|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072339 ID=TCONS_00072339|Name=TCONS_00072339|organism=Clytia hemisphaerica|type=transcript|length=1528bp
TTCTCTTTAAGATtatcttttaaaagttttgtaatatattaaataatatt
tttaattaCATTTACACGAAAAGAAATAAATTCTATACACAAAAAATAtc
gttttaaaaattaaaattagaaatttccacgtcaaaaaatataatgttaa
aattctctttaaaattcaaaaaaaaatctagaTACGTTCAAAACCAGAAA
GTTCAAAAGTAAACATAAAAGCTTGTTGTCTCGTTCAGTCAAACGAAAAG
GAAGCAAGTATTTGATCATTTTGATGAACTATAtcctacacattttttat
aattttaagcctataaaatgttcttagcatgttcacCATTTTGTCCATTT
ACCTAAGAAATGGGATGTTTTTGAGTTCCCAaagtcttgaaatgttctta
acttgttttaaaaattttggcctccgaagccttacgttcttatatagttt
gttcttataaaaaagttcgcaaacaatgataaaaaaagcAGAAATATATT
TCTGAAACCATAAACCACATTAATGTCAATGGCAACAAGGGTCATGACTA
TATTCACGAGTTTTTGTTCACTGCTTGGAAAATTTTTACGCCATTTCTTG
CTCTCTTGAGATGTGAAAGGTCTGTCTCTGTATGTATTTATGTTATTCGA
TGGTTCGCTGTGTTTTCAAAGAGCTGCTTGACCCTTTTCTAGCTTAAAAT
AGATCGTAGGGTTCACATTGAAACAATGGTGTCCCTTTATCACCAGTATG
GTCACATGCTGCCAAAAAAAGTCTGTTTGATTCATTGGGTAAAGCAACAT
TGTCCATTTTCCATGTCATTTTTGTCTATTTACATTCCTATACTTTCTAT
CAAAACTCATACAATCAAATGTTCAAAAAGTCCAAATTCAAGTTTTATAA
TTCGACATACGCGTTGTAGTTTTTAATGATGAATGATCTTTCTTGTAGTT
AGGTACAATTAAACTCCTTTTTAGTTCGCATTCCTTTTTAATACAATCTT
CACGCCTCGTTTTCATGCAGCTAGAAACTTTTGCTAAATCCTTCTGTTTG
AAACAATCTCGCACGTGTGCTGCACACGTGGACACACATTCTTGAAAACT
CTGTTTCTTACACAATGTTAAACATTCCGTTTGTTCTTCGTTGCATTGCC
TCATAGACAGTAACGTGTTTTGGAAACCATCCATTTTACCAATAATCTCT
GATTGGCAGAATTTCGTTTTCTCCCGACAATGATGTAAACATAAGTTCTT
CATAGTCGTTGATCCGTCGGCCATTAAAACGACCGAGAAAATCAGAATCG
TTATCATCATAAATCCATATGTCAACATATCGCGTATAAACTTGATGCGT
TTTATCAAAAAATCAGATCGTTTTGTTCTCTTTTTTACGCGTGTTTTTTT
TGTTCCGTGTGTTATACCAACAAACCTATAAATGAcaactttgttgtttt
tctctccTCTTTAATTTCAAAGGGAAAACAAAATcgagacatattttttg
caacaATTCATTTATGccacaattgaaa Run BLAST on NCBI protein sequence of TCONS_00072339-protein >TCONS_00072339-protein ID=TCONS_00072339-protein|Name=TCONS_00072339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MLTYGFMMITILIFSVVLMADGSTTMKNLCLHHCREKTKFCQSEIIGKMD
GFQNTLLSMRQCNEEQTECLTLCKKQSFQECVSTCAAHVRDCFKQKDLAK
VSSCMKTRREDCIKKECELKRSLIVPNYKKDHSSLKTTTRMSNYKT Run BLAST on NCBI transcript from alignment at scaffold_76:127438..128965 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072339 ID=TCONS_00072339|Name=TCONS_00072339|organism=Clytia hemisphaerica|type=transcript|length=1528bp|location=Sequence derived from alignment at scaffold_76:127438..128965 (Clytia hemisphaerica)
tttcaattgtggCATAAATGAATtgttgcaaaaaatatgtctcgATTTTG
TTTTCCCTTTGAAATTAAAGAggagagaaaaacaacaaagttgTCATTTA
TAGGTTTGTTGGTATAACACACGGAACAAAAAAAACACGCGTAAAAAAGA
GAACAAAACGATCTGATTTTTTGATAAAACGCATCAAGTTTATACGCGAT
