TCONS_00072415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072415
Unique NameTCONS_00072415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072415 ID=TCONS_00072415|Name=TCONS_00072415|organism=Clytia hemisphaerica|type=transcript|length=1687bp
taaatccACTCCACTTTTTGATCTTACTGGTATTTACACTATGTAGTTTG
ATTGAACaggtttttttcgtttttttttattgaagagTAATCATTTAAAT
CAGTTTAATCAAtcaaaatcaagttaaaatggTAAAAGATAAAGGCCACT
TTGATgttgaaaatgcaaaattatGTCCCTTATAACACCGGCTCTCAATC
CACTGCGACCAAAAAACAACGCTAATATCAGCCAGCGTAAAAAGGGCTGA
TAAAGTATCAAAGTTATTGTTGGGGATTGGTATAATAAGTAGCTTTCATA
TCCCATAGTTCAGGAGATCCCAAGATACTCTCTGAGACATTTCGGTAGAT
TATCATTCAGAAAGTTGTCACTGAAACTTCTCAAGCAAGCCATTCGTGCC
ATATGTTTCAaggagattttcaaatgattatATGGCGGAGTCACTTTCGC
AAATTGTAGCACATATTTTGCATTTTGGAAAGCTATCTCCTGCATGTGTA
AATTGAATGAAAAGTCACCAGTCCAACTCTTGAAATCATAAATTATACTT
TGTTCTCCCGATCCAAAATCATACAAATAAATTGACATAGAGCAATTGTG
TCCTTCTGGAGGGACTTGAAGGCCAATGACGAAGTACTGGTCAAAACATT
CCACAACTTTGTTGAAAAAGATATGTTTTCCTTGGTAAAGCAAATTGATT
CTTTTCAATGGGATAACCTCATTTTTGCTGTTGACTTGAAagaattttaa
gctttttaccCTCGTTTTGATATCGCTCAAGTGCATAAAGAACACAGATT
TTGACAAATGGTACAACATTTGATCCTCGAAAGTCTCTTTTTCATCATCA
ATAGTCACTCGTTCAGCCAGAACttgatttcctgaaaaatcgaAACCAGA
TATAAACGGACCATAACCATAGTCGTGGATAAAAATTCTCTCCGAACTAA
TATCTAGGGACAGCTCGAGATCTATATAGGATGTGTCGAATGGACCGGGT
TCGAAACCAAGCTCAGTGCAATTACTCAGCACAACACGCTTGAAATGTGA
TAGCTTTGTCTTTTCCATTAAGACAATATCAGCCACAAAATTAAAATCAC
CGGTAGAAACAAGCAACATTAAGACGTAACCATATTCTTTGGTTTTTCCC
TGCCAAAAACATTGGATGCATTGCAAAGCTTTATATGGCTCCAGTTCAAT
TACACAATCCTCCGTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAG
GAGCCCCTAAAAGGTGTTTCAAGCTTCCACTGTGTAATATTAAAGGTTGG
CTCCCATCTTCCAAAGTCGAAGACTTCTCCAATATTAACCAACGATTAAG
TGAAGCGTTATAGGGCCAATCatattccaaaaaattagattCGTTCCACG
TTGGTAATTTAATCAAACTCGTTTGTAATTTAGCTGTTTCCTCATTGAAT
GAATAAACAGTGATGACATGATCATCTGTGCTGTCCCGTTGCCTGGTATA
TGAAGTATAATATCTTCCAGAGCTGTCAAAGCCATGCATGGTTCGGTATA
CGGGCGGGTCAAGACCAGTCCACGTTTCTTTTGTCTCGACACATTCGGTG
AGATGAGGTGGTAAGAATGCTTGCCGTGGGTAAGCCAACATTCCTATTTT
GATATTTGAGGATTATTTTAGCTCGTTTGCATTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_77:193344..195030-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072415 ID=TCONS_00072415|Name=TCONS_00072415|organism=Clytia hemisphaerica|type=transcript|length=1687bp|location=Sequence derived from alignment at scaffold_77:193344..195030- (Clytia hemisphaerica)
