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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072310 ID=TCONS_00072310|Name=TCONS_00072310|organism=Clytia hemisphaerica|type=transcript|length=725bp
tccatttttgacccctaaactaccattgtgcaaagtttcatgcttttacg
cCTTTGTGCACAATATTTGCACAACTAGACCGTActactgaggaaaaaag
ttccaacggAGCTCTGAGACGGGTGTATTTCAATTACAGGTGCTGGCAAG
TCAAAGGCAAGTTTGGAAGAATTCGTTTCCAATTCAACCCGTTGTCAACT
NCTGGCAAGTCAAAGGCAAGTTTGGAAGAATTCGTTTCCAATTCAACCCG
TTGTCAACATTTCTTGGTGCTTTCGTCTTATGGGCAATCCTCATATGGGC
CATCACTGATGAGGAGACCAGCATTGAAAAGATCAATGTTGCGCGACGGT
GGATCACTGATAAATGCACGTgGTTTTACATTGGCAGTCAATTTATTTGG
GTTATCTTGATcatttatatttatttcaaatatgGACATATCAAACTTGG
ATTATCAACAGATCAGGTAGAATACGGCGATTTCGATTATTTCGCCATGA
TATTTACAACCGGTATATGCAATGGATTGTTTTATGATGGTGCAAGCGCT
CCCATCGCTGGATACAACGATTCAACCGATAATTTGCTTATCTACAAAGG
AAAGAGTAACCATATTACGCAAGCGCAGAACTCGTTGAATGTTGTCATGT
TTCATTGGGGTTTCCATGGTTTCAGCGTGTACGTTTTACCATGTCTCCTC
TTGTCTGTACTGTGCTATCGTAAAG Run BLAST on NCBI transcript from alignment at scaffold_76:73890..76095+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072310 ID=TCONS_00072310|Name=TCONS_00072310|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at scaffold_76:73890..76095+ (Clytia hemisphaerica)
tccatttttgacccctaaactaccattgtgcaaagtttcatgcttttacg
cCTTTGTGCACAATATTTGCACAACTAGACCGTActactgaggaaaaaag
ttccaacggAGCTCTGAGACGGGTGTATTTCAATTACAGGTGCTGGCAAG
TCAAAGGCAAGTTTGGAAGAATTCGTTTCCAATTCAACCCGTTGTCAACT
NCTGGCAAGTCAAAGGCAAGTTTGGAAGAATTCGTTTCCAATTCAACCCG
TTGTCAACATTTCTTGGTGCTTTCGTCTTATGGGCAATCCTCATATGGGC
CATCACTGATGAGGAGACCAGCATTGAAAAGATCAATGTTGCGCGACGGT
GGATCACTGATAAATGCACGTggttagtttaatttttttcttctgtatGT
TAGTCAGGCCCGGTGGAaccggggagactggggagacttcggcctcccca
cttttgagcaaatgagactTTTTTTCTCGAATGCCTAGACtagcaaattt
tatctcattttaagCCTTCAGccaaagagatagaaaattttctatctctt
tgcttcagcctccccactttaacgGTTGTTCCGTCGGGCCTAGTAGTTAG
TAGGGTTGTTAAGAGAACGTTCATAGGTGCAAGACTGGTCAAGCAATTTT
CCTTCTTGGATATTATGTAGATAGCTGCAAGAtgaaactttaaaataaaa
ttcgaaagtttttaaattttatttctcGTTTCAGGTTTTACATTGGCAGT
CAATTTATTTGGGTTATCTTGATcatttatatttatttcaaatatgGACA
TATCAAACTTGGTAAGTATTCAGTATTTTTTGTTGTGTGAAATTGAATTC
TGGTTCACTTTCAGCTTGTTTGAATGggcattccattttatatccatttt
tccaaggggtaaagaggtattctaaaatttccaaggggtaaaaaactgat
tttagttAGTATAGAgtcactttaaggtatgtaaagaatttttccaaggt
tttttttgcaaattttgtcattttcccTATATGCATTTtcaatggaatag
cccattattGAGCAACTTTCGAAAAGACATccgttaaagggacataaaga
aattgacgaaatttgtaaacaaaccgtatgcagcgggatacaaaatcaaa
acaaatgtcacatgttaaaataaaaaatcaaaacaaatatggttgatttt
gatttttctttttggacacgtgattttgattgttctctttaatgacacgt
ggtttgcgcaatgCTTACATTTTTNtttttggacacgtgattttgattgt
tctctttaatgacacgtggtttgcgcaatgtttacattttactactttta
tgtccctttaatacAGTAATTAAGAACGCTTTGGTTCCATTCTTTTTTCA
