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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=transcript|length=844bp
AGAAGATTGATCTCGAGAAGGGGCAATGTGAGAGTTCTTCGTTCCGACCG
AGGTACGAATTTTGTCGGAGCCGACAACGAATTGCAAGCCTTATTCAGTC
AAATGGACCACGATCGAATTCAATCGTTTATGCAAATCAACGGAGGAGAT
TGGCTCGTCTGGAAATTTAACCCACCAAAATCAAGCCACATGGGTGGAGT
CTGGGAAAGACAAATCCGCAGCGTACGTTCCATCTTATGCAACCTCATGG
ATCATCATGGAGATTGTGTTGACGATGAATCGTTTAGGACCTTCCTCTGT
GAAGCTGAATGTACTGTCAACTCGAGACCGTTAACCTACGACAGCATTGG
AGATCCACAGAGTCCAATCCCAATCAGCCCAATCACTTTGTTGACTGGAA
AAAGCCAGCTCGTACTACCTCCTCCAGGGAATTTCACCTCGAGCACCACT
ATGTACTGCAGACAGAGATGGAGACGAGTTCAACATCTAGCGAACGAATT
CTGGACACGCTGGCGCAAAGAATATCTCAACACCCTCCAAGAACGACGCA
AATGGCCATCAACCAGACGAAATCTGAGTATCGGTGATGTAGTCTTGTTG
AAAGATGGCGATCTCTTCCGTAATAACTGGAACATGGGAATCGTTCGGTC
GACAAAACAAAGCGCTGACGGTCTTGTTCGTTCTTGTACGTTGAAAACGA
GATCAGGAATATTTGAGCGACCGATTCACAAATTAGTTCTATTACTTGAA
TCCGAGTAGAAAGGTCCGATCCCAGCCGTGGGAGCCTTACTGATTGAAAT
GTTCGGAAAAAGATTGTGTTTATCTTTTTGGAGAGCCATGTTAT Run BLAST on NCBI protein sequence of TCONS_00072332-protein >TCONS_00072332-protein ID=TCONS_00072332-protein|Name=TCONS_00072332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
RRLISRRGNVRVLRSDRGTNFVGADNELQALFSQMDHDRIQSFMQINGGD
WLVWKFNPPKSSHMGGVWERQIRSVRSILCNLMDHHGDCVDDESFRTFLC
EAECTVNSRPLTYDSIGDPQSPIPISPITLLTGKSQLVLPPPGNFTSSTT
MYCRQRWRRVQHLANEFWTRWRKEYLNTLQERRKWPSTRRNLSIGDVVLL
KDGDLFRNNWNMGIVRSTKQSADGLVRSCTLKTRSGIFERPIHKLVLLLE
SE Run BLAST on NCBI transcript from alignment at scaffold_76:32672..33515 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_76:32672..33515 (Clytia hemisphaerica)
ATAACATGGCTCTCCAAAAAGATAAACACAATCTTTTTCCGAACATTTCA
ATCAGTAAGGCTCCCACGGCTGGGATCGGACCTTTCTACTCGGATTCAAG
TAATAGAACTAATTTGTGAATCGGTCGCTCAAATATTCCTGATCTCGTTT
TCAACGTACAAGAACGAACAAGACCGTCAGCGCTTTGTTTTGTCGACCGA
ACGATTCCCATGTTCCAGTTATTACGGAAGAGATCGCCATCTTTCAACAA
GACTACATCACCGATACTCAGATTTCGTCTGGTTGATGGCCATTTGCGTC
GTTCTTGGAGGGTGTTGAGATATTCTTTGCGCCAGCGTGTCCAGAATTCG
TTCGCTAGATGTTGAACTCGTCTCCATCTCTGTCTGCAGTACATAGTGGT
GCTCGAGGTGAAATTCCCTGGAGGAGGTAGTACGAGCTGGCTTTTTCCAG
TCAACAAAGTGATTGGGCTGATTGGGATTGGACTCTGTGGATCTCCAATG
CTGTCGTAGGTTAACGGTCTCGAGTTGACAGTACATTCAGCTTCACAGAG
GAAGGTCCTAAACGATTCATCGTCAACACAATCTCCATGATGATCCATGA
GGTTGCATAAGATGGAACGTACGCTGCGGATTTGTCTTTCCCAGACTCCA
CCCATGTGGCTTGATTTTGGTGGGTTAAATTTCCAGACGAGCCAATCTCC
TCCGTTGATTTGCATAAACGATTGAATTCGATCGTGGTCCATTTGACTGA
ATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAATTCGTACCTCGGTCG
GAACGAAGAACTCTCACATTGCCCCTTCTCGAGATCAATCTTCT Coding sequence (CDS) from alignment at scaffold_76:32672..33515 >TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_76:32672..33515 (Clytia hemisphaerica)
CTACTCGGATTCAAGTAATAGAACTAATTTGTGAATCGGTCGCTCAAATA
TTCCTGATCTCGTTTTCAACGTACAAGAACGAACAAGACCGTCAGCGCTT
TGTTTTGTCGACCGAACGATTCCCATGTTCCAGTTATTACGGAAGAGATC
GCCATCTTTCAACAAGACTACATCACCGATACTCAGATTTCGTCTGGTTG
ATGGCCATTTGCGTCGTTCTTGGAGGGTGTTGAGATATTCTTTGCGCCAG
CGTGTCCAGAATTCGTTCGCTAGATGTTGAACTCGTCTCCATCTCTGTCT
GCAGTACATAGTGGTGCTCGAGGTGAAATTCCCTGGAGGAGGTAGTACGA
GCTGGCTTTTTCCAGTCAACAAAGTGATTGGGCTGATTGGGATTGGACTC
TGTGGATCTCCAATGCTGTCGTAGGTTAACGGTCTCGAGTTGACAGTACA
TTCAGCTTCACAGAGGAAGGTCCTAAACGATTCATCGTCAACACAATCTC
CATGATGATCCATGAGGTTGCATAAGATGGAACGTACGCTGCGGATTTGT
CTTTCCCAGACTCCACCCATGTGGCTTGATTTTGGTGGGTTAAATTTCCA
GACGAGCCAATCTCCTCCGTTGATTTGCATAAACGATTGAATTCGATCGT
GGTCCATTTGACTGAATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAA
TTCGTACCTCGGTCGGAACGAAGAACTCTCACATTGCCCCTTCTCGAGAT
CAATCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072332-exon-scaffold_76-1491911889:32672..33515 | TCONS_00072332-exon-scaffold_76-1491911889:32672..33515 | Clytia hemisphaerica | exon |
| TCONS_00072332-exon-scaffold_76-1510915933:32672..33515 | TCONS_00072332-exon-scaffold_76-1510915933:32672..33515 | Clytia hemisphaerica | exon |
| TCONS_00072332-exon-scaffold_76-1575043694:32672..33515 | TCONS_00072332-exon-scaffold_76-1575043694:32672..33515 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:32672..33515 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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