TCONS_00072362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072362
Unique NameTCONS_00072362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072362 ID=TCONS_00072362|Name=TCONS_00072362|organism=Clytia hemisphaerica|type=transcript|length=2615bp
TTTTGCTTGTTCTACGTTTTCAATTTCAAGAGTATTtggtttttcttctt
ctttatcaCCAGAAGGGCGTTGTCCGACAGCACCGAAATCACCACCCTCC
GGGCGGGAATCGTTCAAGGTGAGCGAAGAGCGTGACAAGAAATCAGACAA
AAGGGTGGAAGACGCGATGCGTGGTAATTCTTCGGGTGAATTTACTTCTT
GTGATGTCTGTGTAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCCTTC
NGTGTGATGTCTGTGAAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCC
TTCATCACGTCTCTTGATGGAGTCTCTTCTTCAATGTCCTGGAACTCTGT
GAAACATGTCAATGGAGTGTTGACATCGATGCTGGGAAAGTGGACCAATT
CTCTGGAAGGAGTCAATACTTTCTCTGGACATCCTGGGAAGTTGTATCGT
TCAGGGATAACGCCATATTCTCTTAGGTTGTAGAAAGTTGTTTCAGGTGA
GAAGGATTTTCTTTCCGGTCTTTTGACTGGAGATTCGTCCAGACATGGTT
CGTCAGGTTGGCATGATGAGACGGTTTGACATTTGAATTGTATCTCTGGT
AAAGAAGTAGGTTCCATGATGTGTCTACTTAAAGCCGCTGCTTCATCCAA
ATTTTTCTCAATGCTACCAGGTTGTCGATGAAACTGGTTGTCATATTCAT
TCATTTGGCAACGCATTTGTTCGATTTCTCGACGAATAGTATTCAACTGT
TCAGAACCTGTTTCGTGTTGTTGTTCCTCGCGAACCTTTCTGTTCTCCAG
GAGGATTTTATCCAACCGGCTGAGTGTTTGTTCTTCATGCACTGATGAGT
CTGCTGACAACGAATCTTTATCGTCCCCCATGTTcacttctttttcttca
ttttggtCATCTTCATAGTTTGCCATTATCGAATCCAAATCTTGAAGTTC
TGCTTCCAGGTTCTGAATATGCTCTTCGTTGTTTTTTAAATGTTCGCGAA
ACTTTTGTAGACCATCATTCTCATTTGATTGAGATTTATCTTTCGGTTTC
TTCTTTTCTACTTTCACTGGAAGGGCTAAATCTTTCCCAACAATCAGACA
CATTGGTTGGATGTCCTTAGGCTTTTCATCCTTACTCGCGAGTTCCGAGG
ACTGGGTAACAGGCTTTTTTGAAGGTGGTGCGTACTCTTCACAAAGCTGC
TCACGCAAGTTGTCTTTATGTGATTGTAAAACATGTTCGTTATCTTTCGC
AGAAAGCAATATCTTATTTTTGAATTCTTCCCACTCtttgttttgaactt
tttcTGTATTTTGTCTTTCATTCATTGTCGTCTTTTTGGTTTGACTGTTT
GTTGTTTTCGCTTTCGATTCCGTCGGAGTGGGACTAGATATTGGTTTTCT
AGATTTCTCGGTTAGTTCATTTGGAGCTGGTGCCTTTGGTATGTTTTCTT
GACTATTCGGTGACATAAATGATGGGTGGTCTCTTTGCCGTTTGACATTT
TGTCTGGTGGCTGCATTTGTTTGGGGTAATAAAGTTTGTGGTAACGTTCT
TCTCTGCACCCTTTGTTGCGGTGACACAGCTGTTGTTTGTTGTGGTGCGG
TAGGATTTTCTTGCGTTTGAACAAGTGGTCTTTTCAATAGCGTTTTAGCC
GGCTGACTGTTGACTGATGGACTTTGAGGAAGTGATGTTGGCGAAGTTTG
TGGAAAAGGCTGTCTGTCAGGTGTCGTTTGTGGCCATGGCATGAATTTTC
GATGCTGTGACACAGGTAAATTTCGAGCTGCTGTAGGTGGTGCAGGTGTT
TTTTGCGGGGAATCAGTTGCATCGTGCGGTAAAACAGTAGCCCCTTGTTG
TGGCGAGGCTTCTTGTGATGGTAAAGATAATACTGGTGGTGACGAAAATT
CATCCGACGATGGCGGAAATAATCCAGGTTGCGCAGATAGTCTTTGTTGC
GGTTGTATATGAGGCATTCTTTGCGTCGCCCCCGAGGACCCTTGAGGTGG
CTCGGTCGTATTTTGCGCCGATATAGATTCTATTTGTTGACGTTCTCGTA
GAGCTGCACCAATTCTTTCTATTGATTCCGCAATGTTTTTGTCAGTAGAT
CGAGTAGGTTTTTTGGTGGCTTGTTGGATAGCTGTTGGAGTAGGTTGTTG
GGTGGCTTTTTGGGAAGTTTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGG
TGGCTTTTTGGGTAGGTTGTTGGGTGGTCGATTGAGTAGGTTGTTTGACG
GCTTGTTCGGTGGCATGTTGGAGAGGTTGTTGGACAACTGGTTGAGTAGG
TTGTCGGTTGGTTGATTGAATAGGTAGTTTGGCGGCTTGTCGGGTGGCAA