CAGGATTATCAACAGATCAGGTAGAATACGGCGATTTCGATTATTTCGCC
ATGATATTTACAACCGGTATATGCAATGGATTGTTTTATGATGGTGCAAG
CGCTCCCATCGCTGGATACAACGATTCAACCGATAATTTGCTTATCTACA
AAGGAAAGTACGCTGAAAAGTATTAGGCTTTtccatttaatattcatcca
tACATAGAGTtggatgaaaaattttttcttgaattgtGCGGATATCTCCt
agaagaaaagtaaaatttgcaaaaaaataaaactcctGGAATTCTATTGG
CCTTGGAAAAAATTCGACTTTAAAGTTAGGATGGGCTAAAAGCAATATTT
TACCCTTTTAAAAGTTCAGCATAGCTTTAAGCcccttgaaatttcaaaaa
acttcctTCGAATCCTTGAAATATAAATGAACATATCACTTCATAcctgg
aaaaagaaaataatgtgcactttttaaactttggtaaGCTTTACTATATC
ATTCGTTTTCAACTTTTCGGAGCTTTTAAACGCATAAATTTCCAGAAACA
GTAAAGAAGCTAGACCAGCATCACCCATAATCACATCCTGATACTTTTAA
AGAAATTGCTGGCCAAAATTTAGTTCATTCATGCGTTAAATCAAAATTCT
AAGGAAACACTtaccatttttgtttcttctttagGAGTAACCATATTACG
CAAGCGCAGAACTCGTTGAATGTTGTCATGTTTCATTGGGGTTTCCATGG
TTTCAGCGTGTACGTTTTACCATGTCTCCTCTTGTCTGTACTGTGCTATC
GTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072310-exon-scaffold_76-1491911889:73890..74261 | TCONS_00072310-exon-scaffold_76-1491911889:73890..74261 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1510915933:73890..74261 | TCONS_00072310-exon-scaffold_76-1510915933:73890..74261 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1575043694:73890..74261 | TCONS_00072310-exon-scaffold_76-1575043694:73890..74261 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1491911889:74624..74700 | TCONS_00072310-exon-scaffold_76-1491911889:74624..74700 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1510915933:74624..74700 | TCONS_00072310-exon-scaffold_76-1510915933:74624..74700 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1575043694:74624..74700 | TCONS_00072310-exon-scaffold_76-1575043694:74624..74700 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1491911889:75293..75446 | TCONS_00072310-exon-scaffold_76-1491911889:75293..75446 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1510915933:75293..75446 | TCONS_00072310-exon-scaffold_76-1510915933:75293..75446 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1575043694:75293..75446 | TCONS_00072310-exon-scaffold_76-1575043694:75293..75446 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1491911889:75974..76095 | TCONS_00072310-exon-scaffold_76-1491911889:75974..76095 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1510915933:75974..76095 | TCONS_00072310-exon-scaffold_76-1510915933:75974..76095 | Clytia hemisphaerica | exon |
| TCONS_00072310-exon-scaffold_76-1575043694:75974..76095 | TCONS_00072310-exon-scaffold_76-1575043694:75974..76095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:73890..76095 + |
Blast
The following BLAST results are available for this feature:
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