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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072361 ID=TCONS_00072361|Name=TCONS_00072361|organism=Clytia hemisphaerica|type=transcript|length=3397bp
TGGTTTTGCTTGTTCTACGTTTTCAATTTCAAGAGTATTtggtttttctt
cttctttatcaCCAGAAGGGCGTTGTCCGACAGCACCGAAATCACCACCC
TCCGGGCGGGAATCGTTCAAGGTGAGCGAAGAGCGTGACAAGAAATCAGA
CAAAAGGGTGGAAGACGCGATGCGTGGTAATTCTTCGGGTGAATTTACTT
CTTGTGATGTCTGTGTAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCC
TTCATCACGTCTCTTGATGGAGTCTCTTCTTCAATGTCCTGGAACTCTGT
GAAACATGTCAATGGAGTGTTGACATCGATGCTGGGAAAGTGGACCAATT
CTCTGGAAGGAGTCAATACTTTCTCTGGACATCCTGGGAAGTTGTATCGT
TCAGGGATAACGCCATATTCTCTTAGGTTGTAGAAAGTTGTTTCAGGTGA
GAAGGATTTTCTTTCCGGTCTTTTGACTGGAGATTCGTCCAGACATGGTT
CGTCAGGTTGGCATGATGAGACGGTTTGACATTTGAATTGTATCTCTGGT
AAAGAAGTAGGTTCCATGATGTGTCTACTTAAAGCCGCTGCTTCATCCAA
ATTTTTCTCAATGCTACCAGGTTGTCGATGAAACTGGTTGTCATATTCAT
TCATTTGGCAACGCATTTGTTCGATTTCTCGACGAATAGTATTCAACTGT
TCAGAACCTGTTTCGTGTTGTTGTTCCTCGCGAACCTTTCTGTTCTCCAG
GAGGATTTTATCCAACCGGCTGAGTGTTTGTTCTTCATGCACTGATGAGT
CTGCTGACAACGAATCTTTATCGTCCCCCATGTTcacttctttttcttca
ttttggtCATCTTCATAGTTTGCCATTATCGAATCCAAATCTTGAAGTTC
TGCTTCCAGGTTCTGAATATGCTCTTCGTTGTTTTTTAAATGTTCGCGAA
ACTTTTGTAGACCATCATTCTCATTTGATTGAGATTTATCTTTCGGTTTC
TTCTTTTCTACTTTCACTGGAAGGGCTAAATCTTTCCCAACAATCAGACA
CATTGGTTGGATGTCCTTAGGCTTTTCATCCTTACTCGCGAGTTCCGAGG
ACTGGGTAACAGGCTTTTTTGAAGGTGGTGCGTACTCTTCACAAAGCTGC
TCACGCAAGTTGTCTTTATGTGATTGTAAAACATGTTCGTTATCTTTCGC
AGAAAGCAATATCTTATTTTTGAATTCTTCCCACTCtttgttttgaactt
tttcTGTATTTTGTCTTTCATTCATTGTCGTCTTTTTGGTTTGACTGTTT
GTTGTTTTCGCTTTCGATTCCGTCGGAGTGGGACTAGATATTGGTTTTCT
AGATTTCTCGGTTAGTTCATTTGGAGCTGGTGCCTTTGGTATGTTTTCTT
GACTATTCGGTGACATAAATGATGGGTGGTCTCTTTGCCGTTTGACATTT
TGTCTGGTGGCTGCATTTGTTTGGGGTAATAAAGTTTGTGGTAACGTTCT
TCTCTGCACCCTTTGTTGCGGTGACACAGCTGTTGTTTGTTGTGGTGCGG
TAGGATTTTCTTGCGTTTGAACAAGTGGTCTTTTCAATAGCGTTTTAGCC
GGCTGACTGTTGACTGATGGACTTTGAGGAAGTGATGTTGGCGAAGTTTG
TGGAAAAGGCTGTCTGTCAGGTGTCGTTTGTGGCCATGGCATGAATTTTC
GATGCTGTGACACAGGTAAATTTCGAGCTGCTGTAGGTGGTGCAGGTGTT
TTTTGCGGGGAATCAGTTGCATCGTGCGGTAAAACAGTAGCCCCTTGTTG
TGGCGAGGCTTCTTGTGATGGTAAAGATAATACTGGTGGTGACGAAAATT
CATCCGACGATGGCGGAAATAATCCAGGTTGCGCAGATAGTCTTTGTTGC
