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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072374 ID=TCONS_00072374|Name=TCONS_00072374|organism=Clytia hemisphaerica|type=transcript|length=1893bpRun BLAST on NCBI transcript from alignment at scaffold_77:398624..436793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072374 ID=TCONS_00072374|Name=TCONS_00072374|organism=Clytia hemisphaerica|type=transcript|length=38170bp|location=Sequence derived from alignment at scaffold_77:398624..436793+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072374 vs. Swiss-Prot (Human)
Match: NPHP3 (Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.446e-45 Identity = 175/586 (29.86%), Postives = 276/586 (47.10%), Query Frame = 1
Query: 166 NHLYRNVLCTVLQYMMSDAEMQTISSRLLNCKSLKDLLSVVL-TILERRHN---KRLFSLVLHWVYFSQNGLTLAELIELGGNDPD-----LLPILFDLESVEILVSINGLVKFVHSVCKETV-FRHLSIPKNIDDASTRTIRQNLVDLFEKKLTLGCVSYRVADELPAQLAALKDKESLFKCLSSIFVFVHLYRRGRLTTLVNYWKILSRDTSAVKDIYCSALQSILDESKDESSFNEQITMLYDLLGDFYKDLGLFSIAQXXXXXXXXXXXXXXXPDDILLTRSYFLLARLFTQWKKYQTAEEYLKQALECNDVSTEGASSSIATILEFLAMLCQHQEKGKDADIYRKNAIGLRDTHFFQH-ELVSIKLSLVECTQLA-VTLSESASSHV-TLEETTGWLVSISFIYFHLKQYSEAAEVLQQAL----RYLTKDNNGDMQNYQAVIDIQCKLSFVYTTMGQNDKAESMLERALNIYFTLNLLEDPNLATVINSLVKLYRSQKRMDSLERLHRSHMKAMERYYGVDDIRVAHVINELAVHLSKMNKFEEAIELYEQAMNVYINQLGFQDVHVSEVLSNLAHLFSE 1872
N LY + ++ + I + C+ L +VL +I E N K L +L V S NG++ +EL+EL P+ L ++ L + +L GL++F H ETV +L P T + RQ L++ F +L+ V++R ADELP K+ L CL ++FV +LY+RG L++YW+ + +D SA+ Y +L+ + E + + + LY+ LG F KDLGL S A L++SLE++E L+PD + +S LA ++ QWKK+ AE+ KQALE ++ + A LE LA L Q Q K + A+ +RK + + + L L QL +TL + + TL E + +Y+ A + L+++L R L D+ Q+ L+ + Q DKAE + ERAL+I + P+LA + L LY+ ++D L+ ++ ++ +G VA + LAV S+M K EA+ LYE+A+ +Y + LG V E L NLA L E
Sbjct: 711 NALYVTLFGKMIARAGRAGNLDKILHQCFQCQDTLSLYRLVLHSIRESMANDVDKELMKQILCLVNVSHNGVSESELMELY---PEMSWTFLTSLIHSLYKMCLLTYGCGLLRFQHLQAWETVRLEYLEGP-----TVTSSYRQKLINYFTLQLSQDRVTWRSADELPWLFQQQGSKQKLHDCLLNLFVSQNLYKRGHFAELLSYWQFVGKDKSAMATEYFDSLKQYEKNCEGEDNMS-CLADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNE-------LGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLN-------NLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYE 1273 The following BLAST results are available for this feature:
BLAST of TCONS_00072374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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