTTATTT TCCTTGTAACTTGTACAttttctttttgcattttttacaaacttatcggc cctttttacactttttattcCTTGTAAAAAGGAACGCGTGACCTTTCTGA TACTTCACTTCATATTTGTAGTCTTGATTATCGCGCAGAACCGGTCTAAC AGAAAATGACGTTGTTCAagtactctcaggtgcctaataaatgCCCCCCC TCCccgctttttaatttttatccaTTTCGTCTTTTTTAAAAGAGGAACAC CTTATTTTGTTCTGATTAGCCAGGTTTTATTCTATAATTACCTCTTGCAG GtatttaaaggtataatttccAACCCCTcgataaaaattttccaacctaT GAAGAACTTTCCGCGCGATGACGAGGCTTTCATATTCGAGCATTACTTGA TTGTCGCTTTATTTCAAAGAATACTTTTTCTTTATGTGATCTTGTGCGAT GTATttctttttgaacttttggcGCCTGAGAAATTAAAGATTAACAGAGt cagaatatttttatttcgagatAGTATTGTACATAGCTGATGaatataat atttcttttcatttttaaagatattttt Run BLAST on NCBI transcript from alignment at scaffold_77:346178..353094- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072428 ID=TCONS_00072428|Name=TCONS_00072428|organism=Clytia hemisphaerica|type=transcript|length=6917bp|location=Sequence derived from alignment at scaffold_77:346178..353094- (Clytia hemisphaerica) TGACGTGTACATGAAGTCTTAATTATATCAGCTTTCCATTAAATGGTAAT
GACCCTCACCTTAACCGGATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCG
TATTATTATTAGACGTAACCTTACTGAAAGGGGCTGTTTATGGTTTGTAA
TGAGACTTGTACTATCAGTATTGGGTTATTCCTCTTCATGTTGCTATGAG
GATATTTTCTCAATTTTTGAGATACTGTTTGAGGATCATCTTTGGTATTT
GTTAATTGAACGAAATTGAAAACATTTTTTATCTATCATATGGTTATGTG
GTCATTTGATTTATGAAAATAGGCGGGGCTAGGAGAGTTTTGCAAACGGA
CATATAACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAGGGGGGATCAGACCCCTTTCCGCACTATG
GGTAGGTTGTGATAAGAGAGATTTGATGTGAACTAATTTGACCCAATTCT
CTTTTCGTTTCAGCCGATGAAAGAAATGACGCTGCCAACGATGCATAATT
TGAACACGTCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGCCTTTC
TGTGATAAAACTGTCGAATGTCCTGAACATCATGAACTCTTACAAGCAAT
TGTAAATTGTACAGACCAATTAGGTCACTTATCGAACTTAGATGGCTTGA
AAGCCTGTATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATGATACC
ATCCCAGACCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGGGCAGC
TTCTCTCGGTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGGATTCG
ATTCCACCGTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACAGAACT
ATATTATACCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAACTGAA
ACCGAAATTCCGTAAAATATGTAATTTATTATCAAACTTAATGTATCATT
CGGACTTAGGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGTTATGT
AGCTCAGAGACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTTATGGC
CGCTCAGGCTAAGGAAATGAACGATTCGGATAGAATGGCGACTTTAGACG
CTAAAAATAACGAAGGAAATACTTGTTTGCATATACTTGCTGGTGCTAAT
GAGAAAATCAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTACTTCA
ATCGGGCGCTGATAAGACGATGAGAAATGCAAAGGATCAAACACCCTTGG
ATATTGCCATTCAAAAAGGTTACAATAACGTCATCGATGAACTGGTCAAG
GTATTGTTTGATAACTTTGAAATTTACTTTATCTGACATGTTCAACTCTT
CGAATTGGCCGAATCCTGGACATAAATTGGTAACCTGAAACAATTAAAGT
ACTCCCCCTTATTGCATTATGGAATATACCTAAAAGAATTCTCCAATCTT
TTCTAAAAATTATTAAGTCCAAAATTTTACGTTGACTTTTACTATGTTCT
GATTTTCTTTTCTGTTTTTCAGATAGTGAACCCATCAACGTCCTTGGTCA
AAGAATCGCCTTCTTCGTCTACATCTCATCACGATTCACGCTCCCTCATG
ACCATGGTCGATATGCGAAGAGGTAGCCCGGTCTCCAACTCCATGATCAA
TCTCAATCGCTCGGCATACGGTTACACGGAACGCAGGCGTTCACGCAGTC
GTTCGCCCATTCGGTCACCGCGCTCTGAACGTGAACGCGAATCACCGCCA
ATGGCCCACTCGAAGTATGAAGACTCAGCGAGGAACGGATTTCTCATTAA
ACAAGAGGACGAAAACGAAGTAGGTTTCCTTAATTTTAAAGGCAGAAACC
TTAGCGATTTTTTAGTTTTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAA
AATTCTTTTTTCGTTTGATTTCGCATTATAACACTGAACAGTGCGAAAAA
AGTTACAAATGGATAAACGATAAAATGTCAAAACTATTGTCCATGAATGA
TAAATAGCATTATTGGGAAAAGGTTGGGACCCTTGTTTACATGATCTGGA
AATAGTGGTACAGTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATA
GCAGTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCC
AACATCGATGGTGAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTAC
CGTTTATAAGATAACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATG
CCTGGTTAGGTCCCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTG
ACCATGAACAGTCATCAGTCATCATTAAATTGTATCTTTTACATTAGATT
GAAAGTTACGTTTTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTG
CCATAACCTTGATAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCAC
TACTGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTC
CTGTCACGAGCCAAAGCACGCGATGNGGCCGAAAATGCCGGAAATATGCC
GGAAAAACTGGTTTTTTGGCATTTTCTCGAGATTTCATCATTAGTTTTTT
CTGATTTTTTGCTCAAATATGCGTATTAACAATGCCCAAAACATGGCCGA
GTCCGATTTTTAAGAAAAATTTTTTTCCGGCGGAAAATGCCTGAAATATG
CCGGAAATCGCCGTTTTTGCAGATTTTCATCGGACTTTTTCCTTATAATT
GGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATGTCCACCATCAAG
CATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAGCTATTTAAA
AATCGCCGGAACAACCTANNNNNNNNNNGACAGTATTTCTTGAATTTCTC
GAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAATATG
ACAATACCTAAAATGTGACAGAGCCCGATTTTAGAAAAACATTTTTTTCT
GGCCGAAAATGCCGGAAATATGCCGGAAAAGCCGGTTTTTTACATTTTCT
CGAATTTTCATCAAAAGTTTTTTCTGATTTTTTGCAGAAAAATGCGTATT
CCCAATGCTTAAAACATGGCTGAGTTTTTTTGATTTTTGAAAAAAATTTT
TTTTTGGTTGAAAATGCCGGAAATCGCCGTTTTTGCAGATTTTCATTAGA
TTTTTTTCTTGTATTTCACTCAAAAACATTATTGATAACAACATCAAGCA
TGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTATTTA
TTTTTCCCCTACAACCCTTCCCTCTCCCCCATCAACAATCAATGATGAAT
TTATTGCGTTATGCATTTTCGCTAAACGATATACTTTTTGACTGATTTTT
TTCTCCTCGCATTTCTATCCAACTTTCATCATCAGGTAGGTCCATTCAGC
ATCTAGCTTGTTTCGTTTGATTTCGCATTACAGTGGAACCTCTAATTAGC
GGACACCATCGGGGAAAGGGGTTAGTGTCCGCTAATTAGAAGTGTCCGCC
TTTTAGAAACTTTTGATCTCGGAGCTCCAATTTTGAAATTAAGCCATCCC
AGGGTGTCGAAAATACAAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAGTACTTATCTGCAGACACTAGGCCCTAGAAGAACAAGAGAA
AGGTTATTAAAACGCAACAATTTAGTTTTTAACAAATAAAAGAAAATCAG
TGATTTACGATTTCTTTGGCCCACCTAAATTCGTTGAATGGGTCAAGAGA
AAACTGGAAATTTATAGAAATAATTTGAATGATAAGACTAATAAGTGCTC
GAAATAAAAATATCTAAAATTTTTTTTTTCGATTTTGGACGTTTGTGACC
AGTTTGATATTCAATGTCCGCTAATTGGAGAGCTAAATAGGGGTTTTGGT
CATTTCGTGCGAAAAAATTTGTCCGCTAATCAGAGGGTCCGCTAATTGAG
TGTCCGCCTTTTAGAAACTTTTTTATGAGGATTTGACTAGGAAACGGCCG
AGGAAAATATAATTGTCCGCTAATCAGAGGTGTCCTTCTTTTAGAGTGTC
CGTTAATTAGAGATTTTACTGTATAACACTGATATGAACAATGCGAAAAA
AGTTACAAATGGATAAACGATTGGGACCCTTGTTTACATGATCTGGAAAT
AGTGGTACAGTGGCATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCA
GTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAAC
ATCGATGGTGAGTAAAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGT
TTATAAGATAACTAAAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCT
GGTTAGGTCCCTTGATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACC
ATGAACAGTCATCAGTCATCATTAAATTGTATCTTTTACATTAGATTGAA
AGTTACGTTTTTCTGCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTTCCA
TAACCTTGATAATTAAATTTTACCCTTTTTTTCAGTCAACTCACCACTAC
TGTCACACTTGGCGGAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTG
TCACGAGCCAAAGCACGCGATGAAAGCCAGTTGAAACGTTACCAACAACA
AGCTAAAGACCTTGATACACAAATCATGTACAAACAAAAAGAAATTGAAC
GTATAAAATCCGAAGTAGAAACTTTGCGTAAGAAACGCAATCGTTGCGAT
GACGAGACGGCGAAACTTAAGAAAAAACTCGCTTCTTGCTCGAACGCGAT
TCGCGAACTTCCTTACGGACAAAACTCGAACACGGGGGAAGCGCAATCAG
TTGCTCACTCCCCTGCTACGTAAATCTCTTTTATAGTTTTACAAATTTTT
AGTTTTTATAGAGGCGTCTTCATAGTGTAAAACTTATTTTCCTTGTAACT
TGTACATTTTCTTTTTGCATTTTTTACAAACTTATCGGCCCTTTTTACAC
TTTTTATTCCTTGTAAAAAGGAACGCGTGACCTTTCTGATACTTCACTTC
ATATTTGTAGTCTTGATTATCGCGCAGAACCGGTCTAACAGAAAATGACG
TTGTTCAAGTACTCTCAGGTGCCTAATAAATGCCCCCCCTCCCCGCTTTT
TAATTTTTATCCATTTCGTCTTTTTTAAAAGAGGAACACCTTATTTTGTT
CTGATTAGCCAGGTTTTATTCTATAATTACCTCTTGCAGGTATTTAAAGG
TATAATTTCCAACCCCTCGATAAAAATTTTCCAACCTATGAAGAACTTTC
CGCGCGATGACGAGGCTTTCATATTCGAGCATTACTTGATTGTCGCTTTA
TTTCAAAGAATACTTTTTCTTTATGTGATCTTGTGCGATGTATTTCTTTT
TGAACTTTTGGCGCCTGAGAAATTAAAGATTAACAGAGTCAGAATATTTT
TATTTCGAGATAGTATTGTACATAGCTGATGAATATAATATTTCTTTTCA
TTTTTAAAGATATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072428-exon-scaffold_77-1575043694:353050..353094 | TCONS_00072428-exon-scaffold_77-1575043694:353050..353094 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1575043694:350495..351331 | TCONS_00072428-exon-scaffold_77-1575043694:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1575043694:349972..350272 | TCONS_00072428-exon-scaffold_77-1575043694:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1575043694:347438..347500 | TCONS_00072428-exon-scaffold_77-1575043694:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1575043694:346178..347159 | TCONS_00072428-exon-scaffold_77-1575043694:346178..347159 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1510915933:353050..353094 | TCONS_00072428-exon-scaffold_77-1510915933:353050..353094 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1510915933:350495..351331 | TCONS_00072428-exon-scaffold_77-1510915933:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1510915933:349972..350272 | TCONS_00072428-exon-scaffold_77-1510915933:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1510915933:347438..347500 | TCONS_00072428-exon-scaffold_77-1510915933:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1510915933:346178..347159 | TCONS_00072428-exon-scaffold_77-1510915933:346178..347159 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1491911889:353050..353094 | TCONS_00072428-exon-scaffold_77-1491911889:353050..353094 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1491911889:350495..351331 | TCONS_00072428-exon-scaffold_77-1491911889:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1491911889:349972..350272 | TCONS_00072428-exon-scaffold_77-1491911889:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1491911889:347438..347500 | TCONS_00072428-exon-scaffold_77-1491911889:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072428-exon-scaffold_77-1491911889:346178..347159 | TCONS_00072428-exon-scaffold_77-1491911889:346178..347159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_77 | supercontig | scaffold_77:346178..353094 - |
Blast
The following BLAST results are available for this feature:
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