TCONS_00072405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072405
Unique NameTCONS_00072405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072405 ID=TCONS_00072405|Name=TCONS_00072405|organism=Clytia hemisphaerica|type=transcript|length=1932bp
AATGACTACTTTCCAGACTTTCTTGAATCGTGATACAGCGGTATACAGAA
CAACTGTATTGGAACGAAAGTCAAACTCACATAATCATGAACTGTAATCT
TAATTAAAATATAAAACCTCGTGGTTTTGAGGCCGTCAAAAATGAGAGAT
TCCCTCAGAGTTTCAAACTATATTAAAGAAGAACTAAACTGACATCAAAT
GTCAAACAAAAGCTcatcattattatttttatttccttTCTTTCGTCATA
Atatatttacaatatttttcatttagaatttattttaaaagattcctaaa
aaaaagtttccatcTATCATtacagtaaaaaataaaatgatcagAAGGTT
Ttgtatcaaaaaatttccacctgacagcaaaaaaaattgtcagttattct
ttcctgaaataaaaatgaaactataattttcatttagttaaaaaaatttg
aagttcgTAACGAACAAattaaactgttttttttttttgcacatttGCAA
AATGAATTTAACCCTTCGTTCGATTTAAACATAACTTGTATCAAAGTCAA
TCCAAAAAACTCGTAATGCTTTCACATTCTACCATCAGCAATGTttcatc
atcaatttttcagCGTTTTACTAGGGGCTATTTTCGTCGCCAACTTTCTC
TACTCTTTCTTTCGTAGGTGCCGGAAAGATTATCCTGAAAGGATCACGTC
ATCCATGTCTAGAAGTTCAAGATGGGATAGGATTTATTCCCAATGATGTC
ACACTCACTAAGGGTgagtattatttcttttgtTGCCAAGATATTTAACG
TTTATGATCAAATCTGTTGTCAAACCCCTCCCTTTCGGTTATTGATGATT
TCTAAAGAACTTCTTGTACGTACGGCGGATATAAAATAAACTTTGTTTTC
CCAATAAACACGCTTATTGTTTTGTATTGAAGGTTTCAACAAAAACCGAA
CTATTTGGGAAGCCTTTTGAAACTACAGGTGACtccctctaattcgatct
tatagggaccaaaaatttcattcaaattagagaaagaatCGAATTACAGT
GAGtaattttaacatatttttcaGTTGAGGGGACCAATCAtatagttcga
attagagaaagattcgaataatagaagttcgaattagagagagttgactg
tattttGATGGTCCTTCCATTATCTTTGATGTGATTTCAATTAGGACATT
TGTCATCTTCAACATCTTTTCGTATATGAAGCAATTATTCCCAGACTTTA
GCAAAGCGGGAatctttaaagatatttattaaCTTTCTTTGTGGCCTCTT
ATTTTCGTTGCTTTTAATTCCAATAAGCACTTGTTTTACGTTGTGGTACC
CACGTGTTCAAAGTCTTTAAGGTGTTCTCTGCTATTATAGTTAAATCTTT
CAGTGCTAAACCTTTTGGTAGACCTTGTTTAATCAACCAATACTGACTCT
TAGTTGCGGCCAACTGCCATTCTTCTTTGTAACTCTCACAAGTTGATTGA
AGCCATGCTAGAGCTAATGACGTGGCCCATATACTCTGATGGATAGAGTT
AGTTCTTTCAAACTCATCTTTACGAAGTAAACTTTTGAAGGGGCAACTTT
CGATTAGATTAACCATGGTAACTGATAGGATTGCAGCTAGCTGTTCGTTA
AGCTTCCAACTACCATCAGGGAACATGTGAAATAGCAACTTTGCATAATT
GGTGAAACTGTCGAGGGGTATTTTGACGGAATCGTGGGTAGAGCTCTTCC
GTCTACCGACCACCACACAACCATCGGTCGGCTGATATCTGCTCATGCTA
TAAAGAGAACaaagtttaaagaaatttaCTGCTGTATATTTGGTTTTGAG
TTTGGAGGGAAAGAGCTTTTTCCAAATTCACCTCGACTTCTTTTCAAAGT
CGGGTTAAGTCGAGTTGAGTTGAATCGAGTCG
Run BLAST on NCBI

transcript from alignment at scaffold_77:71090..73021-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072405 ID=TCONS_00072405|Name=TCONS_00072405|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at scaffold_77:71090..73021- (Clytia hemisphaerica)
