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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072405 ID=TCONS_00072405|Name=TCONS_00072405|organism=Clytia hemisphaerica|type=transcript|length=1932bp
AATGACTACTTTCCAGACTTTCTTGAATCGTGATACAGCGGTATACAGAA
CAACTGTATTGGAACGAAAGTCAAACTCACATAATCATGAACTGTAATCT
TAATTAAAATATAAAACCTCGTGGTTTTGAGGCCGTCAAAAATGAGAGAT
TCCCTCAGAGTTTCAAACTATATTAAAGAAGAACTAAACTGACATCAAAT
GTCAAACAAAAGCTcatcattattatttttatttccttTCTTTCGTCATA
Atatatttacaatatttttcatttagaatttattttaaaagattcctaaa
aaaaagtttccatcTATCATtacagtaaaaaataaaatgatcagAAGGTT
Ttgtatcaaaaaatttccacctgacagcaaaaaaaattgtcagttattct
ttcctgaaataaaaatgaaactataattttcatttagttaaaaaaatttg
aagttcgTAACGAACAAattaaactgttttttttttttgcacatttGCAA
AATGAATTTAACCCTTCGTTCGATTTAAACATAACTTGTATCAAAGTCAA
TCCAAAAAACTCGTAATGCTTTCACATTCTACCATCAGCAATGTttcatc
atcaatttttcagCGTTTTACTAGGGGCTATTTTCGTCGCCAACTTTCTC
TACTCTTTCTTTCGTAGGTGCCGGAAAGATTATCCTGAAAGGATCACGTC
ATCCATGTCTAGAAGTTCAAGATGGGATAGGATTTATTCCCAATGATGTC
ACACTCACTAAGGGTgagtattatttcttttgtTGCCAAGATATTTAACG
TTTATGATCAAATCTGTTGTCAAACCCCTCCCTTTCGGTTATTGATGATT
TCTAAAGAACTTCTTGTACGTACGGCGGATATAAAATAAACTTTGTTTTC
CCAATAAACACGCTTATTGTTTTGTATTGAAGGTTTCAACAAAAACCGAA
CTATTTGGGAAGCCTTTTGAAACTACAGGTGACtccctctaattcgatct
tatagggaccaaaaatttcattcaaattagagaaagaatCGAATTACAGT
GAGtaattttaacatatttttcaGTTGAGGGGACCAATCAtatagttcga
attagagaaagattcgaataatagaagttcgaattagagagagttgactg
tattttGATGGTCCTTCCATTATCTTTGATGTGATTTCAATTAGGACATT
TGTCATCTTCAACATCTTTTCGTATATGAAGCAATTATTCCCAGACTTTA
GCAAAGCGGGAatctttaaagatatttattaaCTTTCTTTGTGGCCTCTT
ATTTTCGTTGCTTTTAATTCCAATAAGCACTTGTTTTACGTTGTGGTACC
CACGTGTTCAAAGTCTTTAAGGTGTTCTCTGCTATTATAGTTAAATCTTT
CAGTGCTAAACCTTTTGGTAGACCTTGTTTAATCAACCAATACTGACTCT
TAGTTGCGGCCAACTGCCATTCTTCTTTGTAACTCTCACAAGTTGATTGA
AGCCATGCTAGAGCTAATGACGTGGCCCATATACTCTGATGGATAGAGTT
AGTTCTTTCAAACTCATCTTTACGAAGTAAACTTTTGAAGGGGCAACTTT
CGATTAGATTAACCATGGTAACTGATAGGATTGCAGCTAGCTGTTCGTTA
AGCTTCCAACTACCATCAGGGAACATGTGAAATAGCAACTTTGCATAATT
GGTGAAACTGTCGAGGGGTATTTTGACGGAATCGTGGGTAGAGCTCTTCC
GTCTACCGACCACCACACAACCATCGGTCGGCTGATATCTGCTCATGCTA
TAAAGAGAACaaagtttaaagaaatttaCTGCTGTATATTTGGTTTTGAG
TTTGGAGGGAAAGAGCTTTTTCCAAATTCACCTCGACTTCTTTTCAAAGT
CGGGTTAAGTCGAGTTGAGTTGAATCGAGTCG Run BLAST on NCBI transcript from alignment at scaffold_77:71090..73021- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072405 ID=TCONS_00072405|Name=TCONS_00072405|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at scaffold_77:71090..73021- (Clytia hemisphaerica)
AATGACTACTTTCCAGACTTTCTTGAATCGTGATACAGCGGTATACAGAA
