TCONS_00072300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072300
Unique NameTCONS_00072300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072300 ID=TCONS_00072300|Name=TCONS_00072300|organism=Clytia hemisphaerica|type=transcript|length=525bp
TTTTTAAGACGATGATGCGATGGATGATTTGATGAACTTTTAGATCATTT
ATTATCATAAAGTGTTACTGGGATTTGATTAAGTAAtaccaaagtatttt
tcaacaaattatggacaaaaatccAGACGTTGCGATTATTAATTATTGTG
ATTGCGATTGATTGATGCATGGGTTGGACGGCAATGATATGTTCTGTTCG
cgtcaaaaatcttcttaaaattgagtcggtcggtcggtagtaaatttagt
agggttttttggaaaattgtttcaaagtatagtttttaatatttattcgt
TCGCTTGATCGAAAATTCCGACAATTTTCTGACTCGTCTGACTAGGAATT
TTTGTCTGCCAAGTTGGTCAGTCGGCtgacgcgaacggaacatatttttg
attgtcgCCTTGGAGTTTTTCACCAAACTGCGATTTGATATTGAAGACGA
TGGATGATTTGATGAACTTTTAGATCATTTATTATGATAAAGTGTTACTG
GAATTTGATTAAGTAAGACCaaagt
Run BLAST on NCBI

transcript from alignment at scaffold_75:18650..19174

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072300 ID=TCONS_00072300|Name=TCONS_00072300|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at scaffold_75:18650..19174 (Clytia hemisphaerica)
actttGGTCTTACTTAATCAAATTCCAGTAACACTTTATCATAATAAATG
ATCTAAAAGTTCATCAAATCATCCATCGTCTTCAATATCAAATCGCAGTT
TGGTGAAAAACTCCAAGGcgacaatcaaaaatatgttccgttcgcgtcaG
CCGACTGACCAACTTGGCAGACAAAAATTCCTAGTCAGACGAGTCAGAAA
ATTGTCGGAATTTTCGATCAAGCGAacgaataaatattaaaaactatact
ttgaaacaattttccaaaaaaccctactaaatttactaccgaccgaccga
ctcaattttaagaagatttttgacgCGAACAGAACATATCATTGCCGTCC
AACCCATGCATCAATCAATCGCAATCACAATAATTAATAATCGCAACGTC
TggatttttgtccataatttgttgaaaaatactttggtaTTACTTAATCA
AATCCCAGTAACACTTTATGATAATAAATGATCTAAAAGTTCATCAAATC
ATCCATCGCATCATCGTCTTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044896XLOC_044896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072300-exon-scaffold_75-1491911889:18650..19174TCONS_00072300-exon-scaffold_75-1491911889:18650..19174Clytia hemisphaericaexon
TCONS_00072300-exon-scaffold_75-1510915933:18650..19174TCONS_00072300-exon-scaffold_75-1510915933:18650..19174Clytia hemisphaericaexon
TCONS_00072300-exon-scaffold_75-1575043694:18650..19174TCONS_00072300-exon-scaffold_75-1575043694:18650..19174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:18650..19174 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03353	0.410859	0.591896	1.00171	1.07162	1.11198	0.763229	0	0	1.1453	0.249106	1.29297	0.738664	0.621836	1.13964	0.356876	1.00194	1.14361	2.78767	0.969654	6.06938	6.92225	1.98003	2.72051	0	0	4.70255	2.53506	2.91778	3.09341
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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