|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072326 ID=TCONS_00072326|Name=TCONS_00072326|organism=Clytia hemisphaerica|type=transcript|length=1546bp
caaagtttcaattttaggcctattttttttggcacacccggtataacACT
TCTGCTCGAACAATattggataaatatttttctctaaacTCTCttgccta
aaggctcggaaaataacacgaaaaatctgaactcgaaaaatatatcccat
attgcACTCGGTACCGTGCGATAACTTTTAATTATTCTTAATCTTACCGG
AACAAAAGATTTTACAATGATTCCATGCGGCTCCAACATATTCTTTAAGT
ATGATACTTGAAGACTTCGATTGTTGTCAAATAAATTGCAGTGGACATAC
ATGATGCGACCATGAAACGATGGGTCCTGACGGCTCAACTGTAATGCCTT
TTCCCGTAGCAAGAGGCTTTTTCCTGTTCCGTATCCTCCCCAGAGTATGA
GTTTGTCAAACTTCGGATCAGTCGATTTGAAAGCTggtagctgattggtt
gaatagAACAATACATTGTCTGTTGTAGAGACTGTTTCTATAGCTTTTGT
AATATACTCCACCCAGTTCGTGCTTGTTATTGGCACTGAAACATGCACGC
TAAAGACAATAAtccttaaaacatttttaaggtGTTCTAACGAATCTGGT
AAACTGCTTTTACTGAGTAGAGGGAATCTCTTCAAAATGTTTGACAACCA
GAGATTCAAGTCTACAGTCATGTTAATATAATGTTGCGTCTGGAACGGCA
GAGTATCTTATTCCACGCAAATCACTGGGTAGAATTGCCATCCATTATCA
AACTGATCACCTAATAGTTCTTCGAGTGACTTtcgatatttttcaagttg
ggTACAGGCTTTATCTAAGGCTTCATCTGATGATGTCCGCTTTAGCTCAA
TACCGATGACGAGTTTTCTGGAATAAGAGAACATCAGAATGTCGAACTCT
CGATGTTTCTTGTTCTTAACATTGGTCATGAATTGCGCTGATTGTAATAT
AACCAAATCGTCTAAGGTGTGATCATCGATGACAGCTCATCCTTAGCGTT
CAGAATCCACTGGTTATAATCACGGCTATTGATGACATTGGTCTCGTTAT
CCAATTGAGTTTGAAGAAACTTGCCTAACTCTACAGTAAACCAATCATTC
GggtcatttttcatcaaattgtcAAGtgtttctctgattttcaaatggAC
GTCATAATCAAGAATGGATTGGCCTTTGTTATATTGGGTCGATTTGAAAA
CGGGTGGTATGAAAAAAGGCTGGTGACGAGTTTGGTCAAATAAGAAAGAT
TCAGCATACTCTCTCTCCAATAGATAGTCGGCTGCTTTGATTGGATCGCT
GAAAAGTAATCCATTTCCAAGATTAAATTGTGTCTTTTGACGAAGCAATG
TCTCGTTACTATTTCTTTGTATCTGTTCATATAATGATGTGTGTTGAGTG
CACTTTGATACATCGATCAATTCTGGTTTAAGTGAAAATATCTTTCTCAT
AATATCAGCCATCTTGTGTTGAAATACAAAATTATAACGTTATTCTCGAG
CACGAAAAAATCACAACAAACAGCTAGAAGTCAAATATTTATATAC Run BLAST on NCBI transcript from alignment at scaffold_76:142117..143901- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072326 ID=TCONS_00072326|Name=TCONS_00072326|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at scaffold_76:142117..143901- (Clytia hemisphaerica)
CAAAGTTTCAATTTTAGGCCTATTTTTTTTGGCACACCCGGTATAACACT
TCTGCTCGAACAATATTGGATAAATATTTTTCTCTAAACTCTCTTGCCTA
AAGGCTCGGAAAATAACACGAAAAATCTGAACTCGAAAAATATATCCCAT
ATTGCACTCGGTACCGTGCGATAACTTTTAATTATTCTTAATCTTACCGG
AACAAAAGATTTTACAATGATTCCATGCGGCTCCAACATATTCTTTAAGT
ATGATACTTGAAGACTTCGATTGTTGTCAAATAAATTGCAGTGGACATAC
ATGATGCGACCATGAAACGATGGGTCCTGACGGCTCAACTGTAATGCCTT
TTCCCGTAGCAAGAGGCTTTTTCCTGTTCCGTATCCTCCCCAGAGTATGA
