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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072323 ID=TCONS_00072323|Name=TCONS_00072323|organism=Clytia hemisphaerica|type=transcript|length=2368bp
TGCTATGAAAATCCGAGGAATTGAATGTCTGTCCAGGACAATAAGGTGTC
AACTTTTGGTACCTAATAAACGCCCCACGCTTGTTATAATTTTAACCCTC
ATACCTTAGGACCTCCCCgtttataaatttttgaatatatttgaCACGCG
AGTCTTCAAAGTAGAATGAACTTCTTTTTTTCCTACgaatttctttcatt
taaaaacattcaaagttTCCATTCCATATATGTCTTAGCGTCTCAACCGC
TAAAACAAGCTGCTTTAATTCAAATTCATCGAATCTCATTTTCAAACGCA
AATACTCTTCTTCTCCTTCTGAAATCTTTAAAATCCAACGATATTTTATC
TTCCAGGATTACCCACGCGTCATAAATCAATTCCCACCGGAACCATGGGC
GGCTCGTTGGACAACGTTTTAATTTCCATAACGGTTTTTTATCCAAATGA
TGAATCATAAATCATCCTACTCATCTTACTCTTCATCCAATAGTTAATTT
CACAGCACTTATAACAATGGTTTTCGGTAGagtaacaaatatttttcatc
tTGGATGATGCTTCTTCATAACAGCATTGTATACTTTTCAAAGAACTCTC
TACTGATTGGTACAAGAATGTCATCATTCATCATtggactcttccagaaa
atgttcgtacatggggggttGAGGATATATAGTGGCCGGggatagtgaaa
aatctacaaaatttaccttgtccggggggagggggtaagTTTACTCTGTT
TTTGATtatccagggggtcaactaatgcttgtccgggggataagacctgc
tgtccgggggttaaaagtcacaatgtccgtgggacaaatttccaaaaagt
gttatatcctccacccccatattcaaattatttctggaaaagcccattcc
tCCTCCATTACTTTTCTAAGACTTTCCACCCATAGCGTTGGCGATATTTA
TTCAAACTGTGATACGGTAATTAGGGATGCAGCACATGAAAGgtcgacta
tcattcctctccgatgcgAAATTAGCCCGCTATTAAGAGCTTCAGCGGGG
GTGACCGCCAATCCACCATCGGAGGACGAACGTCAAGGGTACGATTTTCT
GGCTCTATAAGGTGCACTATAATGTTTTATAAAGTTTCTTGTGCAAAATT
TTGGAAGGTCTGACTACCTTTGCTTCCCCCGGAAAAGAGAGTCAGAGTTA
CATAGTTATATTTCTTCCCTGAGAAGTATTTTAATTGTTCAAAAAAAGCA
ATAGAATGATTTCTTGTATTATTTTGATCATGCTTTATGAAAAAAAGCTA
TATACCAGAATCATGCTTCAATAAGTCACATTTCACCATGCATCAAATCG
AATTCCATCAATAATTTCCTTTCAGTTTACATAATTGATACTTTGGTTAT
ACAAAACAACCGATCAAATTTCGTCGTAATCATCTTTTAACCAATCACGT
CTTACCAAACATCACTCATTAATAGTAATCATCATCGTAATCATCATCGT
CGTCATCGTAATGATGATGTCGGCGATGGTGTCGTCTTGGGAAATAATAA
TTATTGACATGGTGATGATGACGGTGATGAGGATGGAAATCATCATCCTC
GTATCCAGACTTCCATCGCAAATAATCAGCAAAGTCAGCTGGGATTTGTA
ACCCAGCTGCTCCATTTCCTAAGTTCAAACCTGGTACAACTGGGCTTCCT
GCAGGTGCAACGTTATTGACTGCCTCTGTTCCTTGTCCTCCTTGTCCTCC
CAAAGCTGTGTTTGCTTGTGCAGGGTTATTCATGAATTGGTTTGGTAATG
GATACATATTCGGGTTTAATGCACCTCCGTTGTTGTTATTGTAATTCGAA
TCATCGGGCGATCCTCGAGACGCCATTCCACCCGCCATTCCATTTCCAAA
ATACTGAGCAGGCTCATTGCCATATCTCACCACAGCTGGATTCACATTCG
CTGGAGATAAGATTCTACCAAGATTTCCATGCGCACCAACAGCTCCAGCA
TATCCTAAATCTCCCAAAGTGCTGACGCGACTTGCTTCTGGTATGGTAGC
TGGTATATGACCAGGTTTGGCAACAACATTCAATCCAGCAGGTTTTGCGT
TGATTTTGACTCCTTCAGCATCTGCAGTGACTTGTATTTCAGGTCCTCGA
TCCTCCATATGGAAATGCGTTGGTTGTCCTGATTGAACAACTTCTTTCTC
TTGGCAATGTACCAAATGGTTGCTTAGATTTAAAATTACAAACATCCATA
ATATTTTTTGCCttgtttttaaaacaaatcCCATATCTCTCTTCTTTTCT
tataatattcttatttttgaatCATTAGTAAACAAATTTAGGTGAGAATT
agttactttttaattttc Run BLAST on NCBI transcript from alignment at scaffold_76:117680..120047- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072323 ID=TCONS_00072323|Name=TCONS_00072323|organism=Clytia hemisphaerica|type=transcript|length=2368bp|location=Sequence derived from alignment at scaffold_76:117680..120047- (Clytia hemisphaerica)
TGCTATGAAAATCCGAGGAATTGAATGTCTGTCCAGGACAATAAGGTGTC