GTTGAGTAGGTTGTTGGGCGGCTTGTTGGAGAGATTGTTTGGCAACTGGT
TGAGTAGGTTGTCGGGTGGTTGATTGGGTAGGTTGTTTGGCGGATTTTTG
GGCGGCTTGTTGAGTAGTTTGTTGGGCGGTCAATGGAGTAGGTTGTTTGA
CGTGGACAGCTTGTTGGGTCGCAGGTTGGGCAGGTTGTTTGGCGGCTTTT
TGCATGGGTGGTTGGGCGCCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGT
CGAGGATTGCGTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_77:230386..233832+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072362 ID=TCONS_00072362|Name=TCONS_00072362|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at scaffold_77:230386..233832+ (Clytia hemisphaerica)
TTTTGCTTGTTCTACGTTTTCAATTTCAAGAGTATTtggtttttcttctt
ctttatcaCCAGAAGGGCGTTGTCCGACAGCACCGAAATCACCACCCTCC
GGGCGGGAATCGTTCAAGGTGAGCGAAGAGCGTGACAAGAAATCAGACAA
AAGGGTGGAAGACGCGATGCGTGGTAATTCTTCGGGTGAATTTACTTCTT
GTGATGTCTGTGTAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCCTTC
NGTGTGATGTCTGTGAAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCC
TTCATCACGTCTCTTGATGGAGTCTCTTCTTCAATGTCCTGGAACTCTGT
GAAACATGTCAATGGAGTGTTGACATCGATGCTGGGAAAGTGGACCAATT
CTCTGGAAGGAGTCAATACTTTCTCTGGACATCCTGGGAAGTTGTATCGT
TCAGGGATAACGCCATATTCTCTTAGGTTGTAGAAAGTTGTTTCAGGTGA
GAAGGATTTTCTTTCCGGTCTTTTGACTGGAGATTCGTCCAGACATGGTT
CGTCAGGTTGGCATGATGAGACGGTTTGACATTTGAATTGTATCTCTGGT
AAAGAAGTAGGTTCCATGATGTGTCTACTTAAAGCCGCTGCTTCATCCAA
ATTTTTCTCAATGCTACCAGGTTGTCGATGAAACTGGTTGTCATATTCAT
TCATTTGGCAACGCATTTGTTCGATTTCTCGACGAATAGTATTCAACTGT
TCAGAACCTGTTTCGTGTTGTTGTTCCTCGCGAACCTTTCTGTTCTCCAG
GAGGATTTTATCCAACCGGCTGAGTGTTTGTTCTTCATGCACTGATGAGT
CTGCTGACAACGAATCTTTATCGTCCCCCATGTTcacttctttttcttca
ttttggtCATCTTCATAGTTTGCCATTATCGAATCCAAATCTTGAAGTTC
TGCTTCCAGGTTCTGAATATGCTCTTCGTTGTTTTTTAAATGTTCGCGAA
ACTTTTGTAGACCATCATTCTCATTTGATTGAGATTTATCTTTCGGTTTC
TTCTTTTCTACTTTCACTGGAAGGGCTAAATCTTTCCCAACAATCAGACA
CATTGGTTGGATGTCCTTAGGCTTTTCATCCTTACTCGCGAGTTCCGAGG
ACTGGGTAACAGGCTTTTTTGAAGGTGGTGCGTACTCTTCACAAAGCTGC
TCACGCAAGTTGTCTTTATGTGATTGTAAAACATGTTCGTTATCTTTCGC
AGAAAGCAATATCTTATTTTTGAATTCTTCCCACTCtttgttttgaactt
tttcTGTATTTTGTCTTTCATTCATTGTCGTCTTTTTGGTTTGACTGTTT
GTTGTTTTCGCTTTCGATTCCGTCGGAGTGGGACTAGATATTGGTTTTCT
AGATTTCTCGGTTAGTTCATTTGGAGCTGGTGCCTTTGGTATGTTTTCTT
GACTATTCGGTGACATAAATGATGGGTGGTCTCTTTGCCGTTTGACATTT
TGTCTGGTGGCTGCATTTGTTTGGGGTAATAAAGTTTGTGGTAACGTTCT
TCTCTGCACCCTTTGTTGCGGTGACACAGCTGTTGTTTGTTGTGGTGCGG
TAGGATTTTCTTGCGTTTGAACAAGTGGTCTTTTCAATAGCGTTTTAGCC
GGCTGACTGTTGACTGATGGACTTTGAGGAAGTGATGTTGGCGAAGTTTG
TGGAAAAGGCTGTCTGTCAGGTGTCGTTTGTGGCCATGGCATGAATTTTC
GATGCTGTGACACAGGTAAATTTCGAGCTGCTGTAGGTGGTGCAGGTGTT
TTTTGCGGGGAATCAGTTGCATCGTGCGGTAAAACAGTAGCCCCTTGTTG
TGGCGAGGCTTCTTGTGATGGTAAAGATAATACTGGTGGTGACGAAAATT
CATCCGACGATGGCGGAAATAATCCAGGTTGCGCAGATAGTCTTTGTTGC
GGTTGTATATGAGGCATTCTTTGCGTCGCCCCCGAGGACCCTTGAGGTGG
CTCGGTCGTATTTTGCGCCGATATAGATTCTATTTGTTGACGTTCTCGTA
