TCONS_00072309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072309
Unique NameTCONS_00072309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072309 ID=TCONS_00072309|Name=TCONS_00072309|organism=Clytia hemisphaerica|type=transcript|length=401bp
GTCGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGA
CCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTTTCGTCTCT
GCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCAC
TTTCGTCTCTGCCAGGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCT
TTGGGTATCTTGTAGCCTTCTGCAATAGAACATAAAGCCAAGACAGCAGC
AAAAATTGCGACTGTTGCAGGCTTCATGCTAAAATTGTGAAATAGATATT
TGTGAAACTTTTCTTCTGATTTTGTCAAATCCTATTTTGCCAATGGCAAA
TTACAATGCTGTGAGAAGCTTTTAACGGTGTAACCCAGTCCGGAAAGTTT
G
Run BLAST on NCBI

transcript from alignment at scaffold_76:60455..61827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072309 ID=TCONS_00072309|Name=TCONS_00072309|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at scaffold_76:60455..61827+ (Clytia hemisphaerica)
GTCGGTATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGC
CCCATAACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCT
GCCAGGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTT
GCTCGCTTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTAC
AATGGACCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCC
TGGTCGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAG
GTCCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTACTTTCGTCT
CTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTC
ACTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATG
GATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGT
CGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAAC
TCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAG
GACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCT
CTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTT
GCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATG
GATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGT
CGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAAC
TCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAG
GACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCT
CTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTT
GCTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATG
GATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGT
CGGTACAATGGATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAAC
CCGCCCTGGTCGGTATAAGGCTTTGGGTATCTTGTAGCCTTCTGCAATAG
AACATAAAGCCAAGACAGCAGCAAAAATTGCGACTGTTGCAGGCTTCATG
CTAAAATTGTGAAATAGATATTTGTGAAACTTTTCTTCTGATTTTGTCAA
ATCCTATTTTGCCAATGGCAAATTACAATGCTGTGAGAAGCTTTTAACGG
TGTAACCCAGTCCGGAAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044898XLOC_044898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072309-exon-scaffold_76-1491911889:60455..60465TCONS_00072309-exon-scaffold_76-1491911889:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:60455..60465TCONS_00072309-exon-scaffold_76-1510915933:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:60455..60465TCONS_00072309-exon-scaffold_76-1575043694:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1491911889:60718..60754TCONS_00072309-exon-scaffold_76-1491911889:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:60718..60754TCONS_00072309-exon-scaffold_76-1510915933:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:60718..60754TCONS_00072309-exon-scaffold_76-1575043694:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1491911889:61475..61827TCONS_00072309-exon-scaffold_76-1491911889:61475..61827Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:61475..61827TCONS_00072309-exon-scaffold_76-1510915933:61475..61827Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:61475..61827TCONS_00072309-exon-scaffold_76-1575043694:61475..61827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:60455..61827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.240916	0.642596	0	0	0	10.1813	12.2958	71.8826	34.0696	75.5246	52.0114	5.89001	4.62181	22.9559	26.8711	20.5296	19.1634	1.33288	1.26263	63.7673	78.1477	191.496	214.946	284.576	275.477	2337.72	2383.91	9.82973	12.2985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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