|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072320 ID=TCONS_00072320|Name=TCONS_00072320|organism=Clytia hemisphaerica|type=transcript|length=1645bp
GAAATGTCAATATTTGGTTGGGGTAATCATGAAAACAATAGTCGTTCCGT
ATCAACCGTTTCAAACTTTCCGGACTGGGTTACACCGTTAAAAGCTTCTC
ACAGCATTGTAATTTGCCATTGGCAAAATAGGATTTGACAAAATCAGAAG
AAAAGTTTCACAAATATCTATTTCACAATTTTAGCATGAAGCCTGCAACA
GTCGCAATTTTTGCTGCTGTCTTGGCTTTATGTTCTATTGCAGAAGGCTA
CAAGATACCCAAAGCCTTATACCGACCAGGGCGGGTTATGGGTCCTCCTG
GCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGT
ACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGACCTCCTGGCAGAGACGA
AAGTAAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGGTC
CTCCTGGCAGAGACGAAAGTAAGCAAGATCCAGAAGCCTTATACCGACCA
GGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATT
GTACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCGAGA
AAAAGTTAAATTAGGATTACGTTGAAAGCTAGACAAAAAGgtcatTGTTT
ATGAcacaaagaagaaagaaatggaAAGCAATTATTCGGGACTGATGATA
TCGAAGGGACAAAACATTTTATAGGGCGAACTATTTTAGGGTAGATTTTG
TTAGCAATCATTCTGatatgtattttttatttcaatttctctAGTTTTGT
AGTAAATAAAGAATTGGGAAAATGATAACCTATTTTGGTACAAGCTTGAT
TACTAACAGAATAGTCTGGCTGAAATACGATAAAACAGGGATGAA Run BLAST on NCBI protein sequence of TCONS_00072320-protein >TCONS_00072320-protein ID=TCONS_00072320-protein|Name=TCONS_00072320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MKPATVAIFAAVLALCSIAEGYKIPKALYRPGRVMGPPGRDESEQDPLYR
PGRVMGPPGRDESEQDPLYRPGRVMGPPGRDESKQDPLYRPGRVMGPPGR
DESKQDPLYRPGRVMGPPGRDESKQDPLYRPGRVMGPPGRDESKQDPLYR
PGRVMGPPGRDESKQDPLYRPGRVMGPPGRDESKQDPLYRPGRVMGPPGR
DESKQDPLYRPGRVMGPPGRDESKQDPLYRPGRVMGPPGRDESKQDPLYR
PGRVMGPPGRDESKQDPLYRPGRVMGPPGRDESEQDPLYRPGRVMGPPGR
DESKQDPLYRPGRVMGPPGRDESKQDPEALYRPGRVMGPPGRDESKQDPE
ALYRPGRVMGPPGRDESEQDPLYRPGRVMGPPGRDESEKKLN Run BLAST on NCBI transcript from alignment at scaffold_76:58715..61888- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072320 ID=TCONS_00072320|Name=TCONS_00072320|organism=Clytia hemisphaerica|type=transcript|length=3174bp|location=Sequence derived from alignment at scaffold_76:58715..61888- (Clytia hemisphaerica)
GAAATGTCAATATTTGGTTGGGGTAATCATGAAAACAATAGTCGTTCCGT
ATCAACCGTTTCAAACTTTCCGGACTGGGTTACACCGTTAAAAGCTTCTC
ACAGCATTGTAATTTGCCATTGGCAAAATAGGATTTGACAAAATCAGAAG
AAAAGTTTCACAAATATCTATTTCACAATTTTAGCATGAAGCCTGCAACA
GTCGCAATTTTTGCTGCTGTCTTGGCTTTATGTTCTATTGCAGAAGGCTA
CAAGATACCCAAAGCCTTATACCGACCAGGGCGGGTTATGGGTCCTCCTG
GCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGT
ACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGA
AAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTG
GCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGG
ACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGT
ACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTAAGCAA
GATCCATTGTACCGACCAGGACGAGTTATGGGACCTCCTGGCAGAGACGA
AAGTAAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGGTC
CTCCTGGCAGAGACGAAAGTAAGCAAGGTCCATTGTACCGACCAGGGCGA
GTTATGGGGCCTGTGGGGAGAGACGAAAGCGAGCAAGATCCAGAAGCCTT
ATACCGACCAGGGCGGGTTATGGGTCCTCCTGGCAGACACGAAAGTAAGC
AAGGTCCATTGTACCGACCAGGGCGAGTTATGGGGCCTGTGGGGAGAGAC
GAAAGCGAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGGGTTATGGG
