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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072376 ID=TCONS_00072376|Name=TCONS_00072376|organism=Clytia hemisphaerica|type=transcript|length=1206bp
CGTTTTATTTGGTTACTAAAGATGGCATCACGTTTTCaacaaaatatatt
tgatttaaaaCCCATGTCGATTGATCCAACGAATTGCAGTACAAAGCAAT
CACTTTACCAGCAAATCCAAAAAAGTTCACAAAAAGTATTGAacgaacaa
aagaaaaagttcaatTTGGGCAATGGACAATTTTTCAACGACCCAATCAA
AGTTGCTGATCAGCTTCTCGAACGTGAGTACGCTGATTCAGCACTTTTCG
ACTCTACCCTCCACGAAGCCATTTTTATTCCACCTCTGTTCGAATCCGAC
CAATATGCGAAAACGGATTCATCGGTGCACATGCTCGATTTCGAAGACGG
CAAAAAATCTTCAATACAGAAATCATTGGATAATTTGAAGTTAAATAACC
CTAACCATTGGTTTACCAAGGAGCTGCAATCTTTCCATGATCTCCAACAA
TCCAATTCTAGCGACGTAATCAACGCCACGGAATTCACAAATTGGATTCG
CAATATCAAACTCAAATATTTACTGATCGAAGAGTTAGGAACGGACCAAG
TGAACCTTCCCGCATCAACATCTGACAACCAAACCTTCAAACAAGCTTGC
ATCCAAAAGCTGACAACGATGCAAGGATCTCAACTCAATGACGCTCTAGA
GGTTAACAACTGTAAGAAAGGAATCGAAAAGCTGGTCAAACAAAATCCAC
CAAAGGATCCCATCATGAGATGGTATTTCGGATTCCAACCTTCTGAAATC
GGTGAAAAAGCAGAGCATTCTTTTTTTGAACAACTTTATTCCCTCAAAGA
TGACGAAGTGCTCCAAGACACTGTTATTCTAAATTCTCTTGACTTTCGTA
CTAATGTGAACAACCGCATGCAACAAGAATTTGACGTCCTTTTGTTCTCT
TGGTCCAGAAAATTGATCATCGGTATCGAAATCAAACGAACACTGACCTC
GACAAGAGCGTTTGAACAACTCGACAGATATCACGAGTTGATTGAAGAAA
GGTTGAGTGATCAACTCGGATCAGGTTGGACCTTTTATCCAGCTCTTTGC
GTTGATTACGATACTGAACTTTGTGGAACTCAACATTACATCAATCTGGA
CACTGATTTTAAAGGCTGGCTCGCAAACATCTTCACAAAATACCCTATTG
TACCAACCTTCATCCCCTACGTTCCCCCAGTCAATCAACTTAAGGATGTT
TTACGA Run BLAST on NCBI protein sequence of TCONS_00072376-protein >TCONS_00072376-protein ID=TCONS_00072376-protein|Name=TCONS_00072376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
RFIWLLKMASRFQQNIFDLKPMSIDPTNCSTKQSLYQQIQKSSQKVLNEQ
KKKFNLGNGQFFNDPIKVADQLLEREYADSALFDSTLHEAIFIPPLFESD
QYAKTDSSVHMLDFEDGKKSSIQKSLDNLKLNNPNHWFTKELQSFHDLQQ
SNSSDVINATEFTNWIRNIKLKYLLIEELGTDQVNLPASTSDNQTFKQAC
IQKLTTMQGSQLNDALEVNNCKKGIEKLVKQNPPKDPIMRWYFGFQPSEI
GEKAEHSFFEQLYSLKDDEVLQDTVILNSLDFRTNVNNRMQQEFDVLLFS
WSRKLIIGIEIKRTLTSTRAFEQLDRYHELIEERLSDQLGSGWTFYPALC
VDYDTELCGTQHYINLDTDFKGWLANIFTKYPIVPTFIPYVPPVNQLKDV
LR Run BLAST on NCBI transcript from alignment at scaffold_77:417940..421666+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072376 ID=TCONS_00072376|Name=TCONS_00072376|organism=Clytia hemisphaerica|type=transcript|length=3727bp|location=Sequence derived from alignment at scaffold_77:417940..421666+ (Clytia hemisphaerica)