GGTTGTATATGAGGCATTCTTTGCGTCGCCCCCGAGGACCCTTGAGGTGG
CTCGGTCGTATTTTGCGCCGATATAGATTCTATTTGTTGACGTTCTCGTA
GAGCTGCACCAATTCTTTCTATTGATTCCGCAATGTTTTTGTCAGTAGAT
CGAGTAGGTTTTTTGGTGGCTTGTTGGATAGCTGTTGGAGTAGGTTGTTG
GGTGGCTTTTTGGGAAGTTTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGG
TGGCTTTTTGGGTAGGTTGTTGGGTGGTCGATTGAGTAGGTTGTTTGACG
GCTTGTTCGGTGGCATGTTGGAGAGGTTGTTGGACAACTGGTTGAGTAGG
TTGTCGGTTGGTTGATTGAATAGGTTGTTTGGCGGCTTGTCGGGTGGCAA
TTAGAGTAGGTTGTTGGGCGGCTTGTTGGAGAGATTGTTTGGCAACTGGT
TGAGTAGGTTGTCGGGTGGTTGATTGGGTAGGttgtttgatggatttttg
gGCGGCTGGTTGAGTAGTTTGTTGGGCGGTCAATTGAGTAGGTTGTTTGA
CGTTGACAGCTTGTTGGGTGGCAGGTTGGGCAGGTTGTTTGGCGGCTTTT
TGCATGGGTGGTTGGGCGCCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGT
CGAGGATTGCGTTGGTCGTGTTTGATCATGTTCTTCTAAAATGTTAATTT
ATGAATCACGAGTTATTACTTGGAACGTTGACGAATTTGCCTTNTTGTGA
TGGTAAAGATAATACTGGTGGTGACGAAAATTTATCCGACGGTGGCGGAA
ATAATCCAGGTTGCGCAGATAGTCTTTGTTGCGGTTGTATATGAGGCATT
CTTTGCGTCGCCCCCGAGGACCCTTGAGGTGGCTCGGTCGTATTTTGCGC
CGATATAGATTCTATTTGTTGACGTTCTCGTAGAGCTGCACCAATTCTTT
CTATTGATTCCGCAATGTTTTTGTCAGTAGATCGAGTAGGTTTTTTGGTG
GCTTGTTGGATAGCTGTTGGAGTAGGTTGTTGGGTGGCTTTTTGGGAAGT
TTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGGTGGCTTTTTGGGTAGGTT
GTTGGGTGGTCGATTGAGTAGGTTGTTTGACGGCTTGTTGGGTGGCATGT
TGGAGAGGTTGTTGGACAACTGGTTGAGTAGGTTGTCGGTTGGTTGATTG
GATAGGTAGTTTGGCGGCTTGTCGGGTGGCAAGTTGAGTAGGTTGTTGGG
CGGCTTGTTGGAGAGATTGTTTGGCAACTGGTTGAGTAGGTTGTCGGGTG
GTTGATTGGGTAGGTTGTTTGGCGGATTTTTGGGCGGCTTGTTGAGTAGT
TTGTTGGGCGGTCAATGGAGTAGGTTGTTTGACGTGGACAGCTTGTTGGG
TCGCAGGTTGGGCAGGTTGTTTGGCGGCTTTTTGCATGGGTGGTTGGGCG
CCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGTCGAGGATTGCGTTGG Run BLAST on NCBI transcript from alignment at scaffold_77:230383..233832+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072361 ID=TCONS_00072361|Name=TCONS_00072361|organism=Clytia hemisphaerica|type=transcript|length=3450bp|location=Sequence derived from alignment at scaffold_77:230383..233832+ (Clytia hemisphaerica)
TGGTTTTGCTTGTTCTACGTTTTCAATTTCAAGAGTATTtggtttttctt
cttctttatcaCCAGAAGGGCGTTGTCCGACAGCACCGAAATCACCACCC
TCCGGGCGGGAATCGTTCAAGGTGAGCGAAGAGCGTGACAAGAAATCAGA
CAAAAGGGTGGAAGACGCGATGCGTGGTAATTCTTCGGGTGAATTTACTT
CTTGTGATGTCTGTGTAATGACTTGAAGCAGTTCGTTTGATAAGGCTTCC
