|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072314 ID=TCONS_00072314|Name=TCONS_00072314|organism=Clytia hemisphaerica|type=transcript|length=1699bp
caaaacatctttCTGTATAATtcaaatatattgtaaagaagGAAATATAA
CCCGGATtcatttgccaaaattattCTTTGTTTTAGAGGAGAGTAGAGAA
CTTTCAACAATGAGGTTCCAGCAATGGCAAATCTATTTCACTGTGTTGCA
ACTTTACCATTTGGTATATTGCCAAGAGAAAGAAGTTGTTCAATCAGGAC
AACCAACACATTTCCATATGGAGGATCGAGGACCTGAAATACAAGTCACT
GCAGATTCCGATGGAGTCAAAATCAATGCAAAACCTGCTGGATTGAATGT
TGTTGCCAAACCTGGTCATATACCAGCTACCATACCCCACGAGCATATTA
TATCTACTTTGGTAGGGCATGTGCATCCCTACAATATGCTTGAAACACCT
CACTACCATCCACAACTCGTCCACTACGCACCAGAACCAATGGCTTTCCA
AGCACCAATCAACGGACTTGCTTACTACGGCGGTGATACACGCTCTCACA
TACTTTCACCAGCGTATCTACCAGGTTTGGATTACGGCGATTATCATACT
GGTTTGAGTGATTTTTTAGTAAATCAACATATACCGCATCATCACCATAG
CTTTACAGCGCATCACGGTCATTTTAATCATCACCGCAACCACCATGTTA
ACGGCCACTATGGTATAGGAATACACAAACCTTACGATCCCTGGCCTACT
TATCATGGACCATTTGGCCACGGATACCATCATCACCATCATCACTGGCC
GCACCATGTTTACAATGTCTATCATAATCATTTCAACCCATATTATGATG
ATGAAGTTGCTGCTGAATATTACAAAAGATCCAAAGTCAATAACGAGAAG
ATTCAAACTACTGAAAAAAAACCAGGAAGATTTCGAAACTAGGAACTCTT
ATCAAGAGCAAAGCTTACCGATCAAGATAAACTATAGAATTGAGCAAACG
TTAATATATATCACAAACGTACTAACTGATTCGGTTCGGTGGCTATGATT
CTATGAAAAAACTATTTACAGAAAGTTACCCTGAGTCAATTAGCTGGAAA
CAGATCCGGCTTTAGGAACTTCTGGTCTGGTGATATGGAgtaaaaatggt
tgaaatgtTTGTAGTGCCAATTGCAACTCAATGGCAGGATAATGTTTACT
AGGGAGGAAGACAGAACGAAATCGAACAAAACTAGCtttattaagcagat
attcgacaagaaaaatcagaTATCGAAAAATGTTCAGTGTAGCTTGATGA
TATTCGATGAAGCGAAACTGATCCGGAATATCATCAAGCGAGACTGAATA
TTTCCGATATCCGATTTTTTCGCGTTGAATATATGGTTTATCGTTCACTC
AAAAGCAGAAAATATTCAcccttttaaattttctcagTCTCTTTCTCATT
CTTTGGAAATGAAAGCTTATTTTTCTAGCAATCTTTAATCATTTGTTTAG
TTGTTTTTTTACTCTAATTGCTATTGTAAttctaattcatgatattcatg
acgtaatgttttgtaCGGAAAcgccccggtttttgccagtagtggcaaat
ttaaacaacttttttctcgtttaaaatttgccactactggtgAAAACCGG
AGTGTTTCTGtacaaaacattacgtcatgaatatcatgaattttattata
ttatatcTTTCAGAAAAGAATCGTTCAATACTGACGCCCTTAACCAAGG Run BLAST on NCBI protein sequence of TCONS_00072314-protein >TCONS_00072314-protein ID=TCONS_00072314-protein|Name=TCONS_00072314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
KTSFCIIQIYCKEGNITRIHLPKLFFVLEESRELSTMRFQQWQIYFTVLQ
LYHLVYCQEKEVVQSGQPTHFHMEDRGPEIQVTADSDGVKINAKPAGLNV
VAKPGHIPATIPHEHIISTLVGHVHPYNMLETPHYHPQLVHYAPEPMAFQ
APINGLAYYGGDTRSHILSPAYLPGLDYGDYHTGLSDFLVNQHIPHHHHS
FTAHHGHFNHHRNHHVNGHYGIGIHKPYDPWPTYHGPFGHGYHHHHHHWP
HHVYNVYHNHFNPYYDDEVAAEYYKRSKVNNEKIQTTEKKPGRFRN Run BLAST on NCBI transcript from alignment at scaffold_76:115718..117469+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072314 ID=TCONS_00072314|Name=TCONS_00072314|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at scaffold_76:115718..117469+ (Clytia hemisphaerica)
