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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072383 ID=TCONS_00072383|Name=TCONS_00072383|organism=Clytia hemisphaerica|type=transcript|length=928bp
ATTTGAATGGAAAACATGTttaaaatagagaaaaaagCATTCATCTTGAT
CCTTCTCTGCGCCGTCTCTTTCATTTTTACCGCTCTTGGTACTGGTGGGA
ACGCATGGGTTCGACAAGAATTGAAAAGACAAGATGGTAGCCAAGTCACG
GTACGTGGCTTATGGAAATATTGTTCAACAACGTGTCTTAGTTATACTGT
TACATCTAGTTACTTGATGGCTTGTCGTGCTTTGACAGTCATTTCATCCA
TTTGTTCTTTCGTGGCCCTATGTTTGTCCGTGGTTGGTCACGCCTCACAT
ATCAAACCGTACTTGCTACCCGTAGCTACAATGGGATCGGtTGTGTCAAT
GTTCATCGCAATTCTTGTTTACATCAGCAAAAATATCTGGATTTCATTTC
TTTATACTTCGTATGGTTGGACCTTTATCATTGCTTGGTTAGCTATCGTT
TTGAACCTTCTAACTGCAATCGTATCTTTAATATTCACTCGACAACAAGA
ATCATAAACGACTTTTACATTTATATACTTCAGACAATTTTcgaccaaaa
atttttgaatttcattccTTTACATATCGTATGATTGGTTCTAAAATCGA
GTGGTAATACATTTTGAAcgttttttctgacttttctgAAATCAAATCGC
AAAGCTTGAGCAACCAGCTTTTTTAATTCGTGATTTTGCAACACGGAATA
TAAAAAAGACCAAGGCGTAAGAATGTTGGATGGTAAACTAAATTTAACCA
TGCTGTTCTTCTGAAAATCtttgtatattttatattttctataaATTATT
TTCTATAAATTCATTTTTGTTAATTATTGAATTAATATAATATTGCCCTC
AGTCCTCGCAAgttcggtcgttacttgacctcgggcaatatttctcggTG
CAGCcatcactaaccggtcattattgta Run BLAST on NCBI protein sequence of TCONS_00072383-protein >TCONS_00072383-protein ID=TCONS_00072383-protein|Name=TCONS_00072383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MENMFKIEKKAFILILLCAVSFIFTALGTGGNAWVRQELKRQDGSQVTVR
GLWKYCSTTCLSYTVTSSYLMACRALTVISSICSFVALCLSVVGHASHIK
PYLLPVATMGSVVSMFIAILVYISKNIWISFLYTSYGWTFIIAWLAIVLN
LLTAIVSLIFTRQQES Run BLAST on NCBI transcript from alignment at scaffold_77:503210..506774+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072383 ID=TCONS_00072383|Name=TCONS_00072383|organism=Clytia hemisphaerica|type=transcript|length=3565bp|location=Sequence derived from alignment at scaffold_77:503210..506774+ (Clytia hemisphaerica)
ATTTGAATGGAAAACATGTttaaaatagagaaaaaagCATTCATCTTGAT
CCTTCTCTGCGCCGTCTCTTTCATTTTTACCGCTCTTGGTACTGGTGGGA
ACGCATGGGTTCGACAAGAATTGAAAAGACAAGATGGTAGCCAAGTCACG
GTACGTGGCTTATGGAAATATTGTTCAACAACGTGTCTTAGTTATACTGT
TACATCTAGTAAGTTCGagtttgtttttgctttttcgGTGCcgtcgtttt
gcataagattcccTTTCCCGCACTAAGTTTCTCCTCGTATCTCCGAGATT
TTTCCACTATTTTCCCCGGGAAAGCCGGTacgagattggaaagggttttt
ttctgaagatacggaaaatcttgtgtttactcacgAAACAGTCtaacttt
tcttttcaaatatccgtattcaaatatcacttttctagcggaaaagACCA
GAGCTCCGGGTAGTTGAAATACgagcttcggaaagttaggcTATTTCGTA
AGCAAAACGACGGCACGGCCTTTTTATTACTTTCAAATagatattttcat
aaattacatcacgATTAAAATATTGCTATGAGGAATACTTCTATGAGGAT
TTTACGAGAAGTTTACCCTTTTTATAAAGATCAGTGATGGAAGTCAATTT
TTGCATCTggatcatagatttataaagccagaagggctagatatcgtgct
tttgctgaaaagtgtgccgtggctaggtaggaaattctacctaagtcacg
tgacattacaatagaatttcagcgcttgaccaaccaagcttcgcgggttt
tcgaaaacaatagcagcaatattttttgcgatattcacttttttttgctt
ggaagagcttaaagcactccatctagcccctcgggctttataaatctatg
gtctgGATGTGAAGGCATTCTGTTTACATACTTTCAGGTTACTTGATGGC
TTGTCGTGCTTTGACAGTCATTTCATCCATTTGTTCTTTCGTGGCCCTAT
GTTTGTCCGTGGTTGGTCACGCCTCACATATCAAACCGTACTTGCTACCC
GTAGCTACAATGGGATCGGGTACGTAAATACTTAGTATTACAGTCAATGA
GCTTTATATAGATCCATGAGGTAGTTTATCAATCCAGGCCAAGAAAAATC
