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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072377 ID=TCONS_00072377|Name=TCONS_00072377|organism=Clytia hemisphaerica|type=transcript|length=1279bp
CACTGTCTTTTTACACACTTAACAACAGTTTCAAATAATTAATATTTACA
ATTATTtcatataatttcaaaatgtatGTACAGTTTAGAATAACGAGTTC
GTTCTTCTAGTAATCCATTTTATTATTTCTATAAATTTATCACCACTTGT
TAAGAAACAACTAGTCGCCGGTATTCTTATCCATAAACACTTTGGCGATA
CGCAAACACTGATGCGCGTTGAAAGTCCACTGAATTGGTCTGCTCCTACA
AAGTCTTGTTAAGCTGCTATCATCCGGAGGGGGGGGGATACTTGATCAAA
ATGGGTACCGAGTATGTGTGAGCcatcagggtcccttttttacacTCTCG
AAAgtctcaaaattacaaaatatcaaaaattgactCCTTCAAAGGTTAAT
AAAATCTGTtaattttgagccaaaaatttaaaaaatagtcTCTCGAAGAG
TCGATTTAACGAACTTTGCCTTTGACATTTTTGCCCGTCGCATTGGAAAC
CTATTACACCCCCTCCCGGGGGCTGTTACCATTACAATCAAATAGGTGAG
ATTTATTTTCTGAGAAGCATTTCAGTAATTTCATCGTTGGATATGTACAA
TATGTACAGTGTTTGTTTTATCTTGATTGATGGGCTCAGATGGTTTGTGA
TTGGCTGATTCTTGCATAGATGGTTTTTGATTGGCTGATTCTTGCATAGA
TGGTTTGTGATTGGCTGATTCTTGCACAGGTGGTTTTTGATTGGCTGATT
CTTGCTCAGATGGTTTGTGATTGGCTGATTCTTGCATAGATGGTTTTTGA
TTGGCTGATTCTTGCATAGATGGTTTGTGATTGGCTGATTCTTGCACAGG
TGGTTTTTGATTGGCTGATTCTTGCTCAGATGGTTTGTGATTGGCTGATT
CTCGCTCAGATGGTTTTTGATTGGCTGATTCTTGCACAGATGGTTTGTGA
TTGGCTGATTCCACCTCAGATTGTTTGTGATTGGCTGATTCTTGCACAGA
TGCTTTTTGATTGGCTGAATCTTTTTCGTTAATTTTATCGTTCGATTCCT
TTTTAGGCTTTTCTGGTCCTTGGTTGTCTTTATCGggatttttctttttc
cccGATTCGTCAGAATTTTTTCCCGATTCtgtatctttttcttttaaatt
ggtTTCATGTTTtagttcttcattttcttttttttcgttctttttctCGG
GTTCGTTTTCTTTGTAATGGGGAATCTTCTCATGAGAATTGTTCCCTGGA
GAATCCTTCTTGTTTGTGGAATTCTCTTT Run BLAST on NCBI transcript from alignment at scaffold_77:445238..446636+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072377 ID=TCONS_00072377|Name=TCONS_00072377|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at scaffold_77:445238..446636+ (Clytia hemisphaerica)
CACTGTCTTTTTACACACTTAACAACAGTTTCAAATAATTAATATTTACA
ATTATTtcatataatttcaaaatgtatGTACAGTTTAGAATAACGAGTTC
GTTCTTCTAGTAATCCATTTTATTATTTCTATAAATTTATCACCACTTGT
TAAGAAACAACTAGTCGCCGGTATTCTTATCCATAAACACTTTGGCGATA
CGCAAACACTGATGCGCGTTGAAAGTCCACTGAATTGGTCTGCTCCTACA
AAGTCTTGTTAAGCTGCTATCATCCGGAGGGGGGGGGATACTTGATCAAA
ATGGGTACCGAGTATGTGTGAGCcatcagggtcccttttttacacTCTCG
AAAgtctcaaaattacaaaatatcaaaaattgactCCTTCAAAGGTTAAT
AAAATCTGTtaattttgagccaaaaatttaaaaaatagtcTCTCGAAGAG
TCGATTTAACGAACTTTGCCTTTGACATTTTTGCCCGTCGCATTGGAAAC
CTATTACACCCCCTCCCGGGGGCTGTTACCATTACAATCAAATAGGTGAG
ATTTATTTTCTGAGAAGCATTTCAGTAATTTCATCGTTGGATATGTACAA
TATGTACAGTGTTTGTTTTATCTTGATTGATGGGCTCAGATGGTTTGTGA
TTGGCTGATTCTTGCATAGATGGTTTTTGATTGGCTGATTCTTGCATAGA
TGGTTTGTGATTGGCTGATTCTTGCACAGGTGGTTTTTGATTGGCTGATT
CTTGCTCAGATGGTTTGTGATTGGCTGATTCTTGCATAGATGGTTTTTGA
TTGGCTGATTCTTGCATAGATGGTTTGTGATTGGCTGATTCTTGCACAGG
TGGTTTTTGATTGGCTGATTCTTGCTCAGATGGTTTGTGATTGGCTGATT
CTCGCTCAGATGGTTTTTGATTGGCTGATTCTTGCACAGATGGTTTGTGA
TTGGCTGATTCCACCTCAGATTGTTTGTGATTGGCTGATTCTTGCACAGG
TGGTTTTTGATTGGCTGATTCTTGCACAGATGGTTTGTGATTGGCTGATT
CCACCTCAGATTGTTTGTGATTGGCTGATTCTTGCACAGATGGTTTTTGA
TCGATCGATTCCGCCTCAGATGCTTTTTGATTGGCTGAATCTTTTTCGTT
AATTTTATCGTTCGATTCCTTTTTAGGCTTTTCTGGTCCTTGGTTGTCTT
TATCGggatttttctttttccccGATTCGTCAGAATTTTTTCCCGATTCt
gtatctttttcttttaaattggtTTCATGTTTtagttcttcattttcttt
tttttcgttctttttctCGGGTTCGTTTTCTTTGTAATGGGGAATCTTCT
CATGAGAATTGTTCCCTGGAGAATCCTTCTTGTTTGTGGAATTCTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072377-exon-scaffold_77-1491911889:445238..446236 | TCONS_00072377-exon-scaffold_77-1491911889:445238..446236 | Clytia hemisphaerica | exon |
| TCONS_00072377-exon-scaffold_77-1510915933:445238..446236 | TCONS_00072377-exon-scaffold_77-1510915933:445238..446236 | Clytia hemisphaerica | exon |
| TCONS_00072377-exon-scaffold_77-1575043694:445238..446236 | TCONS_00072377-exon-scaffold_77-1575043694:445238..446236 | Clytia hemisphaerica | exon |
| TCONS_00072377-exon-scaffold_77-1491911889:446357..446636 | TCONS_00072377-exon-scaffold_77-1491911889:446357..446636 | Clytia hemisphaerica | exon |
| TCONS_00072377-exon-scaffold_77-1510915933:446357..446636 | TCONS_00072377-exon-scaffold_77-1510915933:446357..446636 | Clytia hemisphaerica | exon |
| TCONS_00072377-exon-scaffold_77-1575043694:446357..446636 | TCONS_00072377-exon-scaffold_77-1575043694:446357..446636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:445238..446636 + |
Blast
The following BLAST results are available for this feature:
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