TTCNGTGTGATGTCTGTGAAATGACTTGAAGCAGTTCGTTTGATAAGGCT
TCCTTCATCACGTCTCTTGATGGAGTCTCTTCTTCAATGTCCTGGAACTC
TGTGAAACATGTCAATGGAGTGTTGACATCGATGCTGGGAAAGTGGACCA
ATTCTCTGGAAGGAGTCAATACTTTCTCTGGACATCCTGGGAAGTTGTAT
CGTTCAGGGATAACGCCATATTCTCTTAGGTTGTAGAAAGTTGTTTCAGG
TGAGAAGGATTTTCTTTCCGGTCTTTTGACTGGAGATTCGTCCAGACATG
GTTCGTCAGGTTGGCATGATGAGACGGTTTGACATTTGAATTGTATCTCT
GGTAAAGAAGTAGGTTCCATGATGTGTCTACTTAAAGCCGCTGCTTCATC
CAAATTTTTCTCAATGCTACCAGGTTGTCGATGAAACTGGTTGTCATATT
CATTCATTTGGCAACGCATTTGTTCGATTTCTCGACGAATAGTATTCAAC
TGTTCAGAACCTGTTTCGTGTTGTTGTTCCTCGCGAACCTTTCTGTTCTC
CAGGAGGATTTTATCCAACCGGCTGAGTGTTTGTTCTTCATGCACTGATG
AGTCTGCTGACAACGAATCTTTATCGTCCCCCATGTTcacttctttttct
tcattttggtCATCTTCATAGTTTGCCATTATCGAATCCAAATCTTGAAG
TTCTGCTTCCAGGTTCTGAATATGCTCTTCGTTGTTTTTTAAATGTTCGC
GAAACTTTTGTAGACCATCATTCTCATTTGATTGAGATTTATCTTTCGGT
TTCTTCTTTTCTACTTTCACTGGAAGGGCTAAATCTTTCCCAACAATCAG
ACACATTGGTTGGATGTCCTTAGGCTTTTCATCCTTACTCGCGAGTTCCG
AGGACTGGGTAACAGGCTTTTTTGAAGGTGGTGCGTACTCTTCACAAAGC
TGCTCACGCAAGTTGTCTTTATGTGATTGTAAAACATGTTCGTTATCTTT
CGCAGAAAGCAATATCTTATTTTTGAATTCTTCCCACTCtttgttttgaa
ctttttcTGTATTTTGTCTTTCATTCATTGTCGTCTTTTTGGTTTGACTG
TTTGTTGTTTTCGCTTTCGATTCCGTCGGAGTGGGACTAGATATTGGTTT
TCTAGATTTCTCGGTTAGTTCATTTGGAGCTGGTGCCTTTGGTATGTTTT
CTTGACTATTCGGTGACATAAATGATGGGTGGTCTCTTTGCCGTTTGACA
TTTTGTCTGGTGGCTGCATTTGTTTGGGGTAATAAAGTTTGTGGTAACGT
TCTTCTCTGCACCCTTTGTTGCGGTGACACAGCTGTTGTTTGTTGTGGTG
CGGTAGGATTTTCTTGCGTTTGAACAAGTGGTCTTTTCAATAGCGTTTTA
GCCGGCTGACTGTTGACTGATGGACTTTGAGGAAGTGATGTTGGCGAAGT
TTGTGGAAAAGGCTGTCTGTCAGGTGTCGTTTGTGGCCATGGCATGAATT
TTCGATGCTGTGACACAGGTAAATTTCGAGCTGCTGTAGGTGGTGCAGGT
GTTTTTTGCGGGGAATCAGTTGCATCGTGCGGTAAAACAGTAGCCCCTTG
TTGTGGCGAGGCTTCTTGTGATGGTAAAGATAATACTGGTGGTGACGAAA
ATTCATCCGACGATGGCGGAAATAATCCAGGTTGCGCAGATAGTCTTTGT
TGCGGTTGTATATGAGGCATTCTTTGCGTCGCCCCCGAGGACCCTTGAGG
TGGCTCGGTCGTATTTTGCGCCGATATAGATTCTATTTGTTGACGTTCTC
GTAGAGCTGCACCAATTCTTTCTATTGATTCCGCAATGTTTTTGTCAGTA
GATCGAGTAGGTTTTTTGGTGGCTTGTTGGATAGCTGTTGGAGTAGGTTG
TTGGGTGGCTTTTTGGGAAGTTTGTTTGTCGGCTGGTTGAGTAGGTTGTT
GGGTGGCTTTTTGGGTAGGTTGTTGGGTGGTCGATTGAGTAGGTTGTTTG
ACGGCTTGTTCGGTGGCATGTTGGAGAGGTTGTTGGACAACTGGTTGAGT
AGGTTGTCGGTTGGTTGATTGAATAGGTTGTTTGGCGGCTTGTCGGGTGG
CAATTAGAGTAGGTTGTTGGGCGGCTTGTTGGAGAGATTGTTTGGCAACT