TTTAGATTGGAGTTTTTTAGAAAGTGGTAGTAATGGTAGTACTCAAtagt
ggtgtaaatgcatcgagagcgctagatctactttcccccTTCATTGCTTC
CTtacgggtaccactttcaaaaaaactccaatcaaaggtGGCGGATTTGC
ATTGTGCAGGGGTTTATGAAGGTCAGCGATTACGGCACGTTCATCGGATT
AATTCTGCGACATATTACGTCATCTTTTAACAAAATATTGGATTTACATC
AAAAGATTTTAGAACAACTTAATTTTACAAAAACATAGATTTTTAGCATC
GCCTTTATGCTAAAAGACATTATAAGAGTATTAAACCTTAAACAGTGACT
AAtctgaatatattttttatggctagggacaattcttttgttttcaagtc
agaaaattcagtggtgaTGGAAAACATAGCAAAGTACTTTAAAATGAGGA
TtggtttgtttgattattttcagtggagacaaaaattggaggctAATTTC
CCATCGGGGACGATAATTTgtacaatttttccagtgggaagggttcttct
tgggtctgtgagaaggggatgtccTGCTAAACTTGATTCAATCCTCTTTG
ACCGTCCATAAGTGTTTGGTACCTGAAGGGGCAACTTGTCCTATTTTTGT
ACATTTCTTTTCTTATGAGAGTTAGGGGCAACTCATACtaatacacccct
tctcacagatctgctgggaacccttcccactggaaaaattggccaaaata
tcgtctccggtgggaaattatcctccaatgtttttccccactgaaaatga
tcaaataaacaaatccttcATGCAAAAtaatatgctatttttcccatccc
cactgaactttttgacttgaaacaaaagaatttaaattcaGCCAAAAAGA
TATGTAAATAAAAATGCCCATCTcagtttcagttcgttattttcatcccc
atcaggcgtagtggtatagtggttatcgtgcttgacttctgtccaggagg
cccgagttcgataccGACTGTGGCACTACAATTCAATTGGTAAGTGAATG
CTccttcacccgggtcaacccatgccatatgaggggaattgggtacaaTA
ACTCTGATATAAGAGTATGAGTAGATattccagacattgtggtgtgcttG
TGAGACACTTCTAtctattttcatccccactggatggAAAAATTCTACCG
GGGCTTCTAATCTTTTTGTACattctctttttatttttccatagtTGTGT
CAATGTTCATCGCAATTCTTGTTTACATCAGCAAAAATATCTGGATTTCA
TTTCTTTATACTTCGTATGGTTGGACCTTTATCATTGCTTGGTTAGCTAT
CGTTTTGAACCTTCTAACTGCAATCGTATCTTTAATATTCACTCGACAAC
AAGAATCATAAACGACTTTTACATTTACATACTTCAGTCAATTTTTTTAC
TGGATATATTTGGATCATATTCCTCTACACATCTTATGGTTGGACCTTTA
TCATAGCTTTTGGTTAGCTATCGTTTTGAACCTACTGACAGCAATTGTAT
CTTTGATATTCACTCGACAGCAAGAATCATAAACAACTTTTTCATTTATA
TGCTTCAGACAAtcttttaccaaaaatatttggatttcgTTTCTCTATAC
TTAGTATGGTTGGACATTTATCATTGCTTGGTTGGCTATCGTTTTGAACC
TTCTAACTGCAATCGTATCTTTAATATTCACTCGAAAGCAAAAATAATAA
ACGACTTTTTCATTTATATACTTCAGACAATCTATTACCAAAGATTTTTG
GATTCCATCGTTTTAAATCTACTTACATTTTATAACATTTTATATGCTTC
AGACAATTTATTACAGGAAATATCTGGATTTCGTTTTTCTATACATCTTA
TGGCTGGACATTTATTATTGCTTGGCTAGCTATCGTTTTGAACCTACTGA
CTGCAATTGTATCTTTGATATTTACTCGACAGCAAGAATCGTAAACGACT
TTTACATTTATATACTTCAGACAATTTTcgaccaaaaatttttgaatttc
attccTTTACATATCGTATGATTGGTTCTAAAATCGAGTGGTAATACATT
TTGAAcgttttttctgacttttctgAAATCAAATCGCAAAGCTTGAGCAA
CCAGCTTTTTTAATTCGTGATTTTGCAACACGGAATATAAAAAAGACCAA
GGCGTAAGAATGTTGGATGGTAAACTAAATTTAACCATGCTGTTCTTCTG
AAAATCtttgtatattttatattttctataaATTATTTTCTATAAATTCA
TTTTTGTTAATTATTGAATTAATATAATATTGCCCTCAGTCCTCGCAAgt
tcggtcgttacttgacctcgggcaatatttctcggTGCAGCcatcactaa
ccggtcattattgta Coding sequence (CDS) from alignment at scaffold_77:503210..506774+ >TCONS_00072383 ID=TCONS_00072383|Name=TCONS_00072383|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_77:503210..506774+ (Clytia hemisphaerica)
ATGGAAAACATGTttaaaatagagaaaaaagCATTCATCTTGATCCTTCT
CTGCGCCGTCTCTTTCATTTTTACCGCTCTTGGTACTGGTGGGAACGCAT
GGGTTCGACAAGAATTGAAAAGACAAGATGGTAGCCAAGTCACGGTACGT
GGCTTATGGAAATATTGTTCAACAACGTGTCTTAGTTATACTGTTACATC
TAGTTACTTGATGGCTTGTCGTGCTTTGACAGTCATTTCATCCATTTGTT
CTTTCGTGGCCCTATGTTTGTCCGTGGTTGGTCACGCCTCACATATCAAA
CCGTACTTGCTACCCGTAGCTACAATGGGATCGGtTGTGTCAATGTTCAT
