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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072420 ID=TCONS_00072420|Name=TCONS_00072420|organism=Clytia hemisphaerica|type=transcript|length=2426bp
CCGCCCAACAAACTACTCAACAAGCCGCCCAAAAATCCGCCAAACAACCT
ACCCAATCAACCACCCGACAACCTACTCAACCAGTTGCCAAACAATCTCT
CCAACAAGCCGCCCAACAACCTACTCAACTTGCCACCCGACAAGCCGCCA
AACTACCTATCCAATCAACCAACCGACAACCTACTCAACCAGTTGTCCAA
CAACCTCTCCAACATGCCACCCAACAAGCCGTCAAACAACCTACTCAATC
GACCACCCAACAACCTACCCAAAAAGCCACCCAACAACCTACTCAACCAG
CCGACAAACAAACTTCCCAAAAAGCCACCCAACAACCTACTCCAACAGCT
ATCCAACAAGCCACCAAAAAACCTACTCGATCTACTGACAAAAACATTGC
GGAATCAATAGAAAGAATTGGTGCAGCTCTACGAGAACGTCAACAAATAG
AATCTATATCGGCGCAAAATACGACCGAGCCACCTCAAGGGTCCTCGGGG
GCGACGCAAAGAATGCCTCATATACAACCGCAACAAAGACTATCTGCGCA
ACCTGGATTATTTCCGCCACCGTCGGATAAATTTTCGTCACCACCAGTAT
TATCTTTACCATCACAANAAGCCTCGCCACAACAAGGGGCTACTGTTTTA
CCGCACGATGCAACTGATTCCCCGCAAAAAACACCTGCACCACCTACAGC
AGCTCGAAATTTACCTGTGTCACAGCATCGAAAATTCATGCCATGGCCAC
AAACGACACCTGACAGACAGCCTTTTCCACAAACTTCGCCAACATCACTT
CCTCAAAGTCCATCAGTCAACAGTCAGCCGGCTAAAACGCTATTGAAAAG
ACCACTTGTTCAAACGCAAGAAAATCCTACCGCACCACAACAAACAACAG
CTGTGTCACCGCAACAAAGGGTGCAGAGAAGAACGTTACCACAAACTTTA
TTACCCCAAACAAATGCAGCCACCAGACAAAATGTCAAACGGCAAAGAGA
CCACCCATCATTTATGTCACCGAATAGTCAAGAAAACATACCAAAGGCAC
CAGCTCCAAATGAACTAACCGAGAAATCTAGAAAACCAATATCTAGTCCC
ACTCCGACGGAATCGAAAGCGAAAACAACAAACAGTCAAACCAAAAAGAC
GACAATGAATGAAAGACAAAATACAgaaaaagttcaaaacaaaGAGTGGG
AAGAATTCAAAAATAAGATATTGCTTTCTGCGAAAGATAACGAACATGTT
TTACAATCACATAAAGACAACTTGCGTGAGCAGCTTTGTGAAGAGTACGC
ACCACCTTCAAAAAAGCCTGTTACCCAGTCCTCGGAACTCGCGAGTAAGG
ATGAAAAGCCTAAGGACATCCAACCAATGTGTCTGATTGTTGGGAAAGAT
TTAGCCCTTCCAGTGAAAGTAGAAAAGAAGAAACCGAAAGATAAATCTCA
ATCAAATGAGAATGATGGTCTACAAAAGTTTCGCGAACATTTAAAAAACA
ACGAAGAGCATATTCAGAACCTGGAAGCAGAACTTCAAGATTTGGATTCG
ATAATGGCAAACTATGAAGATGaccaaaatgaagaaaaagaagtgAACAT
GGGGGACGATAAAGATTCGTTGTCAGCAGACTCATCAGTGCATGAAGAAC
AAACACTCAGCCGGTTGGATAAAATCCTCCTGGAGAACAGAAAGGTTCGC
GAGGAACAACAACACGAAACAGGTTCTGAACAGTTGAATACTATTCGTCG
AGAAATCGAACAAATGCGTTGCCAAATGAATGAATATGACAACCAGTTTC
ATCGACAACCTGGTAGCATTGAGAAAAATTTGGATGAAGCAGCGGCTTTA
AGTAGACACATCATGGAACCTACTTCTTTACCAGAGATACAATTCAAATG
TCAAACCGTCTCATCATGCCAACCTGACGAACCATGTCTGGACGAATCTC
CAGTCAAAAGACCGGAAAGAAAATCCTTCTCACCTGAAACAACTTTCTAC
AACCTAAGAGAATATGGCGTTATCCCTGAACGATACAACTTCCCAGGATG
TCCAGAGAAAGTATTGACTCCTTCCAGAGAATTGGTCCACTTTCCCAGCA
TCGATGTCAACACTCCATTGACATGTTTCACAGAGTTCCAGGACATTGAA
GAAGAGACTCCATCAAGAGACGTGATGAAGGAAGCCTTATCAAACGAACT
GCTTCAAGTCATTTCACAGACATCACAAGAAGTAAATTCACCCGAAGAAT
TACCACGCATCGCGTCTTCCACCCTTTTGTCTGATTTCTTGTCACGCTCT
TCGCTCACCTTGAACGATTCCCGCCCGGAGGGTGGTGATTTCGGTGCTGT