TCCTCCTGGCAGACACGAAAGTAAGCAAGGTCCATTGTACCGACCAGGGC
GAGTTATGGGGCCTGTGGGGAGAGACGAAAGCGAGCAAGATCCAGAAGCC
TTATACCGACCAGGGCGGGTTATGGGTCCTCCTGGCAGACACGAAAGTAA
GCAAGGTCCATTGTACCGACCAGGGCGAGTTATGGGGCCTGTGGGGAGAG
ACGAAAGCGAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATG
GGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGG
GCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCGAGAAAAAGTTAAATT
AGGATTACGTTGAAAGCTAGACAAAAAGGTACCGATTCATATTTTCGTTC
AAAAAACAATTGAAGGGATTCTAATTTTATTGGTGTATAACATCAAGAGA
TTTGAAACGATACAGTTTTCAAAGTTTATTTTCCTTATTGGGGTGTCTTT
CAACTTCAACTGCTCCTCAAGATTACGAAAATATCAAAAATCAGGGGTAA
GTAGAAAACGTGGCCCACCTCTCTGGCCCGGGCCATATAGCCTACCCCAT
TGATATTGCTTTAAAAGCTGGTAAACGTCTTTTTTTATCAATTTACTAAT
AGCTTTGAACGTTTCTTTAGTAATAAAAATGTTTAAAAAGCTCTTAAAAC
TTCATGGAAGGTCAAATTTTATAATAACTATCATAAAGTCTTGAGTCAGT
ATTTTATAACTTTTAATCTCCCGTGCTCGCATGTGATGTATGAATTTCAT
TGGCTAATTTGAATCTATTTGAACCAATCATAAAGCGCCTAATGCGGCAA
TTATACACGAGGTCGAAAGTCAGATCACTGATGATCGAGTTCAAATTGCT
TCTACAACAGTGGGTAATCAAATAAGTGCAAATTGCATTGTGTGTGCGTG
CAAAATTGTGCAAAATATAATCCGATTTAAAGCAAGTATACCGATTATTT
GTGTTCAGACAACATTTTCATCTTTTTTTAAGTGGGCCAAAGGGTAGGCA
ATAGGGTAGGCAATATGGCCCGGAACAGGTTTTCTACTTACCCCAAAAAT
CAGTTTGAAAAAATTTCGCGTTTGACTTGAGTGGGATTAAAAATAACGGA
ATGAAACTCGATAGGGATTGATATTCCCATTATTAAAATCCAGTTAAGGA
GTTTCTTAAAATCAGTGTTTTTCATTTGTAATTGTGCGTAAATCCGATCA
ATCGCGATAGTCGGCTTCGATTTCCCGATTTTTCCGGTTTGATCTCCCGA
TTTGGTTTGCGTTTGCGCTCCCACTAGGATATACTCTTTAATATTTTATG
TTAGATATATTAAGAAAGGCTGACCCATGAAAATTACCGGAGTTTGCAGC
CGTCATTGCGGCTGTTTTATTGTTATTATAACTGGGGATTTTACTTTTTG
ATTATTATTTTTTTTTCAGGTCATTGTTTATGACACAAAGAAGAAAGAAA
TGGAAAGCAATTATTCGGGACTGATGATATCGAAGGGACAAAACATTTTA
TAGGGCGAACTATTTTAGGGTAGATTTTGTTAGCAATCATTCTGATATGT
ATTTTTTATTTCAATTTCTCTAGTTTTGTAGTAAATAAAGAATTGGGAAA
ATGATAACCTATTTTGGTACAAGCTTGATTACTAACAGAATAGTCTGGCT
GAAATACGATAAAACAGGGATGAA Coding sequence (CDS) from alignment at scaffold_76:58715..61888- >TCONS_00072320 ID=TCONS_00072320|Name=TCONS_00072320|organism=Clytia hemisphaerica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_76:58715..61888- (Clytia hemisphaerica)
ATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGA
GACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATGGGTCC
TCCTGGCAGAGACGAAAGCGAGAAAAAGTTAAATTAGATGAAGCCTGCAA
CAGTCGCAATTTTTGCTGCTGTCTTGGCTTTATGTTCTATTGCAGAAGGC
TACAAGATACCCAAAGCCTTATACCGACCAGGGCGGGTTATGGGTCCTCC
TGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTA
TGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCA
GGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATT
GTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGC
AAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGAC
GAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCC
TGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTA
TGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCA
GGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATT
GTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGC
AAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGAC
GAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCC
TGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTA
TGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCA
GGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCATT
GTACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTAAGC
AAGATCCATTGTACCGACCAGGACGAGTTATGGGACCTCCTGGCAGAGAC
GAAAGTAAGCAAGATCCAGAAGCCTTATACCGACCAGGGCGAGTTATGGG
TCCTCCTGGCAGAGACGAAAGTAAGCAAGATCCAGAAGCCTTATACCGAC
CAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCAAGATCCA
TTGTACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCGA
GAAAAAGTTAAATTAGATGAAGCCTGCAACAGTCGCAATTTTTGCTGCTG
TCTTGGCTTTATGTTCTATTGCAGAAGGCTACAAGATACCCAAAGCCTTA
TACCGACCAGGGCGGGTTATGGGTCCTCCTGGCAGAGACGAAAGTGAGCA
AGATCCATTGTACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACG
AAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTATGGGTCCTCCT
GGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTAT
GGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAG
GACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTG
TACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCA
AGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACG
AAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCT
GGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTAT
GGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTGTACCGACCAG
GACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCAAGATCCATTG
TACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACGAAAGCAAGCA
AGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCTGGCAGAGACG
AAAGCAAGCAAGATCCATTGTACCGACCAGGACGAGTTATGGGTCCTCCT
GGCAGAGACGAAAGTGAGCAAGATCCATTGTACCGACCAGGGCGAGTTAT
GGGTCCTCCTGGCAGAGACGAAAGTAAGCAAGATCCATTGTACCGACCAG
GACGAGTTATGGGACCTCCTGGCAGAGACGAAAGTAAGCAAGATCCAGAA
GCCTTATACCGACCAGGGCGAGTTATGGGTCCTCCTGGCAGAGACGAAAG
TAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072320-exon-scaffold_76-1575043694:60662..61888 | TCONS_00072320-exon-scaffold_76-1575043694:60662..61888 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1575043694:60061..60223 | TCONS_00072320-exon-scaffold_76-1575043694:60061..60223 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1575043694:58715..58969 | TCONS_00072320-exon-scaffold_76-1575043694:58715..58969 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1510915933:60662..61888 | TCONS_00072320-exon-scaffold_76-1510915933:60662..61888 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1510915933:60061..60223 | TCONS_00072320-exon-scaffold_76-1510915933:60061..60223 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1510915933:58715..58969 | TCONS_00072320-exon-scaffold_76-1510915933:58715..58969 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1491911889:60662..61888 | TCONS_00072320-exon-scaffold_76-1491911889:60662..61888 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1491911889:60061..60223 | TCONS_00072320-exon-scaffold_76-1491911889:60061..60223 | Clytia hemisphaerica | exon |
| TCONS_00072320-exon-scaffold_76-1491911889:58715..58969 | TCONS_00072320-exon-scaffold_76-1491911889:58715..58969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:58715..61888 - |
Blast
The following BLAST results are available for this feature:
|