caaaacatctttCTGTATAATtcaaatatattgtaaagaagGAAATATAA
CCCGGATtcatttgccaaaattattCTTTGTTTTAGAGGAGAGTAGAGAA
CTTTCAACAATGAGGTTCCAGCAATGGCAAATCTATTTCACTGTGTTGCA
ACTTTACCATTTGGTATATTGCCAAGAGAAAGAAGTTGTTCAATCAGGAC
AACCAACACATTTCCATATGGAGGATCGAGGACCTGAAATACAAGTCACT
GCAGATTCCGATGGAGTCAAAATCAATGCAAAACCTGCTGGATTGAATGT
TGTTGCCAAACCTGGTCATATACCAGCTACCATACCCCACGAGCATATTA
TATCTACTTTGGTAGGGCATGTGCATCCCTACAATATGCTTGAAACACCT
CACTACCATCCACAACTCGTCCACTACGCACCAGAACCAATGGCTTTCCA
AGCACCAATCAACGGACTTGCTTACTACGGCGGTGATACACGCTCTCACA
TACTCTCACCAGCGTATCTACCAGCTTTGGATTACANGATACACGCTCTC
ACATACTTTCACCAGCGTATCTACCAGGTTTGGATTACGGCGATTATCAT
ACTGGTTTGAGTGATTTTTTAGTAAATCAACATATACCGCATCATCACCA
TAGCTTTACAGCGCATCACGGTCATTTTAATCATCACCGCAACCACCATG
TTAACGGCCACTATGGTATAGGAATACACAAACCTTACGATCCCTGGCCT
ACTTATCATGGACCATTTGGCCACGGATACCATCATCACCATCATCACTG
GCCGCACCATGTTTACAATGTCTATCATAATCATTTCAACCCATATTATG
ATGATGAAGTTGCTGCTGAATATTACAAAAGATCCAAAGTCAATAACGAG
AAGATTCAAACTACTGAAAAAAAACCAGGAAGATTTCGAAACTAGGAACT
CTTATCAAGAGCAAAGCTTACCGATCAAGATAAACTATAGAATTGAGCAA
ACGTTAATATATATCACAAACGTACTAACTGATTCGGTTCGGTGGCTATG
ATTCTATGAAAAAACTATTTACAGAAAGTTACCCTGAGTCAATTAGCTGG
AAACAGATCCGGCTTTAGGAACTTCTGGTCTGGTGATATGGAgtaaaaat
ggttgaaatgtTTGTAGTGCCAATTGCAACTCAATGGCAGGATAATGTTT
ACTAGGGAGGAAGACAGAACGAAATCGAACAAAACTAGCtttattaagca
gatattcgacaagaaaaatcagaTATCGAAAAATGTTCAGTGTAGCTTGA
TGATATTCGATGAAGCGAAACTGATCCGGAATATCATCAAGCGAGACTGA
ATATTTCCGATATCCGATTTTTTCGCGTTGAATATATGGTTTATCGTTCA
CTCAAAAGCAGAAAATATTCAcccttttaaattttctcagTCTCTTTCTC
ATTCTTTGGAAATGAAAGCTTATTTTTCTAGCAATCTTTAATCATTTGTT
TAGTTGTTTTTTTACTCTAATTGCTATTGTAAttctaattcatgatattc
atgacgtaatgttttgtaCGGAAAcgccccggtttttgccagtagtggca
aatttaaacaacttttttctcgtttaaaatttgccactactggtgAAAAC
CGGAGTGTTTCTGtacaaaacattacgtcatgaatatcatgaattttatt
atattatatcTTTCAGAAAAGAATCGTTCAATACTGACGCCCTTAACCAA
GG Coding sequence (CDS) from alignment at scaffold_76:115718..117469+ >TCONS_00072314 ID=TCONS_00072314|Name=TCONS_00072314|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_76:115718..117469+ (Clytia hemisphaerica)
aaaacatctttCTGTATAATtcaaatatattgtaaagaagGAAATATAAC
CCGGATtcatttgccaaaattattCTTTGTTTTAGAGGAGAGTAGAGAAC
TTTCAACAATGAGGTTCCAGCAATGGCAAATCTATTTCACTGTGTTGCAA
CTTTACCATTTGGTATATTGCCAAGAGAAAGAAGTTGTTCAATCAGGACA
ACCAACACATTTCCATATGGAGGATCGAGGACCTGAAATACAAGTCACTG
CAGATTCCGATGGAGTCAAAATCAATGCAAAACCTGCTGGATTGAATGTT
GTTGCCAAACCTGGTCATATACCAGCTACCATACCCCACGAGCATATTAT
