TCONS_00072424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072424
Unique NameTCONS_00072424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=transcript|length=1370bp
ACCTCCTGTCTATCAAAGTTAAGCCATTGCACAACTTTAGATTCATGGAC
CTTATAAAAGCTCACTAGATTTTGCTTCGGACCAAACATCTTCTACTTTC
TGAAGTACAGCAAACAAAATGGCCTCATCCAAAACATTCATCTTTTTGCT
GGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAAGG
AAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCT
TTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAA
ACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTG
CTAGAGATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTAT
GAACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATT
CATGCATTTCAGAAGACAAGGACAGGGttgtTATACATCAGTTGGTATGC
AGTATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGC
GTTTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAG
CAGAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAAAT
GCTGTAAAAGTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGG
TTTCCATACGATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTC
AAACGGAAATGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTT
ATAACAACGGACAATTTTCAGATATTGATATTCAACAATTGAATGCAATG
TACTGCGGTGGACCACATGGATCAGGCACCACAACGACCAAAGCACCGGT
CACTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAAT
GTCTTGGTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAA
ACACGCTTTGAAGCAATGGAAGGAAAATTATTCCAGTCTAATGTACCAGG
AGCTAAATGCGCCGAAGCTTTGAGCAACAACAGTGAATCTGGGATTCGTT
TCAGAGCTAATTGCGATCAAGGCTTCAGAAAAGTTCAAAAAGGCAGATAT
TTTGTCCTTCAACACAAACAAACTGGCAAATGTATTCATCCTAACCGAGG
ATCATCCAACCCTTCTGATGGAACCAAAGCTGTTATTTACCATGATTGCA
ATTCTGGCTCACGTATTCAGTTCAGAGAAGAATAGTTTGACCACTACAGT
AATAATCGATGTATTAAATTATAGAGAAATTTTTAGGTGAAAGATAGATT
GCTACCACCATaaagttaaa
Run BLAST on NCBI

protein sequence of TCONS_00072424-protein

>TCONS_00072424-protein ID=TCONS_00072424-protein|Name=TCONS_00072424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MASSKTFIFLLVGLVCRVAAWNSNMEKEELFEGDIILNDFQKKALSSPLG
YGLTSKKGFNKHWPKGVPIAYEMSAEFARDASKKAKIEAAFRDYEQKTCL
RFVPRTNQQQFMHFRRQGQGCYTSVGMQYRGNFINLGVGCFTHGVLIHEI
MHGLGVWHEQSRGDRDQHIKINYHNMKCCKSQFTERDYTIDSLGFPYDLK
SVMHYGPWAFSNGNGPTIEPLNKRERIYNNGQFSDIDIQQLNAMYCGGPH
GSGTTTTKAPVTSAPRGKLFKQVSSNKCLGLDHNDNLIFTSRC
Run BLAST on NCBI

transcript from alignment at scaffold_77:249774..253475-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at scaffold_77:249774..253475- (Clytia hemisphaerica)
ACCTCCTGTCTATCAAAGTTAAGCCATTGCACAACTTTAGATTCATGGAC
CTTATAAAAGCTCACTAGATTTTGCTTCGGACCAAACATCTTCTACTTTC
TGAAGTACAGCAAACAAAATGGCCTCATCCAAAACATTCATCTTTTTGCT
GGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAGTA
AGAGATTTTCTGTGAAATTATCATAATCATTATGCCAATGGAAAAAGGTT
GAAAATAATTTACACCACAGGTATCTCCAGTAGCGTGGTACCCCCTAGGT
GGGCAACTCTCCCCCTCCCTCAAGCGGCAAATTTTTTGGCAGCGCCGAAT
GACAAGCCTCTAGTTACTTATTTGAGCACCCCTTTGCTCTTTCCACCTTA
GAATTAGCAATTCTAAGCCAAAAAAAAGGAAAAAAATACTTATAATTTTC
ATTCACGCTTCCCTCCCTCCTTATTTTTACAAACATATCTTATTTTCAAA
AAGAGCGCCGAAATCCCTACTTTTGAGAATTGCCTCCCCGTTTGCCCCAA
TTTTGGTCGACCCACCATGCTACTGCATATCTCCTACAATATCTTTGATC
TGTAAACATGAGATAGGGAGGTACACGAGATAGAATTTTAGTCTTAATAG
AGAGATAAATGGTGCAGAACTGTTCAGTCTGACCCTCGGTCCGACATGGG
TATTTATTTTTGTGTTTCAGAGGAAGAACTCTTTGAAGGTGATATTATCC
TGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTC
ACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATTGC
GTATGAAATGTCAGCAGAGTTTGCTAGAGGTGAGTCAAAAAACCTTTACC