AATGACTACTTTCCAGACTTTCTTGAATCGTGATACAGCGGTATACAGAA CAACTGTATTGGAACGAAAGTCAAACTCACATAATCATGAACTGTAATCT TAATTAAAATATAAAACCTCGTGGTTTTGAGGCCGTCAAAAATGAGAGAT TCCCTCAGAGTTTCAAACTATATTAAAGAAGAACTAAACTGACATCAAAT GTCAAACAAAAGCTCATCATTATTATTTTTATTTCCTTTCTTTCGTCATA ATATATTTACAATATTTTTCATTTAGAATTTATTTTAAAAGATTCCTAAA AAAAAGTTTCCATCTATCATTACAGTAAAAAATAAAATGATCAGAAGGTT TTGTATCAAAAAATTTCCACCTGACAGCAAAAAAAATTGTCAGTTATTCT TTCCTGAAATAAAAATGAAACTATAATTTTCATTTAGTTAAAAAAATTTG AAGTTCGTAACGAACAAATTAAACTGTTTTTTTTTTTTGCACATTTGCAA AATGAATTTAACCCTTCGTTCGATTTAAACATAACTTGTATCAAAGTCAA TCCAAAAAACTCGTAATGCTTTCACATTCTACCATCAGCAATGTTTCATC ATCAATTTTTCAGCGTTTTACTAGGGGCTATTTTCGTCGCCAACTTTCTC TACTCTTTCTTTCGTAGGTGCCGGAAAGATTATCCTGAAAGGATCACGTC ATCCATGTCTAGAAGTTCAAGATGGGATAGGATTTATTCCCAATGATGTC ACACTCACTAAGGGTGAGTATTATTTCTTTTGTTGCCAAGATATTTAACG TTTATGATCAAATCTGTTGTCAAACCCCTCCCTTTCGGTTATTGATGATT TCTAAAGAACTTCTTGTACGTACGGCGGATATAAAATAAACTTTGTTTTC CCAATAAACACGCTTATTGTTTTGTATTGAAGGTTTCAACAAAAACCGAA CTATTTGGGAAGCCTTTTGAAACTACAGGTGACTCCCTCTAATTCGATCT TATAGGGACCAAAAATTTCATTCAAATTAGAGAAAGAATCGAATTACAGT GAGTAATTTTAACATATTTTTCAGTTGAGGGGACCAATCATATAGTTCGA ATTAGAGAAAGATTCGAATAATAGAAGTTCGAATTAGAGAGAGTTGACTG TATTTTGATGGTCCTTCCATTATCTTTGATGTGATTTCAATTAGGACATT TGTCATCTTCAACATCTTTTCGTATATGAAGCAATTATTCCCAGACTTTA GCAAAGCGGGAATCTTTAAAGATATTTATTAACTTTCTTTGTGGCCTCTT ATTTTCGTTGCTTTTAATTCCAATAAGCACTTGTTTTACGTTGTGGTACC CACGTGTTCAAAGTCTTTAAGGTGTTCTCTGCTATTATAGTTAAATCTTT CAGTGCTAAACCTTTTGGTAGACCTTGTTTAATCAACCAATACTGACTCT TAGTTGCGGCCAACTGCCATTCTTCTTTGTAACTCTCACAAGTTGATTGA AGCCATGCTAGAGCTAATGACGTGGCCCATATACTCTGATGGATAGAGTT AGTTCTTTCAAACTCATCTTTACGAAGTAAACTTTTGAAGGGGCAACTTT CGATTAGATTAACCATGGTAACTGATAGGATTGCAGCTAGCTGTTCGTTA AGCTTCCAACTACCATCAGGGAACATGTGAAATAGCAACTTTGCATAATT GGTGAAACTGTCGAGGGGTATTTTGACGGAATCGTGGGTAGAGCTCTTCC GTCTACCGACCACCACACAACCATCGGTCGGCTGATATCTGCTCATGCTA TAAAGAGAACAAAGTTTAAAGAAATTTACTGCTGTATATTTGGTTTTGAG TTTGGAGGGAAAGAGCTTTTTCCAAATTCACCTCGACTTCTTTTCAAAGT CGGGTTAAGTCGAGTTGAGTTGAATCGAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044951XLOC_044951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072405-exon-scaffold_77-1575043694:71090..73021TCONS_00072405-exon-scaffold_77-1575043694:71090..73021Clytia hemisphaericaexon
TCONS_00072405-exon-scaffold_77-1510915933:71090..73021TCONS_00072405-exon-scaffold_77-1510915933:71090..73021Clytia hemisphaericaexon
TCONS_00072405-exon-scaffold_77-1491911889:71090..73021TCONS_00072405-exon-scaffold_77-1491911889:71090..73021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:71090..73021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361833 0.229937 0.291115 0.213714 0.0555354 0.156356 7.27093 6.15255 2.08579 2.65328 1.81604 1.50946 1.41983 1.48149 0.494009 0.34787 1.49511 2.02306 2.79527 2.69884 3.00092 2.1513 0.892468 1.35925 1.26588 2.43121 3.99122 3.27941 0.0960621 0.0241425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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