TCONS_00072414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072414
Unique NameTCONS_00072414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072414 ID=TCONS_00072414|Name=TCONS_00072414|organism=Clytia hemisphaerica|type=transcript|length=1684bp
taaatccACTCCACTTTTTGATCTTACTGGTATTTACACTATGTAGTTTG
ATTGAACaggtttttttcgtttttttttattgaagagTAATCATTTAAAT
CAGTTTAATCAAtcaaaatcaagttaaaatggTAAAAGATAAAGGCCACT
TTGATgttgaaaatgcaaaattatGTCCCTTATAACACCGGCTCTCAATC
CACTGCGACCAAAAAACAACGCTAATATCAGCCAGCGTAAAAAGGGCTGA
TAAAGTATCAAAGTTATTGTTGGGGATTGGTATAATAAGTAGCTTTCATA
TCCCATAGTTCAGGAGATCCCAAGATACTCTCTGAGACATTTCGGTAGAT
TATCATTCAGAAAGTTGTCACTGAAACTTCTCAAGCAAGCCATTCGTGCC
ATATGTTTCAaggagattttcaaatgattatATGGCGGAGTCACTTTCGC
AAATTGTAGCACATATTTTGCATTTTGGAAAGCTATCTCCTGCATGTGTA
AATTGAATGAAAAGTCACCAGTCCAACTCTTGAAATCATAAATTATACTT
TGTTCTCCCGATCCAAAATCATACAAATAAATTGACATAGAGCAATTGTG
TCCTTCTGGAGGGACTTGAAGGCCAATGACGAAGTACTGGTCAAAACATT
CCACAACTTTGTTGAAAAAGATATGTTTTCCTTGGTAAAGCAAATTGATT
CTTTTCAATGGGATAACCTCATTTTTGCTGTTGACTTGAAagaattttaa
gctttttaccCTCGTTTTGATATCGCTCAAGTGCATAAAGAACACAGATT
TTGACAAATGGTACAACATTTGATCCTCGAAAGTCTCTTTTTCATCATCA
ATAGTCACTCGTTCAGCCAGAACttgatttcctgaaaaatcgaAACCAGA
TATAAACGGACCATAACCATAGTCGTGGATAAAAATTCTCTCCGAACTAA
TATCTAGGGACAGCTCGAGATCTATATAGGATGTGTCGAATGGACCGGGT
TCGAAACCAAGCTCAGTGCAATTACTCAGCACAACACGCTTGAAATGTGA
TAGCTTTGTCTTTTCCATTAAGACAATATCAGCCACAAAATTAAAATCAC
CGGTAGAAACAAGCAACATTAAGACGTAACCATATTCTTTGGTTTTTCCC
TGCCAAAAACATTGGATGCATTGCAAAGCTTTATATGGCTCCAGTTCAAT
TACACAATCCTCCGTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAG
GAGCCCCTAAAAGGTGTTTCAAGCTTCCACTGTGTAATATTAAAGGCTGG
CTCCCATCTTCCAAAGTCGAAGGCTTCTCAAACACAAACCAACGATTAAA
CAAAGGATCATACGGCAAGTCATATTCATTATAGCGCAAGTCCCATGATG
GTAATTGAATTAAACTCACTTGTAGTTTATCTGTTTCCTCATTGAATGAA
TAGACGCTTATGATATCGTCACCTGTTTTATCCTCAGCTCCGCAATATAC
GGTGTAATATTTCCCAGAGCTGTCGAAGCCACGTATACTTATTTGCTGGG
GGCGGTCAAGACCAGCCCAGATTTCTTTTGTCTCAACACATTCGGTGAGA
TGAGGTGGTAAGAACGATTGACGTGGGTAAGCCaacatttcttttttgaa
aatactctgaacattatttcataattattatcac
Run BLAST on NCBI

transcript from alignment at scaffold_77:188672..195030-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072414 ID=TCONS_00072414|Name=TCONS_00072414|organism=Clytia hemisphaerica|type=transcript|length=6359bp|location=Sequence derived from alignment at scaffold_77:188672..195030- (Clytia hemisphaerica)
TAAATCCACTCCACTTTTTGATCTTACTGGTATTTACACTATGTAGTTTG
ATTGAACAGGTTTTTTTCGTTTTTTTTTATTGAAGAGTAATCATTTAAAT