TGGGTTTCACCAATTATCCTTGACCCTTCTCATCAATTTTCTGAGTATCA
AGTTAATACTGTAAATATAACTCAGCTGTTACCAGTGTCAATCTCTTGTT
TTAATTGTTGTTTTTTTGTTTTATTTATTTGTCGATTACTTAAACCTAGT
ATTGGCTGCTGAGCAAAAATATCTCCTCTAAGAGAAAATTTCCAGAAAAG
ATTAAGTAATAGTTATCGCACGGTACCGATTACAATATGGGATATATTTT
TCAAGTTCAGATTTTTCGTCATATATTCGAGGAAAATATTGAAAACACTA
CAATTATACTTTTTAGATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATT
CAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACC
AACAACAATTCATGCATTTCAGAAGACAAGGACAGGGGTAACACTTTTTC
TGAACAGCTTTTGATGAACAAACTAAGAAATTGTAGTCTTTGAAAAAGCA
ATAATACCTAAGAAAAAATTGCAAATTTTTGCTGTAAAAAAGTAAAAATG
TGCTACACTGTAGGGTGCGATTCTAAAAGCCATTTTTCGCCGCACATAAC
GTCAGTTGGTAAACCTGTGACTGTATTTGACTTTGAGTTAGGTATTGGTG
TACCAGCAATTGGTAAAACAAAAACAATTTAAAAAACAACTAATAAATGA
ACATTGTCTTTTCAGTTGTTATACATCAGTTGGTATGCAGTATCGTGGCA
ATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCAC
GAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCG
AGACCAACATATCAAGATTAATTACCATAACATGAAATGCTGTGAGTTTT
AAACTACTCAAACTAGAGTCTACTTCTGACGACCATAACTGGTCTCCGTG
TTATACAGTACACCCCTGTGTCACATACCCGCTGGGTACCCAGCCCAAAT
GGAAAATTTGCCTAAAATTTTGTCCCCGGTGGAAAAGATAACATGGAATT
TCAGCCCCACTGGAAAATTGACACTGATTTTATCCCCAGTTATAATAAGG
AAAAAACTGGACTCCCAAACCCCATTGGGATTTCAATAGAAAGTTTCATC
CTCATTGAGAAAAAATCTTTCACCGGGGTGTCCCGCTTAATATTTGTTAA
TTTGAACCTCTTTATAACTCGAATTTCTCATAAAATCGAACAAATTGCTG
GTCCCTTCTGTTAACGATGCCTTATAAACCTTACTCTATATCTCAAAATT
TCTTAACTCGAACAGATATCGGTTCTCCGTGCACCTTCGAGTTATGGAAA
TTCCATTGTACTTTGACTGACTAGAGTCTAGTGCTGATTGTCATAACTGG
CACTCGGGCTATATACTACGTGGTCAGAATGAGAGTCAAAACCACTTCTT
TTTCCATTCATGAGATAATTTTTCAGAAGAATGTAAACCATTTCTTTTCC
TGGGCTAAACAATTGGTTATCTTTCAAAATACCAAAATTGCTAACGTCAG
CAGTTTTTTATAAACATTTTTCCCATAAGGCCAAACATTTTGCTTCTTCA
ATATATTTTGCTGTATTTGGTGACATGATAAATGACGTCACACATTAGTG
AGGTGATCTCTAGCTACAACAAACTAAAATATTTTGGTATTCCACGAAGA
TTCATTCCACTATTACGAGTCCACTCCTATATAAGAAAATAACCTGATAA
CAAACACCGTTTTAATATTTCAGGTAAAAGTCAATTTACAGAGAGAGACT
ACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCAT
TATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCT
GAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTCAGATATTGATA
TTCAACAATTGAATGCAATGTACTGCGGTGGACCACGTAAGTACTTTCTT
TTGATACGAAAGGCCAAACTTACACTACAATCACGTCAAAACAAACAATA
AATCCTGTTATAGCCTAATGATTATAGATACCGGATTTTTGATTTAGGGG
GCCGGTAATAAGCGAATGTACCTTTTAAGTCACTTCGAAGCTGAAAGGGT
TATGAAGACCTTTCTTGAACACTTTCCATTCTGTTATGAAAAAGTTTAAA
CCATCGAAATTGACCTTGGTCTAGACGTATCACTGTACACTTCTTACAAA
GGATAAAGAACATGAGTGGCCATATCAAGGTATCTTTCTCCCTCCTAGAT
GGATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGTGG
CAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCACA
ACGATAACCTCATTTTCACCAGTCGTTGTTAAACACGCTTTGAAGCAATG
GAAGGAAAATTATTCCAGTCTAATGTACCAGGAGCTAAATGCGCCGAAGC
TTTGAGCAACAACAGTGAATCTGGGATTCGTTTCAGAGCTAATTGCGATC
AAGGCTTCAGAAAAGTTCAAAAAGGCAGATATTTTGTCCTTCAACACAAA
CAAACTGGCAAATGTATTCATCCTAACCGAGGATCATCCAACCCTTCTGA
TGGAACCAAAGCTGTTATTTACCATGATTGCAATTCTGGCTCACGTATTC
AGTTCAGAGAAGAATAGTTTGACCACTACAGTAATAATCGATGTATTAAA
TTATAGAGAAATTTTTAGGTGAAAGATAGATTGCTACCACCATAAAGTTA
AA

Coding sequence (CDS) from alignment at scaffold_77:249774..253475-

>TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_77:249774..253475- (Clytia hemisphaerica)
ATGGATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGT
GGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCA
CAACGATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAAGTCAATTTAC
AGAGAGAGACTACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAA
GCGTGATGCATTATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACC
ATTGAACCCCTGAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTC
AGATATTGATATTCAACAATTGAATGCAATGTACTGCGGTGGACCACTTG
TTATACATCAGTTGGTATGCAGTATCGTGGCAATTTCATCAATCTAGGGG
TCGGTTGTTTCACACACGGCGTTTTGATTCACGAAATCATGCATGGTCTT
GGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAACATATCAAGAT
TAATTACCATAACATGAAATGCTATGCTTCGAAGAAAGCAAAGATTGAGG
CAGCATTCAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGG
ACTAACCAACAACAATTCATGCATTTCAGAAGACAAGGACAGGGAGGAAG
AACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCTTTG
AGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAAACA
TTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTGCTA
GAGATGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTGGCTTGGTATG
CCGCGTGGCAGCATGGAACTCCAATATGGAAAATGGATCAGGCACCACAA
CGACCAAAGCACCGGTCACTTCTGCACCACGTGGCAAGCTCTTTAAACAA
GTCAGCAGCAACAAATGTCTTGGTCTTGATCACAACGATAACCTCATTTT
CACCAGTCGTTGTTAAGTAAAAGTCAATTTACAGAGAGAGACTACACCAT
CGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCATTATGGAC
CCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCTGAATAAA
AGGGAAAGAATTTATAACAACGGACAATTTTCAGATATTGATATTCAACA
ATTGAATGCAATGTACTGCGGTGGACCACTTGTTATACATCAGTTGGTAT
GCAGTATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACG
GCGTTTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAA
AGCAGAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAA
ATGCTATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTATG
AACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATTC
ATGCATTTCAGAAGACAAGGACAGGGAGGAAGAACTCTTTGAAGGTGATA
TTATCCTGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTAT
GGCCTCACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCC
AATTGCGTATGAAATGTCAGCAGAGTTTGCTAGAGATGGCCTCATCCAAA
ACATTCATCTTTTTGCTGGTTGGCTTGGTATGCCGCGTGGCAGCATGGAA
CTCCAATATGGAAAATGGATCAGGCACCACAACGACCAAAGCACCGGTCA
CTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGT
CTTGGTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAAGT
AAAAGTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGGTTTCC
ATACGATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTCAAACG
GAAATGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTTATAAC
AACGGACAATTTTCAGATATTGATATTCAACAATTGAATGCAATGTACTG
CGGTGGACCACTTGTTATACATCAGTTGGTATGCAGTATCGTGGCAATTT
CATCAATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCACGAAA
TCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGAC
CAACATATCAAGATTAATTACCATAACATGAAATGCTATGCTTCGAAGAA
AGCAAAGATTGAGGCAGCATTCAGAGATTATGAACAAAAGACATGCTTGA
GATTCGTACCGAGGACTAACCAACAACAATTCATGCATTTCAGAAGACAA
GGACAGGGAGGAAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTC
AGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAG
GGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTC
AGCAGAGTTTGCTAGAGATGGCCTCATCCAAAACATTCATCTTTTTGCTG
GTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAATGG
ATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGTGGCA
AGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCACAAC
GATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAAGTCAATTTACAGAG
AGAGACTACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGT
GATGCATTATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTG
AACCCCTGAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTCAGAT
ATTGATATTCAACAATTGAATGCAATGTACTGCGGTGGACCACTTGTTAT
ACATCAGTTGGTATGCAGTATCGTGGCAATTTCATCAATCTAGGGGTCGG