TAAATCCACTCCACTTTTTGATCTTACTGGTATTTACACTATGTAGTTTG ATTGAACAGGTTTTTTTCGTTTTTTTTTATTGAAGAGTAATCATTTAAAT CAGTTTAATCAATCAAAATCAAGTTAAAATGGTAAAAGATAAAGGCCACT TTGATGTTGAAAATGCAAAATTATGTCCCTTATAACACCGGCTCTCAATC CACTGCGACCAAAAAACAACGCTAATATCAGCCAGCGTAAAAAGGGCTGA TAAAGTATCAAAGTTATTGTTGGGGATTGGTATAATAAGTAGCTTTCATA TCCCATAGTTCAGGAGATCCCAAGATACTCTCTGAGACATTTCGGTAGAT TATCATTCAGAAAGTTGTCACTGAAACTTCTCAAGCAAGCCATTCGTGCC ATATGTTTCAAGGAGATTTTCAAATGATTATATGGCGGAGTCACTTTCGC AAATTGTAGCACATATTTTGCATTTTGGAAAGCTATCTCCTGCATGTGTA AATTGAATGAAAAGTCACCAGTCCAACTCTTGAAATCATAAATTATACTT TGTTCTCCCGATCCAAAATCATACAAATAAATTGACATAGAGCAATTGTG TCCTTCTGGAGGGACTTGAAGGCCAATGACGAAGTACTGGTCAAAACATT CCACAACTTTGTTGAAAAAGATATGTTTTCCTTGGTAAAGCAAATTGATT CTTTTCAATGGGATAACCTCATTTTTGCTGTTGACTTGAAAGAATTTTAA GCTTTTTACCCTCGTTTTGATATCGCTCAAGTGCATAAAGAACACAGATT TTGACAAATGGTACAACATTTGATCCTCGAAAGTCTCTTTTTCATCATCA ATAGTCACTCGTTCAGCCAGAACTTGATTTCCTGAAAAATCGAAACCAGA TATAAACGGACCATAACCATAGTCGTGGATAAAAATTCTCTCCGAACTAA TATCTAGGGACAGCTCGAGATCTATATAGGATGTGTCGAATGGACCGGGT TCGAAACCAAGCTCAGTGCAATTACTCAGCACAACACGCTTGAAATGTGA TAGCTTTGTCTTTTCCATTAAGACAATATCAGCCACAAAATTAAAATCAC CGGTAGAAACAAGCAACATTAAGACGTAACCATATTCTTTGGTTTTTCCC TGCCAAAAACATTGGATGCATTGCAAAGCTTTATATGGCTCCAGTTCAAT TACACAATCCTCCGTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAG GAGCCCCTAAAAGGTGTTTCAAGCTTCCACTGTGTAATATTAAAGGTTGG CTCCCATCTTCCAAAGTCGAAGACTTCTCCAATATTAACCAACGATTAAG TGAAGCGTTATAGGGCCAATCATATTCCAAAAAATTAGATTCGTTCCACG TTGGTAATTTAATCAAACTCGTTTGTAATTTAGCTGTTTCCTCATTGAAT GAATAAACAGTGATGACATGATCATCTGTGCTGTCCCGTTGCCTGGTATA TGAAGTATAATATCTTCCAGAGCTGTCAAAGCCATGCATGGTTCGGTATA CGGGCGGGTCAAGACCAGTCCACGTTTCTTTTGTCTCGACACATTCGGTG AGATGAGGTGGTAAGAATGCTTGCCGTGGGTAAGCCAACATTCCTATTTT GATATTTGAGGATTATTTTAGCTCGTTTGCATTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044954XLOC_044954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072415-exon-scaffold_77-1575043694:193344..195030TCONS_00072415-exon-scaffold_77-1575043694:193344..195030Clytia hemisphaericaexon
TCONS_00072415-exon-scaffold_77-1510915933:193344..195030TCONS_00072415-exon-scaffold_77-1510915933:193344..195030Clytia hemisphaericaexon
TCONS_00072415-exon-scaffold_77-1491911889:193344..195030TCONS_00072415-exon-scaffold_77-1491911889:193344..195030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:193344..195030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51849 2.42163 15.3712 21.4729 1.46819 1.2205 1.83363 1.72749 0.794872 1.01298 0.521102 0.698707 0.757802 1.13649 2.13204 2.56238 2.55705 2.51508 0 0.402334 0.670244 0.716477 5.0019 2.69456 1.96677 1.58169 0.239641 0.369749 1.70051 3.84615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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