GTTTGTCAAACTTCGGATCAGTCGATTTGAAAGCTGGTAGCTGATTGGTT
GAATAGAACAATACATTGTCTGTTGTAGAGACTGTTTCTATAGCTTTTGT
AATATACTCCACCCAGTTCGTGCTTGTTATTGGCACTGAAACATGCACGC
TAAAGACAATAATCCTTAAAACATTTTTAAGGTGTTCTAACGAATCTGGT
AAACTGCTTTTACTGAGTAGAGGGAATCTCTTCAAAATGTTTGACAACCA
GAGATTCAAGTCTACAGTCATGTTAATATAATGTTGCGTCTGGAACGGCA
GAGTATCTTATTCCACGCAAATCACTGGGTAGAATTGCCATCCATTATCA
AACTGATCACCTAATAGTTCTTCGAGTGACTTTCGATATTTTTCAAGTTG
GGTACAGGCTTTATCTAAGGCTTCATCTGATGATGTCCGCTTTAGCTCAA
TACCGATGACGAGTTTTCTGGAATAAGAGAACATCAGAATGTCGAACTCT
CGATGTTTCTTGTTCTTAACATTGGTCATGAATTGCGCTGATTGTAATAT
AACCAAATCGTCTAAGGTGTGATCATCGATGACAGCTCATCCTTAGCGTT
CAGAATCCACTGGTTATAATCACGGCTATTGATGACATTGGTCTCGTTAT
CCAATTGAGTTTGAAGAAACTTGCCTAACTCTACAGTAAACCAATCATTC
GGGTCATTTTTCATCAAATTGTCAAGTGTTTCTCTGATTTTCAAATGGAC
GTCATAATCAAGAATGGATTGGCCTTTGTTATATTGGGTCGATTTGAAAA
CGGGTGGTATGAAAAAAGGCTGGTGACGAGTTTGGTCAAATAAGAAAGAT
TCAGCATACTCTCTCTCCAATAGATAGTCGGCTGCTTTGATTGGATCGCT
GAAAAGTAATCCATTTCCAAGATTAAATTGTGTCTTTTGACGAAGCAATG
TCTCGTTACTATTTCTTTGTATCTGTTCATATAATGATGTGTGTTGAGTG
CACTTTGATACATCGATCAATTCTGGTTTAAGTGAAAATATTTTTCTCAT
AATATCAGCCATCTTGTGTTGAAATACAAAATTATAACGTTATTCTCGAG
CANCTCCAATAGATAGTCGGCTGCTTTGATTGGATCGCTGAAAAGTAATC
CATTTCCAAGATTAAATTGTGTCTTTTGACGAAGCAATGTCTCGTCACTG
TTTCTTTGTATCTGTTCATATAATAATGTGTGTCGAGTACACTTTGATAC
ATCGATCAATTCTGGTTTAAGTGAAAATATCTTTCTCATAATATCAGCCA
TCTTGTGTTGAAATACAAAATTATAACGTTATTCTCGAGCACGAAAAAAT
CACAACAAACAGCTAGAAGTCAAATATTTATATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072326-exon-scaffold_76-1575043694:142491..143901 | TCONS_00072326-exon-scaffold_76-1575043694:142491..143901 | Clytia hemisphaerica | exon |
| TCONS_00072326-exon-scaffold_76-1575043694:142117..142251 | TCONS_00072326-exon-scaffold_76-1575043694:142117..142251 | Clytia hemisphaerica | exon |
| TCONS_00072326-exon-scaffold_76-1510915933:142491..143901 | TCONS_00072326-exon-scaffold_76-1510915933:142491..143901 | Clytia hemisphaerica | exon |
| TCONS_00072326-exon-scaffold_76-1510915933:142117..142251 | TCONS_00072326-exon-scaffold_76-1510915933:142117..142251 | Clytia hemisphaerica | exon |
| TCONS_00072326-exon-scaffold_76-1491911889:142491..143901 | TCONS_00072326-exon-scaffold_76-1491911889:142491..143901 | Clytia hemisphaerica | exon |
| TCONS_00072326-exon-scaffold_76-1491911889:142117..142251 | TCONS_00072326-exon-scaffold_76-1491911889:142117..142251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:142117..143901 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
|
