TCONS_00072384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072384
Unique NameTCONS_00072384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072384 ID=TCONS_00072384|Name=TCONS_00072384|organism=Clytia hemisphaerica|type=transcript|length=484bp
ATCGTTTTGAACCTACTGACAGCAATTGTATCTTTGATATTCACTCGACA
GCAAGAATCATAAACAACTTTTTCATTTATATACTTCAGACAATTTTcga
ccaaaaatttttgaatttcattccTTTACATATCGTATGATTGGTTCTAA
AATCGAGTGGTAATACATTTTGAAcgttttttctgacttttctgAAATCA
AATCGCAAAGCTTGAGCAACCAGCTTTTTTAATTCGTGATTTTGCAACAC
GGAATATAAAAAAGACCAAGGCGTAAGAATGTTGGATGGTAAACTAAATT
TAACCATGCTGTTCTTCTGAAAATCtttgtatattttatattttctataa
ATTATTTTCTATAAATTCATTTTTGTTAATTATTGAATTAATATAATATT
GCCCTCAGTCCTCGCAAgttcggtcgttacttgacctcgggcaatatttc
tcggTGCAGCcatcactaaccggtcattattgta
Run BLAST on NCBI

transcript from alignment at scaffold_77:505879..506774+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072384 ID=TCONS_00072384|Name=TCONS_00072384|organism=Clytia hemisphaerica|type=transcript|length=896bp|location=Sequence derived from alignment at scaffold_77:505879..506774+ (Clytia hemisphaerica)
ATCGTTTTGAACCTACTGACAGCAATTGTATCTTTGATATTCACTCGACA GCAAGAATCATAAACAACTTTTTCATTTATATGCTTCAGACAAtctttta ccaaaaatatttggatttcgTTTCTCTATACTTAGTATGGTTGGACATTT ATCATTGCTTGGTTGGCTATCGTTTTGAACCTTCTAACTGCAATCGTATC TTTAATATTCACTCGAAAGCAAAAATAATAAACGACTTTTTCATTTATAT ACTTCAGACAATCTATTACCAAAGATTTTTGGATTCCATCGTTTTAAATC TACTTACATTTTATAACATTTTATATGCTTCAGACAATTTATTACAGGAA ATATCTGGATTTCGTTTTTCTATACATCTTATGGCTGGACATTTATTATT GCTTGGCTAGCTATCGTTTTGAACCTACTGACTGCAATTGTATCTTTGAT ATTTACTCGACAGCAAGAATCGTAAACGACTTTTACATTTATATACTTCA GACAATTTTcgaccaaaaatttttgaatttcattccTTTACATATCGTAT GATTGGTTCTAAAATCGAGTGGTAATACATTTTGAAcgttttttctgact tttctgAAATCAAATCGCAAAGCTTGAGCAACCAGCTTTTTTAATTCGTG ATTTTGCAACACGGAATATAAAAAAGACCAAGGCGTAAGAATGTTGGATG GTAAACTAAATTTAACCATGCTGTTCTTCTGAAAATCtttgtatatttta tattttctataaATTATTTTCTATAAATTCATTTTTGTTAATTATTGAAT TAATATAATATTGCCCTCAGTCCTCGCAAgttcggtcgttacttgacctc gggcaatatttctcggTGCAGCcatcactaaccggtcattattgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044945XLOC_044945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072384-exon-scaffold_77-1491911889:505879..505952TCONS_00072384-exon-scaffold_77-1491911889:505879..505952Clytia hemisphaericaexon
TCONS_00072384-exon-scaffold_77-1510915933:505879..505952TCONS_00072384-exon-scaffold_77-1510915933:505879..505952Clytia hemisphaericaexon
TCONS_00072384-exon-scaffold_77-1575043694:505879..505952TCONS_00072384-exon-scaffold_77-1575043694:505879..505952Clytia hemisphaericaexon
TCONS_00072384-exon-scaffold_77-1491911889:506365..506774TCONS_00072384-exon-scaffold_77-1491911889:506365..506774Clytia hemisphaericaexon
TCONS_00072384-exon-scaffold_77-1510915933:506365..506774TCONS_00072384-exon-scaffold_77-1510915933:506365..506774Clytia hemisphaericaexon
TCONS_00072384-exon-scaffold_77-1575043694:506365..506774TCONS_00072384-exon-scaffold_77-1575043694:506365..506774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:505879..506774 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.869236 0.432434 0 0 0 0 0 0 0 0 0 0.405268 1.86061 0.56678 0.0732561 0 0 0 2.89136 1.81679 0.835659 0.753175 0.195007 0 0 0.441019 0.353797 0 0.55995 0.153892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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