CGTTTTATTTGGTTACTAAAGATGGCATCACGTTTTCaacaaaatatatt
tgatttaaaaCCCATGTCGATTGATCCAACGAATTGCAGTACAAAGCAAT
CACTTTACCAGCAAATCCAAAAAAGTTCACAAAAAGTATTGAacgaacaa
aagaaaaagttcaatTTGGGCAATGGACAATTTTTCAACGACCCAATCAA
AGTTGCTGATCAGCTTCTCGAACGTGAGTACGCTGATTCAGCACTTTTCG
ACTCTACCCTCCACGAAGCCATTTTTATTCCACCTCTGTTCGAATCCGAC
CAATATGCGAAAACGGATTCATCGGTGCACATGCTCGATTTCGAAGACGG
CAAAAAATCTTCAATACAGAAATCATTGGATAATTTGAAGTTAAATAACC
CTAACCATTGGTTTACCAAGGAGCTGCAATCTTTCCATGATCTCCAACAA
TCCAATTCTAGCGACGTAATCAACGCCACGGAATTCACAAATTGGATTCG
CAATATCAAACTCAAATATTTACTGATCGAAGAGTTAGGAACGGACCAAG
TGAACCTTCCCGCATCAACATCTGACAACCAAACCTTCAAACAAGCTTGC
ATCCAAAAGCTGACAACGATGCAAGGATCTCAACTCAATGACGCTCTAGA
GGTACGTTTCTCATATGTGTATATATTCATTCTTTAAATGATTAACGTCT
CATTTTCGTAGTCTGTACCGTACAACAACTGTTACTTACtttaaatttcg
cgagcgaaAATATcgtgaaattttctttccgagtcagagttttgaaaaat
ttcgtgtggATTTCATTTCGCGAATAATCCTGAAATCAGCTGAAAAAAGG
TGAAATTCGTATCCCGGTAAGTAGTACTATCCGGGGGGGGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGGGGGAGAGGTAAAAAGTGGTCCTACTTATTAACTGCGATTCAG
AGGCACATCTCAAAGGTAAGAACCAAAGAAAAGTGGCACTGCCTTAATAC
AATTATATAACTACTCGATTTTATAACGCCAATTGGCTACCCTCGCGTTA
ATTATAACCGTTTAATACAATTTGAGCCGGGGTAGTTTTCAAAAGCCCTG
TCTTTCACGTTAAATAAATGTCGCACTCATTTTTCCTGTGTTAAGTACTA
TTATGCTGTTCAGGGTTTCGGTAGCGTGGGAAGATCTATCCCACGACACA
GAAACCCTGAAAGCAGACGGGTAATCTATACCAATCTAATTACCAGTAGT
AggtttgttaaaaaataaaaaaataaaaatttgaagtcagtgcTGCTTAA
GGAAGAGCTGAGAGCAGATTGGGCTGCTTGACAATGAATAGAGAGGGATT
GCTTGAGCATAGAAGGTGTAATCAGAAcaatgttttgaagaaaagaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGGGATTCAAAGACTGTTATGTGC
CTGAGTGAAGCCTCCAGAGGAGAGTGAGAAgattgagaaaaagaaaaaga
gatgtTGAAAGAAATAGGTGTTTTGAAAGCAGTGGGGAAAATGAGATGGT
GGGTAAAAGAACATAGAAATATTCTTACATTGAGATGAAGTTTGCGTGAT
CTTGACAGTAGTCTTGAGTGCAGGATGCAAAGagcgaaaaaagatttttt
ttttccttttttttgaaatttggcgcTGTTGTAAACAACTTGATGTAACC
ATGGAGACTACATTTCGATTGGTTCCTGTTTAGAGATTCTAACCAATCGG
GTGAGAGGGGCGTGTGTGGCGGAAATGTGATGGGCGGGTCAAACGTGTGT
GACGGAGGTAGATACTAGCCAATGTTGAAAATAGTACCAGTTTAGACAGA
GGCAAATTAGAAAATGAAGTAGGAAGAGAGGTCTTGAGGTGAAAGGAGTG
GTGAGAGATAGGGGAAGAAGGAGGAAGatagagttttttttttaatttaa
aattttgagataGAAAAATAGCATCCTCTGGGGGTCGAACACGGGTCATT
GCGGCCCGAGGTGGCAGTGCTAGCAAAAGGCTATTGAAGCTGAACTGATC
ttaagaattgaaaaaaaacattgagaGAGTAGTTTCTATTACGGAGTATG
AAGGAGATAAAGGTGACAGGGCTATGACGGTGTAATCAGAAAGCAATTAT
CTCTCCAATGTGAAAAAAGAGAGGAAGTGGTGCCAGTCNGGTGTAATCAG
AAAGCAATTATCTCTCCAATGTGAAAAAAGAAAGGAAGTGGTGCCAGTCA