TTGTTTCACACACGGCGTTTTGATTCACGAAATCATGCATGGTCTTGGGG
TTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAACATATCAAGATTAAT
TACCATAACATGAAATGCTATGCTTCGAAGAAAGCAAAGATTGAGGCAGC
ATTCAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGGACTA
ACCAACAACAATTCATGCATTTCAGAAGACAAGGACAGGGAGGAAGAACT
CTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCTTTGAGTT
CACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAAACATTGG
CCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTGCTAGAGA
TGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTGGCTTGGTATGCCGC
GTGGCAGCATGGAACTCCAATATGGAAAATGGATCAGGCACCACAACGAC
CAAAGCACCGGTCACTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCA
GCAGCAACAAATGTCTTGGTCTTGATCACAACGATAACCTCATTTTCACC
AGTCGTTGTTAAGTAAAAGTCAATTTACAGAGAGAGACTACACCATCGAC
AGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCATTATGGACCCTG
GGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCTGAATAAAAGGG
AAAGAATTTATAACAACGGACAATTTTCAGATATTGATATTCAACAATTG
AATGCAATGTACTGCGGTGGACCACTTGTTATACATCAGTTGGTATGCAG
TATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGCGT
TTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCA
GAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAAATGC
TATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTATGAACA
AAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATTCATGC
ATTTCAGAAGACAAGGACAGGGAGGAAGAACTCTTTGAAGGTGATATTAT
CCTGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCC
TCACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATT
GCGTATGAAATGTCAGCAGAGTTTGCTAGAGATGGCCTCATCCAAAACAT
TCATCTTTTTGCTGGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCC
AATATGGAAAATGGATCAGGCACCACAACGACCAAAGCACCGGTCACTTC
TGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTG
GTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAA
GTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGGTTTCCATAC
GATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTCAAACGGAAA
TGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTTATAACAACG
GACAATTTTCAGATATTGATATTCAACAATTGAATGCAATGTACTGCGGT
GGACCACTTGTTATACATCAGTTGGTATGCAGTATCGTGGCAATTTCATC
AATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCACGAAATCAT
GCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAAC
ATATCAAGATTAATTACCATAACATGAAATGCTATGCTTCGAAGAAAGCA
AAGATTGAGGCAGCATTCAGAGATTATGAACAAAAGACATGCTTGAGATT
CGTACCGAGGACTAACCAACAACAATTCATGCATTTCAGAAGACAAGGAC
AGGGAGGAAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAA
GAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTT
TCAATAAACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCA
GAGTTTGCTAGAGATGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTG
GCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044959XLOC_044959Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072424-proteinTCONS_00072424-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072424-exon-scaffold_77-1575043694:253279..253475TCONS_00072424-exon-scaffold_77-1575043694:253279..253475Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1575043694:252597..252755TCONS_00072424-exon-scaffold_77-1575043694:252597..252755Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1575043694:252139..252259TCONS_00072424-exon-scaffold_77-1575043694:252139..252259Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1575043694:251685..251860TCONS_00072424-exon-scaffold_77-1575043694:251685..251860Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1575043694:250590..250802TCONS_00072424-exon-scaffold_77-1575043694:250590..250802Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1575043694:249774..250277TCONS_00072424-exon-scaffold_77-1575043694:249774..250277Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:253279..253475TCONS_00072424-exon-scaffold_77-1510915933:253279..253475Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:252597..252755TCONS_00072424-exon-scaffold_77-1510915933:252597..252755Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:252139..252259TCONS_00072424-exon-scaffold_77-1510915933:252139..252259Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:251685..251860TCONS_00072424-exon-scaffold_77-1510915933:251685..251860Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:250590..250802TCONS_00072424-exon-scaffold_77-1510915933:250590..250802Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1510915933:249774..250277TCONS_00072424-exon-scaffold_77-1510915933:249774..250277Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:253279..253475TCONS_00072424-exon-scaffold_77-1491911889:253279..253475Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:252597..252755TCONS_00072424-exon-scaffold_77-1491911889:252597..252755Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:252139..252259TCONS_00072424-exon-scaffold_77-1491911889:252139..252259Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:251685..251860TCONS_00072424-exon-scaffold_77-1491911889:251685..251860Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:250590..250802TCONS_00072424-exon-scaffold_77-1491911889:250590..250802Clytia hemisphaericaexon
TCONS_00072424-exon-scaffold_77-1491911889:249774..250277TCONS_00072424-exon-scaffold_77-1491911889:249774..250277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:249774..253475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0412091	0.0976919	0.039287	0	0.128753	0.191377	0.185756	0.203514	35.8296	26.5088	30.4003	70.8907	1.35344	1.19914	45.3798	64.0407	3.24996	3.89099	0.665705	0.891907	8.43183	9.19422	0.209505	0.536614	0.44092	0.449227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00072424 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 2.328e-29
Identity = 88/276 (31.88%), Postives = 120/276 (43.48%), Query Frame = 2 
Query:  203 ELFEGDIILNDFQKKALSSPLGYGLTSKKGFNKHWPKGVPIAYEMSAEFARDASKKAKIEAAFRDYEQKTCLRFVPRTNQQQFMHFRRQGQGCYTSVGMQYRG-NFINLGVGCFTHGVLIHEIMHGLGVWHEQSRGDRDQHIKINYHNMKCCKSQ--FTERDYTIDSLGFPYDLKSVMHYGPWAFSNGNGPTI--EPLNKRERIYNNGQFSDIDIQQLNAMY-------------------CGGPHGSGTTTTKAPVTSAPRGKLFKQVSSNKCLG 958
            +LFEGDI L+  Q +           S  G    WP  +P   E S E     + K  I  AF  Y  KTC+ F P   +  ++   + G GC++SVG +  G   +++G  C     + HE +H LG WHEQSR DRD +++I +  +   +     T  D   DSL  PYD  SVMHY   AF NG  PTI     +  + I     FSD D+ +LN +Y                   CG    SG       V+  PRG      +  +C G
Sbjct:   47 DLFEGDIRLDRAQIR----------NSIIGEKYRWPHTIPYVLEDSLEM----NAKGVILNAFERYRLKTCIDFKPWAGETNYISVFK-GSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQSSGDNADWQRVSQVPRGPESDHSNMGQCQG 307
The following BLAST results are available for this feature:
BLAST of TCONS_00072424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B2.328e-2931.88Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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