CGGACAACGCCCTTCTGGtgataaagaagaagaaaaaccaAATACTCTTG
AAATTGAAAACGTAGAACAAGCAAAA Run BLAST on NCBI transcript from alignment at scaffold_77:230386..233696- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072420 ID=TCONS_00072420|Name=TCONS_00072420|organism=Clytia hemisphaerica|type=transcript|length=3311bp|location=Sequence derived from alignment at scaffold_77:230386..233696- (Clytia hemisphaerica)
CCGCCCAACAAACTACTCAACAAGCCGCCCAAAAATCCGCCAAACAACCT
ACCCAATCAACCACCCGACAACCTACTCAACCAGTTGCCAAACAATCTCT
CCAACAAGCCGCCCAACAACCTACTCAACTTGCCACCCGACAAGCCGCCA
AACTACCTATCCAATCAACCAACCGACAACCTACTCAACCAGTTGTCCAA
CAACCTCTCCAACATGCCACCCAACAAGCCGTCAAACAACCTACTCAATC
GACCACCCAACAACCTACCCAAAAAGCCACCCAACAACCTACTCAACCAG
CCGACAAACAAACTTCCCAAAAAGCCACCCAACAACCTACTCCAACAGCT
ATCCAACAAGCCACCAAAAAACCTACTCGATCTACTGACAAAAACATTGC
GGAATCAATAGAAAGAATTGGTGCAGCTCTACGAGAACGTCAACAAATAG
AATCTATATCGGCGCAAAATACGACCGAGCCACCTCAAGGGTCCTCGGGG
GCGACGCAAAGAATGCCTCATATACAACCGCAACAAAGACTATCTGCGCA
ACCTGGATTATTTCCGCCACCGTCGGATAAATTTTCGTCACCACCAGTAT
TATCTTTACCATCACAANAAGGCAAATTCGTCAACGTTCCAAGTAATAAC
TCGTGATTCATAAATTAACATTTTAGAAGAACATGATCAAACACGACCAA
CGCAATCCTCGACAACAAACGCCCAAAAACCTACCCAAACAGGCGCCCAA
CCACCCATGCAAAAAGCCGCCAAACAACCTGCCCAACCTGCCACCCAACA
AGCTGTCAACGTCAAACAACCTACTCAATTGACCGCCCAACAAACTACTC
AACCAGCCGCCCAAAAATCCATCAAACAACCTACCCAATCAACCACCCGA
CAACCTACTCAACCAGTTGCCAAACAATCTCTCCAACAAGCCGCCCAACA
ACCTACTCTAATTGCCACCCGACAAGCCGCCAAACAACCTATTCAATCAA
CCAACCGACAACCTACTCAACCAGTTGTCCAACAACCTCTCCAACATGCC
ACCGAACAAGCCGTCAAACAACCTACTCAATCGACCACCCAACAACCTAC
CCAAAAAGCCACCCAACAACCTACTCAACCAGCCGACAAACAAACTTCCC
AAAAAGCCACCCAACAACCTACTCCAACAGCTATCCAACAAGCCACCAAA
AAACCTACTCGATCTACTGACAAAAACATTGCGGAATCAATAGAAAGAAT
TGGTGCAGCTCTACGAGAACGTCAACAAATAGAATCTATATCGGCGCAAA
ATACGACCGAGCCACCTCAAGGGTCCTCGGGGGCGACGCAAAGAATGCCT
CATATACAACCGCAACAAAGACTATCTGCGCAACCTGGATTATTTCCGCC
ATCGTCGGATGAATTTTCGTCACCACCAGTATTATCTTTACCATCACAAG
AAGCCTCGCCACAACAAGGGGCTACTGTTTTACCGCACGATGCAACTGAT
TCCCCGCAAAAAACACCTGCACCACCTACAGCAGCTCGAAATTTACCTGT
GTCACAGCATCGAAAATTCATGCCATGGCCACAAACGACACCTGACAGAC
AGCCTTTTCCACAAACTTCGCCAACATCACTTCCTCAAAGTCCATCAGTC
AACAGTCAGCCGGCTAAAACGCTATTGAAAAGACCACTTGTTCAAACGCA
AGAAAATCCTACCGCACCACAACAAACAACAGCTGTGTCACCGCAACAAA
GGGTGCAGAGAAGAACGTTACCACAAACTTTATTACCCCAAACAAATGCA
GCCACCAGACAAAATGTCAAACGGCAAAGAGACCACCCATCATTTATGTC
ACCGAATAGTCAAGAAAACATACCAAAGGCACCAGCTCCAAATGAACTAA
CCGAGAAATCTAGAAAACCAATATCTAGTCCCACTCCGACGGAATCGAAA
GCGAAAACAACAAACAGTCAAACCAAAAAGACGACAATGAATGAAAGACA
AAATACAGAAAAAGTTCAAAACAAAGAGTGGGAAGAATTCAAAAATAAGA
TATTGCTTTCTGCGAAAGATAACGAACATGTTTTACAATCACATAAAGAC
AACTTGCGTGAGCAGCTTTGTGAAGAGTACGCACCACCTTCAAAAAAGCC
TGTTACCCAGTCCTCGGAACTCGCGAGTAAGGATGAAAAGCCTAAGGACA