GAGCTGCACCAATTCTTTCTATTGATTCCGCAATGTTTTTGTCAGTAGAT
CGAGTAGGTTTTTTGGTGGCTTGTTGGATAGCTGTTGGAGTAGGTTGTTG
GGTGGCTTTTTGGGAAGTTTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGG
TGGCTTTTTGGGTAGGTTGTTGGGTGGTCGATTGAGTAGGTTGTTTGACG
GCTTGTTCGGTGGCATGTTGGAGAGGTTGTTGGACAACTGGTTGAGTAGG
TTGTCGGTTGGTTGATTGAATAGGTTGTTTGGCGGCTTGTCGGGTGGCAA
TTAGAGTAGGTTGTTGGGCGGCTTGTTGGAGAGATTGTTTGGCAACTGGT
TGAGTAGGTTGTCGGGTGGTTGATTGGGTAGGttgtttgatggatttttg
gGCGGCTGGTTGAGTAGTTTGTTGGGCGGTCAATTGAGTAGGTTGTTTGA
CGTTGACAGCTTGTTGGGTGGCAGGTTGGGCAGGTTGTTTGGCGGCTTTT
TGCATGGGTGGTTGGGCGCCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGT
CGAGGATTGCGTTGGTCGTGTTTGATCATGTTCTTCTAAAATGTTAATTT
ATGAATCACGAGTTATTACTTGGAACGTTGACGAATTTGCCTTNTTGTGA
TGGTAAAGATAATACTGGTGGTGACGAAAATTTATCCGACGGTGGCGGAA
ATAATCCAGGTTGCGCAGATAGTCTTTGTTGCGGTTGTATATGAGGCATT
CTTTGCGTCGCCCCCGAGGACCCTTGAGGTGGCTCGGTCGTATTTTGCGC
CGATATAGATTCTATTTGTTGACGTTCTCGTAGAGCTGCACCAATTCTTT
CTATTGATTCCGCAATGTTTTTGTCAGTAGATCGAGTAGGTTTTTTGGTG
GCTTGTTGGATAGCTGTTGGAGTAGGTTGTTGGGTGGCTTTTTGGGAAGT
TTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGGTGGCTTTTTGGGTAGGTT
GTTGGGTGGTCGATTGAGTAGGTTGTTTGACGGCTTGTTGGGTGGCATGT
TGGAGAGGTTGTTGGACAACTGGTTGAGTAGGTTGTCGGTTGGTTGATTG
GATAGGTAGTTTGGCGGCTTGTCGGGTGGCAAGTTGAGTAGGTTGTTGGG
CGGCTTGTTGGAGAGATTGTTTGGCAACTGGTTGAGTAGGTTGTCGGGTG
GTTGATTGGGTAGGTTGTTTGGCGGATTTTTGGGCGGCTTGTTGAGTAGT
TTGTTGGGCGGTCAATGGAGTAGGTTGTTTGACGTGGACAGCTTGTTGGG
TCGCAGGTTGGGCAGGTTGTTTGGCGGCTTTTTGCATGGGTGGTTGGGCG
CCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGTCGAGGATTGCGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044933XLOC_044933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072362-exon-scaffold_77-1491911889:230386..232708TCONS_00072362-exon-scaffold_77-1491911889:230386..232708Clytia hemisphaericaexon
TCONS_00072362-exon-scaffold_77-1510915933:230386..232708TCONS_00072362-exon-scaffold_77-1510915933:230386..232708Clytia hemisphaericaexon
TCONS_00072362-exon-scaffold_77-1575043694:230386..232708TCONS_00072362-exon-scaffold_77-1575043694:230386..232708Clytia hemisphaericaexon
TCONS_00072362-exon-scaffold_77-1491911889:233541..233832TCONS_00072362-exon-scaffold_77-1491911889:233541..233832Clytia hemisphaericaexon
TCONS_00072362-exon-scaffold_77-1510915933:233541..233832TCONS_00072362-exon-scaffold_77-1510915933:233541..233832Clytia hemisphaericaexon
TCONS_00072362-exon-scaffold_77-1575043694:233541..233832TCONS_00072362-exon-scaffold_77-1575043694:233541..233832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:230386..233832 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0287584	0	0	0.0198852	0	0	0	0	0	0	0	0	0.00940303	0	0.0269565	0	0	0	0	0	0	0	0	12.7579	1.70003	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top