TCONS_00072307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072307
Unique NameTCONS_00072307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072307 ID=TCONS_00072307|Name=TCONS_00072307|organism=Clytia hemisphaerica|type=transcript|length=545bp
ACCTTTTTGTCTAGCTTTCAACGTAATCCTAATTTAACTTTTTCTCGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATA
ACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTTTCGTCTCTGCCAGG
AGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTTTCGT
CTCTGCCAGGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTTGGGT
ATCTTGTAGCCTTCTGCAATAGAACATAAAGCCAAGACAGCAGCAAAAAT
TGCGACTGTTGCAGGCTTCATGCTAAAATTGTGAAATAGATATTTGTGAA
ACTTTTCTTCTGATTTTGTCAAATCCTATTTTGCCAATGGCAAATTACAA
TGCTGTGAGAAGCTTTTAACGGTGTAACCCAGTCCGGAAAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_76:60059..61827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072307 ID=TCONS_00072307|Name=TCONS_00072307|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_76:60059..61827+ (Clytia hemisphaerica)
ACCTTTTTGTCTAGCTTTCAACGTAATCCTAATTTAACTTTTTCTCGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGCCCCATA
ACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCTGCCAGG
AGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTTGCTCGC
TTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTACAATGGA
CCTTGCTTACTTTCGTGTCTGCCAGGAGGACCCATAACCCGCCCTGGTCG
GTATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGCCCCA
TAACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCTGCCA
GGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTTGCTC
GCTTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTACAATG
GACCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGT
CGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGTCC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTACTTTCGTCTCTGC
CAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTT
TCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATC
TTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGT
ACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGT
CCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGC
CAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATC
TTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGT
ACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGT
CCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGC
CAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ACAATGGATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACCCGC
CCTGGTCGGTATAAGGCTTTGGGTATCTTGTAGCCTTCTGCAATAGAACA
TAAAGCCAAGACAGCAGCAAAAATTGCGACTGTTGCAGGCTTCATGCTAA
AATTGTGAAATAGATATTTGTGAAACTTTTCTTCTGATTTTGTCAAATCC
TATTTTGCCAATGGCAAATTACAATGCTGTGAGAAGCTTTTAACGGTGTA
ACCCAGTCCGGAAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044898XLOC_044898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072307-exon-scaffold_76-1491911889:60059..60213TCONS_00072307-exon-scaffold_76-1491911889:60059..60213Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1510915933:60059..60213TCONS_00072307-exon-scaffold_76-1510915933:60059..60213Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1575043694:60059..60213TCONS_00072307-exon-scaffold_76-1575043694:60059..60213Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1491911889:60718..60754TCONS_00072307-exon-scaffold_76-1491911889:60718..60754Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1510915933:60718..60754TCONS_00072307-exon-scaffold_76-1510915933:60718..60754Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1575043694:60718..60754TCONS_00072307-exon-scaffold_76-1575043694:60718..60754Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1491911889:61475..61827TCONS_00072307-exon-scaffold_76-1491911889:61475..61827Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1510915933:61475..61827TCONS_00072307-exon-scaffold_76-1510915933:61475..61827Clytia hemisphaericaexon
TCONS_00072307-exon-scaffold_76-1575043694:61475..61827TCONS_00072307-exon-scaffold_76-1575043694:61475..61827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:60059..61827 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top