TCCAACCAATGTGTCTGATTGTTGGGAAAGATTTAGCCCTTCCAGTGAAA
GTAGAAAAGAAGAAACCGAAAGATAAATCTCAATCAAATGAGAATGATGG
TCTACAAAAGTTTCGCGAACATTTAAAAAACAACGAAGAGCATATTCAGA
ACCTGGAAGCAGAACTTCAAGATTTGGATTCGATAATGGCAAACTATGAA
GATGACCAAAATGAAGAAAAAGAAGTGAACATGGGGGACGATAAAGATTC
GTTGTCAGCAGACTCATCAGTGCATGAAGAACAAACACTCAGCCGGTTGG
ATAAAATCCTCCTGGAGAACAGAAAGGTTCGCGAGGAACAACAACACGAA
ACAGGTTCTGAACAGTTGAATACTATTCGTCGAGAAATCGAACAAATGCG
TTGCCAAATGAATGAATATGACAACCAGTTTCATCGACAACCTGGTAGCA
TTGAGAAAAATTTGGATGAAGCAGCGGCTTTAAGTAGACACATCATGGAA
CCTACTTCTTTACCAGAGATACAATTCAAATGTCAAACCGTCTCATCATG
CCAACCTGACGAACCATGTCTGGACGAATCTCCAGTCAAAAGACCGGAAA
GAAAATCCTTCTCACCTGAAACAACTTTCTACAACCTAAGAGAATATGGC
GTTATCCCTGAACGATACAACTTCCCAGGATGTCCAGAGAAAGTATTGAC
TCCTTCCAGAGAATTGGTCCACTTTCCCAGCATCGATGTCAACACTCCAT
TGACATGTTTCACAGAGTTCCAGGACATTGAAGAAGAGACTCCATCAAGA
GACGTGATGAAGGAAGCCTTATCAAACGAACTGCTTCAAGTCATTTCACA
GACATCACACNGAAGGAAGCCTTATCAAACGAACTGCTTCAAGTCATTAC
ACAGACATCACAAGAAGTAAATTCACCCGAAGAATTACCACGCATCGCGT
CTTCCACCCTTTTGTCTGATTTCTTGTCACGCTCTTCGCTCACCTTGAAC
GATTCCCGCCCGGAGGGTGGTGATTTCGGTGCTGTCGGACAACGCCCTTC
TGGTGATAAAGAAGAAGAAAAACCAAATACTCTTGAAATTGAAAACGTAG
AACAAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072420-exon-scaffold_77-1575043694:233076..233696 | TCONS_00072420-exon-scaffold_77-1575043694:233076..233696 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1575043694:230644..232243 | TCONS_00072420-exon-scaffold_77-1575043694:230644..232243 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1575043694:230386..230590 | TCONS_00072420-exon-scaffold_77-1575043694:230386..230590 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1510915933:233076..233696 | TCONS_00072420-exon-scaffold_77-1510915933:233076..233696 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1510915933:230644..232243 | TCONS_00072420-exon-scaffold_77-1510915933:230644..232243 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1510915933:230386..230590 | TCONS_00072420-exon-scaffold_77-1510915933:230386..230590 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1491911889:233076..233696 | TCONS_00072420-exon-scaffold_77-1491911889:233076..233696 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1491911889:230644..232243 | TCONS_00072420-exon-scaffold_77-1491911889:230644..232243 | Clytia hemisphaerica | exon |
| TCONS_00072420-exon-scaffold_77-1491911889:230386..230590 | TCONS_00072420-exon-scaffold_77-1491911889:230386..230590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:230386..233696 - |
Blast
The following BLAST results are available for this feature:
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