ATGTTGACATATGGATTTATGATGATAACGATTCTGATTTTCTCGGTCGT
TTTAATGGCCGACGGATCAACGACTATGAAGAACTTATGTTTACATCATT
GTCGGGAGAAAACGAAATTCTGCCAATCAGAGATTATTGGTAAAATGGAT
GGTTTCCAAAACACGTTACTGTCTATGAGGCAATGCAACGAAGAACAAAC
GGAATGTTTAACATTGTGTAAGAAACAGAGTTTTCAAGAATGTGTGTCCA
CGTGTGCAGCACACGTGCGAGATTGTTTCAAACAGAAGGATTTAGCAAAA
GTTTCTAGCTGCATGAAAACGAGGCGTGAAGATTGTATTAAAAAGGAATG
CGAACTAAAAAGGAGTTTAATTGTACCTAACTACAAGAAAGATCATTCAT
CATTAAAAACTACAACGCGTATGTCGAATTATAAAACTTGAATTTGGACT
TTTTGAACATTTGATTGTATGAGTTTTGATAGAAAGTATAGGAATGTAAA
TAGACAAAAATGACATGGAAAATGGACAATGTTGCTTTACCCAATGAATC
AAACAGACTTTTTTTGGCAGCATGTGACCATACTGGTGATAAAGGGACAC
CATTGTTTCAATGTGAACCCTACGATCTATTTTAAGCTAGAAAAGGGTCA
AGCAGCTCTTTGAAAACACAGCGAACCATCGAATAACATAAATACATACA
GAGACAGACCTTTCACATCTCAAGAGAGCAAGAAATGGCGTAAAAATTTT
CCAAGCAGTGAACAAAAACTCGTGAATATAGTCATGACCCTTGTTGCCAT
TGACATTAATGTGGTTTATGGTTTCAGAAATATATTTCTgctttttttat
cattgtttgcgaacttttttataagaacaaactatataagaacgtaaggc
ttcggaggccaaaatttttaaaacaagttaagaacatttcaagacttTGG
GAACTCAAAAACATCCCATTTCTTAGGTAAATGGACAAAATGgtgaacat
gctaagaacattttataggcttaaaattataaaaaatgtgtaggaTATAG
TTCATCAAAATGATCAAATACTTGCTTCCTTTTCGTTTGACTGAACGAGA
CAACAAGCTTTTATGTTTACTTTTGAACTTTCTGGTTTTGAACGTAtcta
gatttttttttgaattttaaagagaattttaacattatattttttgacgt
ggaaatttctaattttaatttttaaaacgaTATTTTTTGTGTATAGAATT
TATTTCTTTTCGTGTAAATGtaattaaaaatattatttaatatattacaa
aacttttaaaagataATCTTAAAGAGAA Coding sequence (CDS) from alignment at scaffold_76:127438..128965 >TCONS_00072339 ID=TCONS_00072339|Name=TCONS_00072339|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_76:127438..128965 (Clytia hemisphaerica)
ATGTTGACATATGGATTTATGATGATAACGATTCTGATTTTCTCGGTCGT
TTTAATGGCCGACGGATCAACGACTATGAAGAACTTATGTTTACATCATT
GTCGGGAGAAAACGAAATTCTGCCAATCAGAGATTATTGGTAAAATGGAT
GGTTTCCAAAACACGTTACTGTCTATGAGGCAATGCAACGAAGAACAAAC
GGAATGTTTAACATTGTGTAAGAAACAGAGTTTTCAAGAATGTGTGTCCA
CGTGTGCAGCACACGTGCGAGATTGTTTCAAACAGAAGGATTTAGCAAAA
GTTTCTAGCTGCATGAAAACGAGGCGTGAAGATTGTATTAAAAAGGAATG
CGAACTAAAAAGGAGTTTAATTGTACCTAACTACAAGAAAGATCATTCAT
CATTAAAAACTACAACGCGTATGTCGAATTATAAAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072339-exon-scaffold_76-1491911889:127438..128965 | TCONS_00072339-exon-scaffold_76-1491911889:127438..128965 | Clytia hemisphaerica | exon |
| TCONS_00072339-exon-scaffold_76-1510915933:127438..128965 | TCONS_00072339-exon-scaffold_76-1510915933:127438..128965 | Clytia hemisphaerica | exon |
| TCONS_00072339-exon-scaffold_76-1575043694:127438..128965 | TCONS_00072339-exon-scaffold_76-1575043694:127438..128965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:127438..128965 . |
Blast
The following BLAST results are available for this feature:
|