GGTTGAGTAGGTTGTCGGGTGGTTGATTGGGTAGGttgtttgatggattt
ttggGCGGCTGGTTGAGTAGTTTGTTGGGCGGTCAATTGAGTAGGTTGTT
TGACGTTGACAGCTTGTTGGGTGGCAGGTTGGGCAGGTTGTTTGGCGGCT
TTTTGCATGGGTGGTTGGGCGCCTGTTTGGGTAGGTTTTTGGGCGTTTGT
TGTCGAGGATTGCGTTGGTCGTGTTTGATCATGTTCTTCTAAAATGTTAA
TTTATGAATCACGAGTTATTACTTGGAACGTTGACGAATTTGCCTTNTTG
TGATGGTAAAGATAATACTGGTGGTGACGAAAATTTATCCGACGGTGGCG
GAAATAATCCAGGTTGCGCAGATAGTCTTTGTTGCGGTTGTATATGAGGC
ATTCTTTGCGTCGCCCCCGAGGACCCTTGAGGTGGCTCGGTCGTATTTTG
CGCCGATATAGATTCTATTTGTTGACGTTCTCGTAGAGCTGCACCAATTC
TTTCTATTGATTCCGCAATGTTTTTGTCAGTAGATCGAGTAGGTTTTTTG
GTGGCTTGTTGGATAGCTGTTGGAGTAGGTTGTTGGGTGGCTTTTTGGGA
AGTTTGTTTGTCGGCTGGTTGAGTAGGTTGTTGGGTGGCTTTTTGGGTAG
GTTGTTGGGTGGTCGATTGAGTAGGTTGTTTGACGGCTTGTTGGGTGGCA
TGTTGGAGAGGTTGTTGGACAACTGGTTGAGTAGGTTGTCGGTTGGTTGA
TTGGATAGGTAGTTTGGCGGCTTGTCGGGTGGCAAGTTGAGTAGGTTGTT
GGGCGGCTTGTTGGAGAGATTGTTTGGCAACTGGTTGAGTAGGTTGTCGG
GTGGTTGATTGGGTAGGTTGTTTGGCGGATTTTTGGGCGGCTTGTTGAGT
AGTTTGTTGGGCGGTCAATGGAGTAGGTTGTTTGACGTGGACAGCTTGTT
GGGTCGCAGGTTGGGCAGGTTGTTTGGCGGCTTTTTGCATGGGTGGTTGG
GCGCCTGTTTGGGTAGGTTTTTGGGCGTTTGTTGTCGAGGATTGCGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072361-exon-scaffold_77-1491911889:230383..230626 | TCONS_00072361-exon-scaffold_77-1491911889:230383..230626 | Clytia hemisphaerica | exon |
| TCONS_00072361-exon-scaffold_77-1510915933:230383..230626 | TCONS_00072361-exon-scaffold_77-1510915933:230383..230626 | Clytia hemisphaerica | exon |
| TCONS_00072361-exon-scaffold_77-1575043694:230383..230626 | TCONS_00072361-exon-scaffold_77-1575043694:230383..230626 | Clytia hemisphaerica | exon |
| TCONS_00072361-exon-scaffold_77-1491911889:230680..233832 | TCONS_00072361-exon-scaffold_77-1491911889:230680..233832 | Clytia hemisphaerica | exon |
| TCONS_00072361-exon-scaffold_77-1510915933:230680..233832 | TCONS_00072361-exon-scaffold_77-1510915933:230680..233832 | Clytia hemisphaerica | exon |
| TCONS_00072361-exon-scaffold_77-1575043694:230680..233832 | TCONS_00072361-exon-scaffold_77-1575043694:230680..233832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:230383..233832 + |
Blast
The following BLAST results are available for this feature:
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