TCONS_00072321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072321
Unique NameTCONS_00072321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072321 ID=TCONS_00072321|Name=TCONS_00072321|organism=Clytia hemisphaerica|type=transcript|length=1579bp
GAAATGTCAATATTTGGTTGGGGTAATCATGAAAACAATAGTCGTTCCGT
ATCAACCGTTTCAAACTTTCCGGACTGGGTTACACCGTTAAAAGCTTCTC
ACAGCATTGTAATTTGCCATTGGCAAAATAGGATTTGACAAAATCAGAAG
AAAAGTTTCACAAATATCTATTTCACAATTTTAGCATGAAGCCTGCAACA
GTCGCAATTTTTGCTGCTGTCTTGGCTTTATGTTCTATTGCAGAAGGCTA
CAAGATACCCAAAGCCTTATACCGACCAGGGCGGGTTATGGGTCCTCCTG
GCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGT
ACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGACCTCCTGGCAGAGACGA
AAGTAAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGGTC
CTCCTGGCAGAGACGAAAGTAAGCAAGATCCATTGTACCGACCAGGGCGA
GTTATGGGTCCTCCTGGCAGAGACGAAAGCGAGAAAAAGTTAAATTAGGA
TTACGTTGAAAGCTAGACAAAAAGgtcatTGTTTATGAcacaaagaagaa
agaaatggaAAGCAATTATTCGGGACTGATGATATCGAAGGGACAAAACA
TTTTATAGGGCGAACTATTTTAGGGTAGATTTTGTTAGCAATCATTCTGa
tatgtattttttatttcaatttctctAGTTTTGTAGTAAATAAAGAATTG
GGAAAATGATAACCTATTTTGGTACAAGCTTGATTACTAACAGAATAGTC
TGGCTGAAATACGATAAAACAGGGATGAA
Run BLAST on NCBI

transcript from alignment at scaffold_76:58715..61888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072321 ID=TCONS_00072321|Name=TCONS_00072321|organism=Clytia hemisphaerica|type=transcript|length=3174bp|location=Sequence derived from alignment at scaffold_76:58715..61888- (Clytia hemisphaerica)
GAAATGTCAATATTTGGTTGGGGTAATCATGAAAACAATAGTCGTTCCGT
ATCAACCGTTTCAAACTTTCCGGACTGGGTTACACCGTTAAAAGCTTCTC
ACAGCATTGTAATTTGCCATTGGCAAAATAGGATTTGACAAAATCAGAAG
AAAAGTTTCACAAATATCTATTTCACAATTTTAGCATGAAGCCTGCAACA
GTCGCAATTTTTGCTGCTGTCTTGGCTTTATGTTCTATTGCAGAAGGCTA
CAAGATACCCAAAGCCTTATACCGACCAGGGCGGGTTATGGGTCCTCCTG
GCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGT
ACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGACCTCCTGGCAGAGACGA
AAGTAAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGGTC
CTCCTGGCAGAGACGAAAGTAAGCAAGGTCCATTGTACCGACCAGGGCGA
GTTATGGGGCCTGTGGGGAGAGACGAAAGCGAGCAAGATCCAGAAGCCTT
ATACCGACCAGGGCGGGTTATGGGTCCTCCTGGCAGACACGAAAGTAAGC
AAGGTCCATTGTACCGACCAGGGCGAGTTATGGGGCCTGTGGGGAGAGAC
GAAAGCGAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGGGTTATGGG
TCCTCCTGGCAGACACGAAAGTAAGCAAGGTCCATTGTACCGACCAGGGC
GAGTTATGGGGCCTGTGGGGAGAGACGAAAGCGAGCAAGATCCAGAAGCC
TTATACCGACCAGGGCGGGTTATGGGTCCTCCTGGCAGACACGAAAGTAA
GCAAGGTCCATTGTACCGACCAGGGCGAGTTATGGGGCCTGTGGGGAGAG
ACGAAAGCGAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCGAGAAAAAGTTAAATT
AGGATTACGTTGAAAGCTAGACAAAAAGGTACCGATTCATATTTTCGTTC
AAAAAACAATTGAAGGGATTCTAATTTTATTGGTGTATAACATCAAGAGA
TTTGAAACGATACAGTTTTCAAAGTTTATTTTCCTTATTGGGGTGTCTTT
CAACTTCAACTGCTCCTCAAGATTACGAAAATATCAAAAATCAGGGGTAA
GTAGAAAACGTGGCCCACCTCTCTGGCCCGGGCCATATAGCCTACCCCAT
TGATATTGCTTTAAAAGCTGGTAAACGTCTTTTTTTATCAATTTACTAAT