GTGAGCACGTTGGAAAAACCAATATGGCGAATCTTGagttagaaattgaa
aaaataagaaattgggAAAAAGAATGGGAAGAGTAAGTATACGAAAAAGG
AGATCCACAAGGAAGTTGACAAAACTGATCTGGAAGCATTGTAGCTTGTA
GCTTCTTTGGAATTATAGTCCAATTTGAGCTGGGGTAATTTCAAAAGCCC
TGTCTTTCACGTTAAATAAATGTCGCACTCATTTTTCCTGCGTTAAGTAC
TTGATAAGTTATAAAAATGTAATGATGTATTTAGGCGCCAACTTCTTATC
CGTAGCCCACATATCCGCAATATGAAATAGTTATCGAGGTTTCACTTTGC
TTATTCTCTTATGATTTTTCAGGTTAACAACTGTAAGAAAGGAATCGAAA
AGCTGGTCAAACAAAATCCACCAAAGGATCCCATCATGAGATGGTATTTC
GGATTCCAACCTTCTGAAATCGGTGAAAAAGCAGAGCATTCTTTTTTTGA
ACAACTTTATTCCCTCAAAGATGACGAAGTGCTCCAAGACACTGTTATTC
TAAATTCTCTTGACTTTCGTACTAATGTGAACAACCGCATGCAACAAGAA
TTTGACGTCCTTTTGTTCTCTTGGTCCAGAAAATTGATCATCGGTATCGA
AATCAAACGAACACTGACCTCGACAAGAGCGTTTGAACAACTCGACAGAT
ATCACGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGG
ACCTTTTATCCAGCTCTTTGCGTTGATTACGATACTGAACTTTGTGGAAC
TCAACATTACATCAATCTGGACACTGATTTTAAAGGCTGGCTCGCAAACA
TCTTCACAAAATACCCTATTGTACCAACCTTCATCCCCTACGTTCCCCCA
GTCAATCAACTTAAGGATGTTTTACGA Coding sequence (CDS) from alignment at scaffold_77:417940..421666+ >TCONS_00072376 ID=TCONS_00072376|Name=TCONS_00072376|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_77:417940..421666+ (Clytia hemisphaerica)
CGTTTTATTTGGTTACTAAAGATGGCATCACGTTTTCaacaaaatatatt
tgatttaaaaCCCATGTCGATTGATCCAACGAATTGCAGTACAAAGCAAT
CACTTTACCAGCAAATCCAAAAAAGTTCACAAAAAGTATTGAacgaacaa
aagaaaaagttcaatTTGGGCAATGGACAATTTTTCAACGACCCAATCAA
AGTTGCTGATCAGCTTCTCGAACGTGAGTACGCTGATTCAGCACTTTTCG
ACTCTACCCTCCACGAAGCCATTTTTATTCCACCTCTGTTCGAATCCGAC
CAATATGCGAAAACGGATTCATCGGTGCACATGCTCGATTTCGAAGACGG
CAAAAAATCTTCAATACAGAAATCATTGGATAATTTGAAGTTAAATAACC
CTAACCATTGGTTTACCAAGGAGCTGCAATCTTTCCATGATCTCCAACAA
TCCAATTCTAGCGACGTAATCAACGCCACGGAATTCACAAATTGGATTCG
CAATATCAAACTCAAATATTTACTGATCGAAGAGTTAGGAACGGACCAAG
TGAACCTTCCCGCATCAACATCTGACAACCAAACCTTCAAACAAGCTTGC
ATCCAAAAGCTGACAACGATGCAAGGATCTCAACTCAATGACGCTCTAGA
GGTTAACAACTGTAAGAAAGGAATCGAAAAGCTGGTCAAACAAAATCCAC
CAAAGGATCCCATCATGAGATGGTATTTCGGATTCCAACCTTCTGAAATC
GGTGAAAAAGCAGAGCATTCTTTTTTTGAACAACTTTATTCCCTCAAAGA
TGACGAAGTGCTCCAAGACACTGTTATTCTAAATTCTCTTGACTTTCGTA
CTAATGTGAACAACCGCATGCAACAAGAATTTGACGTCCTTTTGTTCTCT
TGGTCCAGAAAATTGATCATCGGTATCGAAATCAAACGAACACTGACCTC
GACAAGAGCGTTTGAACAACTCGACAGATATCACGAGTTGATTGAAGAAA
GGTTGAGTGATCAACTCGGATCAGGTTGGACCTTTTATCCAGCTCTTTGC
GTTGATTACGATACTGAACTTTGTGGAACTCAACATTACATCAATCTGGA
CACTGATTTTAAAGGCTGGCTCGCAAACATCTTCACAAAATACCCTATTG
TACCAACCTTCATCCCCTACGTTCCCCCAGTCAATCAACTTAAGGATGTT