ATCTACTTTGGTAGGGCATGTGCATCCCTACAATATGCTTGAAACACCTC
ACTACCATCCACAACTCGTCCACTACGCACCAGAACCAATGGCTTTCCAA
GCACCAATCAACGGACTTGCTTACTACGGCGGTGATACACGCTCTCACAT
ACTTTCACCAGCGTATCTACCAGGTTTGGATTACGGCGATTATCATACTG
GTTTGAGTGATTTTTTAGTAAATCAACATATACCGCATCATCACCATAGC
TTTACAGCGCATCACGGTCATTTTAATCATCACCGCAACCACCATGTTAA
CGGCCACTATGGTATAGGAATACACAAACCTTACGATCCCTGGCCTACTT
ATCATGGACCATTTGGCCACGGATACCATCATCACCATCATCACTGGCCG
CACCATGTTTACAATGTCTATCATAATCATTTCAACCCATATTATGATGA
TGAAGTTGCTGCTGAATATTACAAAAGATCCAAAGTCAATAACGAGAAGA
TTCAAACTACTGAAAAAAAACCAGGAAGATTTCGAAACTAGaaaacatct
ttCTGTATAATtcaaatatattgtaaagaagGAAATATAACCCGGATtca
tttgccaaaattattCTTTGTTTTAGAGGAGAGTAGAGAACTTTCAACAA
TGAGGTTCCAGCAATGGCAAATCTATTTCACTGTGTTGCAACTTTACCAT
TTGGTATATTGCCAAGAGAAAGAAGTTGTTCAATCAGGACAACCAACACA
TTTCCATATGGAGGATCGAGGACCTGAAATACAAGTCACTGCAGATTCCG
ATGGAGTCAAAATCAATGCAAAACCTGCTGGATTGAATGTTGTTGCCAAA
CCTGGTCATATACCAGCTACCATACCCCACGAGCATATTATATCTACTTT
GGTAGGGCATGTGCATCCCTACAATATGCTTGAAACACCTCACTACCATC
CACAACTCGTCCACTACGCACCAGAACCAATGGCTTTCCAAGCACCAATC
AACGGACTTGCTTACTACGGCGGTGATACACGCTCTCACATACTTTCACC
AGCGTATCTACCAGGTTTGGATTACGGCGATTATCATACTGGTTTGAGTG
ATTTTTTAGTAAATCAACATATACCGCATCATCACCATAGCTTTACAGCG
CATCACGGTCATTTTAATCATCACCGCAACCACCATGTTAACGGCCACTA
TGGTATAGGAATACACAAACCTTACGATCCCTGGCCTACTTATCATGGAC
CATTTGGCCACGGATACCATCATCACCATCATCACTGGCCGCACCATGTT
TACAATGTCTATCATAATCATTTCAACCCATATTATGATGATGAAGTTGC
TGCTGAATATTACAAAAGATCCAAAGTCAATAACGAGAAGATTCAAACTA
CTGAAAAAAAACCAGGAAGATTTCGAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072314-exon-scaffold_76-1491911889:115718..116216 | TCONS_00072314-exon-scaffold_76-1491911889:115718..116216 | Clytia hemisphaerica | exon |
| TCONS_00072314-exon-scaffold_76-1510915933:115718..116216 | TCONS_00072314-exon-scaffold_76-1510915933:115718..116216 | Clytia hemisphaerica | exon |
| TCONS_00072314-exon-scaffold_76-1575043694:115718..116216 | TCONS_00072314-exon-scaffold_76-1575043694:115718..116216 | Clytia hemisphaerica | exon |
| TCONS_00072314-exon-scaffold_76-1491911889:116270..117469 | TCONS_00072314-exon-scaffold_76-1491911889:116270..117469 | Clytia hemisphaerica | exon |
| TCONS_00072314-exon-scaffold_76-1510915933:116270..117469 | TCONS_00072314-exon-scaffold_76-1510915933:116270..117469 | Clytia hemisphaerica | exon |
| TCONS_00072314-exon-scaffold_76-1575043694:116270..117469 | TCONS_00072314-exon-scaffold_76-1575043694:116270..117469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:115718..117469 + |
Blast
The following BLAST results are available for this feature:
|