CAGTTTAATCAATCAAAATCAAGTTAAAATGGTAAAAGATAAAGGCCACT
TTGATGTTGAAAATGCAAAATTATGTCCCTTATAACACCGGCTCTCAATC
CACTGCGACCAAAAAACAACGCTAATATCAGCCAGCGTAAAAAGGGCTGA
TAAAGTATCAAAGTTATTGTTGGGGATTGGTATAATAAGTAGCTTTCATA
TCCCATAGTTCAGGAGATCCCAAGATACTCTCTGAGACATTTCGGTAGAT
TATCATTCAGAAAGTTGTCACTGAAACTTCTCAAGCAAGCCATTCGTGCC
ATATGTTTCAAGGAGATTTTCAAATGATTATATGGCGGAGTCACTTTCGC
AAATTGTAGCACATATTTTGCATTTTGGAAAGCTATCTCCTGCATGTGTA
AATTGAATGAAAAGTCACCAGTCCAACTCTTGAAATCATAAATTATACTT
TGTTCTCCCGATCCAAAATCATACAAATAAATTGACATAGAGCAATTGTG
TCCTTCTGGAGGGACTTGAAGGCCAATGACGAAGTACTGGTCAAAACATT
CCACAACTTTGTTGAAAAAGATATGTTTTCCTTGGTAAAGCAAATTGATT
CTTTTCAATGGGATAACCTCATTTTTGCTGTTGACTTGAAAGAATTTTAA
GCTTTTTACCCTCGTTTTGATATCGCTCAAGTGCATAAAGAACACAGATT
TTGACAAATGGTACAACATTTGATCCTCGAAAGTCTCTTTTTCATCATCA
ATAGTCACTCGTTCAGCCAGAACTTGATTTCCTGAAAAATCGAAACCAGA
TATAAACGGACCATAACCATAGTCGTGGATAAAAATTCTCTCCGAACTAA
TATCTAGGGACAGCTCGAGATCTATATAGGATGTGTCGAATGGACCGGGT
TCGAAACCAAGCTCAGTGCAATTACTCAGCACAACACGCTTGAAATGTGA
TAGCTTTGTCTTTTCCATTAAGACAATATCAGCCACAAAATTAAAATCAC
CGGTAGAAACAAGCAACATTAAGACGTAACCATATTCTTTGGTTTTTCCC
TGCCAAAAACATTGGATGCATTGCAAAGCTTTATATGGCTCCAGTTCAAT
TACACAATCCTCCGTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAG
GAGCCCCTAAAAGGTGTTTCAAGCTTCCACTGTGTAATATTAAAGGTTGG
CTCCCATCTTCCAAAGTCGAAGACTTCTCCAATATTAACCAACGATTAAG
TGAAGCGTTATAGGGCCAATCATATTCCAAAAAATTAGATTCGTTCCACG
TTGGTAATTTAATCAAACTCGTTTGTAATTTAGCTGTTTCCTCATTGAAT
GAATAAACAGTGATGACATGATCATCTGTGCTGTCCCGTTGCCTGGTATA
TGAAGTATAATATCTTCCAGAGCTGTCAAAGCCATGCATGGTTCGGTATA
CGGGCGGGTCAAGACCAGTCCACGTTTCTTTTGTCTCGACACATTCGGTG
AGATGAGGTGGTAAGAATGCTTGCCGTGGGTAAGCCAACATTCCTATTTT
GATATTTGAGGATTATTTTAGCTCGTTTGCATTTTTATTCCTGAAAAAAC
AACAGATTATACAATGTAAGGTGTGATCTACACGTTTTTTTCTATAAGAA
CAAACTGTATAAGAACATGAAGCTTCGATGGCTAAAGTGTTAAGAACAAG
TTAAGAACATTTTTAAGGCTTTGGCGACTTTTAAACACCCGATTTCTTAG
GAAAACGGACAAAAATACTCAGAAAATGGTGAAAATAAGAAAATAGGAAC
ATAAGAACATGTTAAGAACATTTTTAGGCTTAAAATCAAAAAAAGTTAAG
AACATCGGAACATCCGAAGGCTTAAGAAATGTTGGATGTTCTCATAAAAA
AGAAAACATGTATGGACTGGAGTGTAATGGGTTATTATTTAGGAACCATG
ACAATAAAAAACGGTTTTACTTTTTTGGCCTATTCGACAGAAGAATTAGC
CTGTACCAACCTGAATGTCAACAGGCGATTTTGTCTCTTCTGTAAAGAAA
AGTTTGGTATAGGCAACAGAAGAATGTATTTTAGAGAATTGAGACGGGTT
ACGCAAATGAAGACAGACTACACGTTTTTTTTTATTAGAACACCTAAAAT
TTGGCTGAGCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAAT
GTTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCCTAAGTTTGGTTAAAACTGCTTGAAAAGAGGAAAAAATTGTAGT
TTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTCTTACGATGTTC
TTAATATTTCGACGAATTTCAGCCTAAATGTTCTTATAAACTGGGTTCTA
ATAAAGAAAAAAACGTGCAACATTTCATTGCCTAAAGACTGACACGACAG
GCAAGACTTGCAAGGTAGAAAAGTGCGTAAAATATCGATGAATTTCAAAA
TTCCTAGTCATGATTGATACCACGAGATAGAAAATGATATTAAGAGATAA
ACAAATTATGATAAGATATACAGTCATTGAAAACGGAGAGTCCTTTTTTT
ATGAATTATAAAATTGTATAAAATGGTTATTTTAAAAGTGTATAAATATA
ATGAAATTGATAAATAATTTTTTGCAAAATCCGAAATTTAAATATAAGAT
GCGGAATGATAAGATACTTTCATAATAGAATTTGATTGATTCAAAGGACC
GCATAAAAAAGATTTTTTCTTTGCAGTGAACTTTCTAAAATTGAATTGAT
CCCTTTTTATCTGGCTGGGGAGATAAGATAAGCATTAATTTTTATGATGC
GTTCTATCAAATAACTTGATAAATTCTATTATAAGTTAAAAGGTCAAAAG
TGAGCCATAAAAAAATCTTCAACCTAAGATAGAGTGGTCTACCAGTTGCG
ATAAACATCATAAAAGAGATGAAAATTTTCACAAAGTCCAGAACTGAAAA
TTGGATTTAAGTCTCAGACACACAAATAATGGCACCTGTTTGTGTAATTT
ACAGACCAGAATAGGTTTGTAGGCTAAAGTGAATTTTTTTTTCAGTTTTT
TTACTCTGCTTAAAGCTTTCAACAATACATCAATGAATTAATTTTTGCTG
AAGAATTTGATCACTGACACTTGATCGATGATCGAGGAATGATTTTTTAT
AAATTCTTTTCCCTAACTTTCTCTCAGATTTTTGATGGACGCTACACAAT
TTTCGCAGTGACTACCAGGTGTGCCAGAAATATATTACCCTCTTGGATTT
GATATTGCAGACAGTAGAATAGAGATTTTTCAAAGATTTTTTTCGGAATC
ATTCAGAAGAAACTTAAAATTTGGTGTATTAATTTTTAATTTTACTTCAT
TGGTTCAAAAGTTATGTTTAAAAACTTAAAATGTCAATTCTAAAAAATCG
AAAAATGAGAGTATCAAATTGATTGTAATGAAAAGAGACACAAAACGATA
TTATGCATCAGGAAATGTATTTCCATTATGTGAAAGCACTTACCTTATCG
GCCCTTTTTACGCCCGCTCTAATTTAAAGCCGGTCGCTTTTAAGTCAGCC
CTTATTACGCCACAGCCTAATTTTGAGCTTACGCCAATTAGGGTCGTAAA
TAACGTCAGAATTTGTTAGAATGGCATCCCTGTAAAAACATTCCATCATC
TGTGAATCGAGATGAGCTGCAACAGTTTTGTGCAACTTTTGCAACTTCAA
GTTTAGTGAACTTTCACCTTTCTCAACGATATGATGCACACACAGGAAAA
CTTTCGGAAACTCTTGGAAAGATGTTGAAAGATTTGTGGGGGTTCAAGTA
TTCTACATCTTGTTTATGCCCAAGGGAAAAACAGAAGTAAAAAAAAAACA
ATTAGAGATAAAGAAAACATAGAATGTTACAAGGAGCAAGACTTTGTACT
TTAAAATGTTTTGGCCTGCAAGTCCTTTCTCTCATAAATCGATACCACTG
TTTTTAGCCTTTTGACAATTTTTTAAAATTAATATTTTAGGTTTTTGAAC
ATAACTTTTGAACCAATGAAGCAAAATTAAAAATTAATACACCAAATTTT
AAGTTAGGCTTTCTCTGAACGATTCCGAAACAATCTTTGAAAAATAATGT
TACTGCCTGCAATATCAAGTCAGCGAGGGTAACTTATTTCTGGCACACTC
GGTATATACAAAAAAATTGTCAGAAACTATCTTTTATTTTAAATTTAGTC
TAAATTTTGCGTCATTTCAAGCGAGTCCAAGATATTTACTGAGACATTTC
GGTAGATTGTCCTTCAAGAATTCGTCATGAAAACTTTTCAAGCAAGCCAT
TCGTGCCATATGTTTCAAAGACATCTTTAAATGATCAAAAGGAGAATTCA
CTTTTACGAAGCGAAGATAAGGGCTTGATAAATACATCAAACTTGCTGTT
GGGTCAAATAGCGCTATTTCCGCCATATGCCAATTAATTGAAAAACCGTA
AATTTCTTTTCTACAATCGTACCGGATTATCAGTTCTCCTGATTTGAAGT
CGTACAAACAAACCGAATGAAATGGTTGGGAGCCTGCTTCTGAAGTGACT
TGAAGGCCTTCGACAAAAAACTGATCAAAACATCCAACGACTTTGTGTAA