AACTTTTGGTACCTAATAAACGCCCCACGCTTGTTATAATTTTAACCCTC
ATACCTTAGGACCTCCCCGTTTATAAATTTTTGAATATATTTGACACGCG
AGTCTTCAAAGTAGAATGAACTTCTTTTTTTCCTACGAATTTCTTTCATT
TAAAAACATTCAAAGTTTCCATTCCATATATGTCTTAGCGTCTCAACCGC
TAAAACAAGCTGCTTTAATTCAAATTCATCGAATCTCATTTTCAAACGCA
AATACTCTTCTTCTCCTTCTGAAATCTTTAAAATCCAACGATATTTTATC
TTCCAGGATTACCCACGCGTCATAAATCAATTCCCACCGGAACCATGGGC
GGCTCGTTGGACAACGTTTTAATTTCCATAACGGTTTTTTATCCAAATGA
TGAATCATAAATCATCCTACTCATCTTACTCTTCATCCAATAGTTAATTT
CACAGCACTTATAACAATGGTTTTCGGTAGAGTAACAAATATTTTTCATC
TTGGATGATGCTTCTTCATAACAGCATTGTATACTTTTCAAAGAACTCTC
TACTGATTGGTACAAGAATGTCATCATTCATCATTGGACTCTTCCAGAAA
ATGTTCGTACATGGGGGGTTGAGGATATATAGTGGCCGGGGATAGTGAAA
AATCTACAAAATTTACCTTGTCCGGGGGGAGGGGGTAAGTTTACTCTGTT
TTTGATTATCCAGGGGGTCAACTAATGCTTGTCCGGGGGATAAGACCTGC
TGTCCGGGGGTTAAAAGTCACAATGTCCGTGGGACAAATTTCCAAAAAGT
GTTATATCCTCCACCCCCATATTCAAATTATTTCTGGAAAAGCCCATTCC
TCCTCCATTACTTTTCTAAGACTTTCCACCCATAGCGTTGGCGATATTTA
TTCAAACTGTGATACGGTAATTAGGGATGCAGCACATGAAAGGTCGACTA
TCATTCCTCTCCGATGCGAAATTAGCCCGCTATTAAGAGCTTCAGCGGGG
GTGACCGCCAATCCACCATCGGAGGACGAACGTCAAGGGTACGATTTTCT
GGCTCTATAAGGTGCACTATAATGTTTTATAAAGTTTCTTGTGCAAAATT
TTGGAAGGTCTGACTACCTTTGCTTCCCCCGGAAAAGAGAGTCAGAGTTA
CATAGTTATATTTCTTCCCTGAGAAGTATTTTAATTGTTCAAAAAAAGCA
ATAGAATGATTTCTTGTATTATTTTGATCATGCTTTATGAAAAAAAGCTA
TATACCAGAATCATGCTTCAATAAGTCACATTTCACCATGCATCAAATCG
AATTCCATCAATAATTTCCTTTCAGTTTACATAATTGATACTTTGGTTAT
ACAAAACAACCGATCAAATTTCGTCGTAATCATCTTTTAACCAATCACGT
CTTACCAAACATCACTCATTAATAGTAATCATCATCGTAATCATCATCGT
CGTCATCGTAATGATGATGTCGGCGATGGTGTCGTCTTGGGAAATAATAA
TTATTGACATGGTGATGATGACGGTGATGAGGATGGAAATCATCATCCTC
GTATCCAGACTTCCATCGCAAATAATCAGCAAAGTCAGCTGGGATTTGTA
ACCCAGCTGCTCCATTTCCTAAGTTCAAACCTGGTACAACTGGGCTTCCT
GCAGGTGCAACGTTATTGACTGCCTCTGTTCCTTGTCCTCCTTGTCCTCC
CAAAGCTGTGTTTGCTTGTGCAGGGTTATTCATGAATTGGTTTGGTAATG
GATACATATTCGGGTTTAATGCACCTCCGTTGTTGTTATTGTAATTCGAA
TCATCGGGCGATCCTCGAGACGCCATTCCACCCGCCATTCCATTTCCAAA
ATACTGAGCAGGCTCATTGCCATATCTCACCACAGCTGGATTCACATTCG
CTGGAGATAAGATTCTACCAAGATTTCCATGCGCACCAACAGCTCCAGCA
TATCCTAAATCTCCCAAAGTGCTGACGCGACTTGCTTCTGGTATGGTAGC
TGGTATATGACCAGGTTTGGCAACAACATTCAATCCAGCAGGTTTTGCGT
TGATTTTGACTCCTTCAGCATCTGCAGTGACTTGTATTTCAGGTCCTCGA
TCCTCCATATGGAAATGCGTTGGTTGTCCTGATTGAACAACTTCTTTCTC
TTGGCAATGTACCAAATGGTTGCTTAGATTTAAAATTACAAACATCCATA
ATATTTTTTGCCTTGTTTTTAAAACAAATCCCATATCTCTCTTCTTTTCT
TATAATATTCTTATTTTTGAATCATTAGTAAACAAATTTAGGTGAGAATT
AGTTACTTTTTAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072323-exon-scaffold_76-1575043694:117680..120047 | TCONS_00072323-exon-scaffold_76-1575043694:117680..120047 | Clytia hemisphaerica | exon |
| TCONS_00072323-exon-scaffold_76-1510915933:117680..120047 | TCONS_00072323-exon-scaffold_76-1510915933:117680..120047 | Clytia hemisphaerica | exon |
| TCONS_00072323-exon-scaffold_76-1491911889:117680..120047 | TCONS_00072323-exon-scaffold_76-1491911889:117680..120047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:117680..120047 - |
Blast
The following BLAST results are available for this feature:
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