TTACGACGTTTTATTTGGTTACTAAAGATGGCATCACGTTTTCaacaaaa
tatatttgatttaaaaCCCATGTCGATTGATCCAACGAATTGCAGTACAA
AGCAATCACTTTACCAGCAAATCCAAAAAAGTTCACAAAAAGTATTGAac
gaacaaaagaaaaagttcaatTTGGGCAATGGACAATTTTTCAACGACCC
AATCAAAGTTGCTGATCAGCTTCTCGAACGTGAGTACGCTGATTCAGCAC
TTTTCGACTCTACCCTCCACGAAGCCATTTTTATTCCACCTCTGTTCGAA
TCCGACCAATATGCGAAAACGGATTCATCGGTGCACATGCTCGATTTCGA
AGACGGCAAAAAATCTTCAATACAGAAATCATTGGATAATTTGAAGTTAA
ATAACCCTAACCATTGGTTTACCAAGGAGCTGCAATCTTTCCATGATCTC
CAACAATCCAATTCTAGCGACGTAATCAACGCCACGGAATTCACAAATTG
GATTCGCAATATCAAACTCAAATATTTACTGATCGAAGAGTTAGGAACGG
ACCAAGTGAACCTTCCCGCATCAACATCTGACAACCAAACCTTCAAACAA
GCTTGCATCCAAAAGCTGACAACGATGCAAGGATCTCAACTCAATGACGC
TCTAGAGGTTAACAACTGTAAGAAAGGAATCGAAAAGCTGGTCAAACAAA
ATCCACCAAAGGATCCCATCATGAGATGGTATTTCGGATTCCAACCTTCT
GAAATCGGTGAAAAAGCAGAGCATTCTTTTTTTGAACAACTTTATTCCCT
CAAAGATGACGAAGTGCTCCAAGACACTGTTATTCTAAATTCTCTTGACT
TTCGTACTAATGTGAACAACCGCATGCAACAAGAATTTGACGTCCTTTTG
TTCTCTTGGTCCAGAAAATTGATCATCGGTATCGAAATCAAACGAACACT
GACCTCGACAAGAGCGTTTGAACAACTCGACAGATATCACGAGTTGATTG
AAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACCTTTTATCCAGCT
CTTTGCGTTGATTACGATACTGAACTTTGTGGAACTCAACATTACATCAA
TCTGGACACTGATTTTAAAGGCTGGCTCGCAAACATCTTCACAAAATACC
CTATTGTACCAACCTTCATCCCCTACGTTCCCCCAGTCAATCAACTTAAG
GATGTTTTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072376-exon-scaffold_77-1491911889:417940..418590 | TCONS_00072376-exon-scaffold_77-1491911889:417940..418590 | Clytia hemisphaerica | exon |
| TCONS_00072376-exon-scaffold_77-1510915933:417940..418590 | TCONS_00072376-exon-scaffold_77-1510915933:417940..418590 | Clytia hemisphaerica | exon |
| TCONS_00072376-exon-scaffold_77-1575043694:417940..418590 | TCONS_00072376-exon-scaffold_77-1575043694:417940..418590 | Clytia hemisphaerica | exon |
| TCONS_00072376-exon-scaffold_77-1491911889:421112..421666 | TCONS_00072376-exon-scaffold_77-1491911889:421112..421666 | Clytia hemisphaerica | exon |
| TCONS_00072376-exon-scaffold_77-1510915933:421112..421666 | TCONS_00072376-exon-scaffold_77-1510915933:421112..421666 | Clytia hemisphaerica | exon |
| TCONS_00072376-exon-scaffold_77-1575043694:421112..421666 | TCONS_00072376-exon-scaffold_77-1575043694:421112..421666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:417940..421666 + |
Blast
The following BLAST results are available for this feature:
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