CGCAATTCTTGTTTACATCAGCAAAAATATCTGGATTTCATTTCTTTATA
CTTCGTATGGTTGGACCTTTATCATTGCTTGGTTAGCTATCGTTTTGAAC
CTTCTAACTGCAATCGTATCTTTAATATTCACTCGACAACAAGAATCATA
AATGGAAAACATGTttaaaatagagaaaaaagCATTCATCTTGATCCTTC
TCTGCGCCGTCTCTTTCATTTTTACCGCTCTTGGTACTGGTGGGAACGCA
TGGGTTCGACAAGAATTGAAAAGACAAGATGGTAGCCAAGTCACGGTACG
TGGCTTATGGAAATATTGTTCAACAACGTGTCTTAGTTATACTGTTACAT
CTAGTTACTTGATGGCTTGTCGTGCTTTGACAGTCATTTCATCCATTTGT
TCTTTCGTGGCCCTATGTTTGTCCGTGGTTGGTCACGCCTCACATATCAA
ACCGTACTTGCTACCCGTAGCTACAATGGGATCGGtTGTGTCAATGTTCA
TCGCAATTCTTGTTTACATCAGCAAAAATATCTGGATTTCATTTCTTTAT
ACTTCGTATGGTTGGACCTTTATCATTGCTTGGTTAGCTATCGTTTTGAA
CCTTCTAACTGCAATCGTATCTTTAATATTCACTCGACAACAAGAATCAT
AAATGGAAAACATGTttaaaatagagaaaaaagCATTCATCTTGATCCTT
CTCTGCGCCGTCTCTTTCATTTTTACCGCTCTTGGTACTGGTGGGAACGC
ATGGGTTCGACAAGAATTGAAAAGACAAGATGGTAGCCAAGTCACGGTAC
GTGGCTTATGGAAATATTGTTCAACAACGTGTCTTAGTTATACTGTTACA
TCTAGTTACTTGATGGCTTGTCGTGCTTTGACAGTCATTTCATCCATTTG
TTCTTTCGTGGCCCTATGTTTGTCCGTGGTTGGTCACGCCTCACATATCA
AACCGTACTTGCTACCCGTAGCTACAATGGGATCGGtTGTGTCAATGTTC
ATCGCAATTCTTGTTTACATCAGCAAAAATATCTGGATTTCATTTCTTTA
TACTTCGTATGGTTGGACCTTTATCATTGCTTGGTTAGCTATCGTTTTGA
ACCTTCTAACTGCAATCGTATCTTTAATATTCACTCGACAACAAGAATCA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072383-exon-scaffold_77-1491911889:503210..503417 | TCONS_00072383-exon-scaffold_77-1491911889:503210..503417 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1510915933:503210..503417 | TCONS_00072383-exon-scaffold_77-1510915933:503210..503417 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1575043694:503210..503417 | TCONS_00072383-exon-scaffold_77-1575043694:503210..503417 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1491911889:504147..504278 | TCONS_00072383-exon-scaffold_77-1491911889:504147..504278 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1510915933:504147..504278 | TCONS_00072383-exon-scaffold_77-1510915933:504147..504278 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1575043694:504147..504278 | TCONS_00072383-exon-scaffold_77-1575043694:504147..504278 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1491911889:505604..505781 | TCONS_00072383-exon-scaffold_77-1491911889:505604..505781 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1510915933:505604..505781 | TCONS_00072383-exon-scaffold_77-1510915933:505604..505781 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1575043694:505604..505781 | TCONS_00072383-exon-scaffold_77-1575043694:505604..505781 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1491911889:506365..506774 | TCONS_00072383-exon-scaffold_77-1491911889:506365..506774 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1510915933:506365..506774 | TCONS_00072383-exon-scaffold_77-1510915933:506365..506774 | Clytia hemisphaerica | exon |
| TCONS_00072383-exon-scaffold_77-1575043694:506365..506774 | TCONS_00072383-exon-scaffold_77-1575043694:506365..506774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:503210..506774 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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