AGCTTTGAACGTTTCTTTAGTAATAAAAATGTTTAAAAAGCTCTTAAAAC
TTCATGGAAGGTCAAATTTTATAATAACTATCATAAAGTCTTGAGTCAGT
ATTTTATAACTTTTAATCTCCCGTGCTCGCATGTGATGTATGAATTTCAT
TGGCTAATTTGAATCTATTTGAACCAATCATAAAGCGCCTAATGCGGCAA
TTATACACGAGGTCGAAAGTCAGATCACTGATGATCGAGTTCAAATTGCT
TCTACAACAGTGGGTAATCAAATAAGTGCAAATTGCATTGTGTGTGCGTG
CAAAATTGTGCAAAATATAATCCGATTTAAAGCAAGTATACCGATTATTT
GTGTTCAGACAACATTTTCATCTTTTTTTAAGTGGGCCAAAGGGTAGGCA
ATAGGGTAGGCAATATGGCCCGGAACAGGTTTTCTACTTACCCCAAAAAT
CAGTTTGAAAAAATTTCGCGTTTGACTTGAGTGGGATTAAAAATAACGGA
ATGAAACTCGATAGGGATTGATATTCCCATTATTAAAATCCAGTTAAGGA
GTTTCTTAAAATCAGTGTTTTTCATTTGTAATTGTGCGTAAATCCGATCA
ATCGCGATAGTCGGCTTCGATTTCCCGATTTTTCCGGTTTGATCTCCCGA
TTTGGTTTGCGTTTGCGCTCCCACTAGGATATACTCTTTAATATTTTATG
TTAGATATATTAAGAAAGGCTGACCCATGAAAATTACCGGAGTTTGCAGC
CGTCATTGCGGCTGTTTTATTGTTATTATAACTGGGGATTTTACTTTTTG
ATTATTATTTTTTTTTCAGGTCATTGTTTATGACACAAAGAAGAAAGAAA
TGGAAAGCAATTATTCGGGACTGATGATATCGAAGGGACAAAACATTTTA
TAGGGCGAACTATTTTAGGGTAGATTTTGTTAGCAATCATTCTGATATGT
ATTTTTTATTTCAATTTCTCTAGTTTTGTAGTAAATAAAGAATTGGGAAA
ATGATAACCTATTTTGGTACAAGCTTGATTACTAACAGAATAGTCTGGCT
GAAATACGATAAAACAGGGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044903XLOC_044903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072321-exon-scaffold_76-1575043694:60662..61888TCONS_00072321-exon-scaffold_76-1575043694:60662..61888Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1575043694:60061..60157TCONS_00072321-exon-scaffold_76-1575043694:60061..60157Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1575043694:58715..58969TCONS_00072321-exon-scaffold_76-1575043694:58715..58969Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1510915933:60662..61888TCONS_00072321-exon-scaffold_76-1510915933:60662..61888Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1510915933:60061..60157TCONS_00072321-exon-scaffold_76-1510915933:60061..60157Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1510915933:58715..58969TCONS_00072321-exon-scaffold_76-1510915933:58715..58969Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1491911889:60662..61888TCONS_00072321-exon-scaffold_76-1491911889:60662..61888Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1491911889:60061..60157TCONS_00072321-exon-scaffold_76-1491911889:60061..60157Clytia hemisphaericaexon
TCONS_00072321-exon-scaffold_76-1491911889:58715..58969TCONS_00072321-exon-scaffold_76-1491911889:58715..58969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:58715..61888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194576	0.0587375	0.550773	0.215538	0.0349224	0.20735	4.04423	4.44971	58.3445	31.8187	52.7328	42.0941	4.57237	2.93418	20.5321	23.8127	16.3109	14.2978	0.896302	1.3708	70.3283	100.801	248.642	269.795	80.3947	80.1715	2896.19	3014.2	11.7701	10.7816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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