CAACTGTATTGGAACGAAAGTCAAACTCACATAATCATGAACTGTAATCT
TAATTAAAATATAAAACCTCGTGGTTTTGAGGCCGTCAAAAATGAGAGAT
TCCCTCAGAGTTTCAAACTATATTAAAGAAGAACTAAACTGACATCAAAT
GTCAAACAAAAGCTCATCATTATTATTTTTATTTCCTTTCTTTCGTCATA
ATATATTTACAATATTTTTCATTTAGAATTTATTTTAAAAGATTCCTAAA
AAAAAGTTTCCATCTATCATTACAGTAAAAAATAAAATGATCAGAAGGTT
TTGTATCAAAAAATTTCCACCTGACAGCAAAAAAAATTGTCAGTTATTCT
TTCCTGAAATAAAAATGAAACTATAATTTTCATTTAGTTAAAAAAATTTG
AAGTTCGTAACGAACAAATTAAACTGTTTTTTTTTTTTGCACATTTGCAA
AATGAATTTAACCCTTCGTTCGATTTAAACATAACTTGTATCAAAGTCAA
TCCAAAAAACTCGTAATGCTTTCACATTCTACCATCAGCAATGTTTCATC
ATCAATTTTTCAGCGTTTTACTAGGGGCTATTTTCGTCGCCAACTTTCTC
TACTCTTTCTTTCGTAGGTGCCGGAAAGATTATCCTGAAAGGATCACGTC
ATCCATGTCTAGAAGTTCAAGATGGGATAGGATTTATTCCCAATGATGTC
ACACTCACTAAGGGTGAGTATTATTTCTTTTGTTGCCAAGATATTTAACG
TTTATGATCAAATCTGTTGTCAAACCCCTCCCTTTCGGTTATTGATGATT
TCTAAAGAACTTCTTGTACGTACGGCGGATATAAAATAAACTTTGTTTTC
CCAATAAACACGCTTATTGTTTTGTATTGAAGGTTTCAACAAAAACCGAA
CTATTTGGGAAGCCTTTTGAAACTACAGGTGACTCCCTCTAATTCGATCT
TATAGGGACCAAAAATTTCATTCAAATTAGAGAAAGAATCGAATTACAGT
GAGTAATTTTAACATATTTTTCAGTTGAGGGGACCAATCATATAGTTCGA
ATTAGAGAAAGATTCGAATAATAGAAGTTCGAATTAGAGAGAGTTGACTG
TATTTTGATGGTCCTTCCATTATCTTTGATGTGATTTCAATTAGGACATT
TGTCATCTTCAACATCTTTTCGTATATGAAGCAATTATTCCCAGACTTTA
GCAAAGCGGGAATCTTTAAAGATATTTATTAACTTTCTTTGTGGCCTCTT
ATTTTCGTTGCTTTTAATTCCAATAAGCACTTGTTTTACGTTGTGGTACC
CACGTGTTCAAAGTCTTTAAGGTGTTCTCTGCTATTATAGTTAAATCTTT
CAGTGCTAAACCTTTTGGTAGACCTTGTTTAATCAACCAATACTGACTCT
TAGTTGCGGCCAACTGCCATTCTTCTTTGTAACTCTCACAAGTTGATTGA
AGCCATGCTAGAGCTAATGACGTGGCCCATATACTCTGATGGATAGAGTT
AGTTCTTTCAAACTCATCTTTACGAAGTAAACTTTTGAAGGGGCAACTTT
CGATTAGATTAACCATGGTAACTGATAGGATTGCAGCTAGCTGTTCGTTA
AGCTTCCAACTACCATCAGGGAACATGTGAAATAGCAACTTTGCATAATT
GGTGAAACTGTCGAGGGGTATTTTGACGGAATCGTGGGTAGAGCTCTTCC
GTCTACCGACCACCACACAACCATCGGTCGGCTGATATCTGCTCATGCTA
TAAAGAGAACAAAGTTTAAAGAAATTTACTGCTGTATATTTGGTTTTGAG
TTTGGAGGGAAAGAGCTTTTTCCAAATTCACCTCGACTTCTTTTCAAAGT
CGGGTTAAGTCGAGTTGAGTTGAATCGAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072405-exon-scaffold_77-1575043694:71090..73021 | TCONS_00072405-exon-scaffold_77-1575043694:71090..73021 | Clytia hemisphaerica | exon |
| TCONS_00072405-exon-scaffold_77-1510915933:71090..73021 | TCONS_00072405-exon-scaffold_77-1510915933:71090..73021 | Clytia hemisphaerica | exon |
| TCONS_00072405-exon-scaffold_77-1491911889:71090..73021 | TCONS_00072405-exon-scaffold_77-1491911889:71090..73021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:71090..73021 - |
Blast
The following BLAST results are available for this feature:
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