AATAATATCGTTCCGTCCATGACACAAATTAATTCTTTTCAATGGGATGA
CCTCATTTTTATTGTCGACTTGAAAGACCTTTATGCTTTTTGCCTTTGTG
TCAACGTTCTCCAAGAAAATATAGAAGATTGAGTTTGACAAATGATAAAA
ATCATTAAAATTCTGAACACCTTCCCTTTCAGAGATTGTGACTTCATAAT
CCATAAGGCGATTTCCCTCAAAATCAAAACCATATATCATACCATATTCA
TAATTATGAAGGTAAATTCTCTTAGAATTCATATCTAGCGATACACCAGA
ATTATGGAACGCAAACGTTCCGAGTTCGAAGTCCATTTCAGTGCAACTGC
TCAACACAACACGTTGGAGATGTGAAAGTCTTTTTTCGCCTATTAAAACG
ATGTCAGCCACAAAATTGTAACCACCAGGAGAAACAAGCACCATTAAGAC
GTAACCATATTCTTTGGTTTTCTCCTGCCAAACACTATGGATGTAATCAA
AAGCTTTATATGATTCCAGTTCAATGACAGAATCCTCCGTTTCTTGAAAA
GTGGTCGATACAATACTTCCTGGAAGAGCACCTAAAAGGTGTTTCAAGCT
TCCACTGTGTAATATTAAAGGCTGGCTCCCATCTTCCAAAGTCGAAGGCT
TCTCAAACACAAACCAACGATTAAACAAAGGATCATACGGCAAGTCATAT
TCATTATAGCGCAAGTCCCATGATGGTAATTGAATTAAACTCACTTGTAG
TTTATCTGTTTCCTCATTGAATGAATAGACGCTTATGATATCGTCACCTG
TTTTATCCTCAGCTCCGCAATATACGGTGTAATATTTCCCAGAGCTGTCG
AAGCCACGTATACTTATTTGCTGGGGGCGGTCAAGACCAGCCCAGATTTC
TTTTGTCTCAACACATTCGGTGAGATGAGGTGGTAAGAACGATTGACGTG
GGTAAGCCAACATTTCTTTTTTGAAAATACTCTGAACATTATTTCATAAT
TATTATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044954XLOC_044954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072414-exon-scaffold_77-1575043694:193736..195030TCONS_00072414-exon-scaffold_77-1575043694:193736..195030Clytia hemisphaericaexon
TCONS_00072414-exon-scaffold_77-1575043694:188672..189060TCONS_00072414-exon-scaffold_77-1575043694:188672..189060Clytia hemisphaericaexon
TCONS_00072414-exon-scaffold_77-1510915933:193736..195030TCONS_00072414-exon-scaffold_77-1510915933:193736..195030Clytia hemisphaericaexon
TCONS_00072414-exon-scaffold_77-1510915933:188672..189060TCONS_00072414-exon-scaffold_77-1510915933:188672..189060Clytia hemisphaericaexon
TCONS_00072414-exon-scaffold_77-1491911889:193736..195030TCONS_00072414-exon-scaffold_77-1491911889:193736..195030Clytia hemisphaericaexon
TCONS_00072414-exon-scaffold_77-1491911889:188672..189060TCONS_00072414-exon-scaffold_77-1491911889:188672..189060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:188672..195030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60275	3.32732	12.0431	10.1951	1.12037	0.674391	0.506547	0.152094	1.4362	0.714234	1.25514	1.11318	0.668156	0.0292704	0	0.765192	1.54225	1.71203	0.351806	0.113061	1.2339	0.454087	2.93984	3.70226	0.428836	1.06368	0.985611	0.54095	1.63992	0.88999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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