TCONS_00072309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072309
Unique NameTCONS_00072309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072309 ID=TCONS_00072309|Name=TCONS_00072309|organism=Clytia hemisphaerica|type=transcript|length=401bp
GTCGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGA
CCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTTTCGTCTCT
GCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCAC
TTTCGTCTCTGCCAGGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCT
TTGGGTATCTTGTAGCCTTCTGCAATAGAACATAAAGCCAAGACAGCAGC
AAAAATTGCGACTGTTGCAGGCTTCATGCTAAAATTGTGAAATAGATATT
TGTGAAACTTTTCTTCTGATTTTGTCAAATCCTATTTTGCCAATGGCAAA
TTACAATGCTGTGAGAAGCTTTTAACGGTGTAACCCAGTCCGGAAAGTTT
G
Run BLAST on NCBI

transcript from alignment at scaffold_76:60455..61827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072309 ID=TCONS_00072309|Name=TCONS_00072309|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at scaffold_76:60455..61827+ (Clytia hemisphaerica)
GTCGGTATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGC CCCATAACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCT GCCAGGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTT GCTCGCTTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTAC AATGGACCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCC TGGTCGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAG GTCCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTACTTTCGTCT CTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTC ACTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATG GATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGT CGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAAC TCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAG GACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCT CTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTT GCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATG GATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGT CGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAAC TCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAG GACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCT CTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTT GCTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATG GATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGT CGGTACAATGGATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAAC CCGCCCTGGTCGGTATAAGGCTTTGGGTATCTTGTAGCCTTCTGCAATAG AACATAAAGCCAAGACAGCAGCAAAAATTGCGACTGTTGCAGGCTTCATG CTAAAATTGTGAAATAGATATTTGTGAAACTTTTCTTCTGATTTTGTCAA ATCCTATTTTGCCAATGGCAAATTACAATGCTGTGAGAAGCTTTTAACGG TGTAACCCAGTCCGGAAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044898XLOC_044898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072309-exon-scaffold_76-1491911889:60455..60465TCONS_00072309-exon-scaffold_76-1491911889:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:60455..60465TCONS_00072309-exon-scaffold_76-1510915933:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:60455..60465TCONS_00072309-exon-scaffold_76-1575043694:60455..60465Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1491911889:60718..60754TCONS_00072309-exon-scaffold_76-1491911889:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:60718..60754TCONS_00072309-exon-scaffold_76-1510915933:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:60718..60754TCONS_00072309-exon-scaffold_76-1575043694:60718..60754Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1491911889:61475..61827TCONS_00072309-exon-scaffold_76-1491911889:61475..61827Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1510915933:61475..61827TCONS_00072309-exon-scaffold_76-1510915933:61475..61827Clytia hemisphaericaexon
TCONS_00072309-exon-scaffold_76-1575043694:61475..61827TCONS_00072309-exon-scaffold_76-1575043694:61475..61827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:60455..61827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.240916 0.642596 0 0 0 10.1813 12.2958 71.8826 34.0696 75.5246 52.0114 5.89001 4.62181 22.9559 26.8711 20.5296 19.1634 1.33288 1.26263 63.7673 78.1477 191.496 214.946 284.576 275.477 2337.72 2383.91 9.82973 12.2985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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