TCONS_00072296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072296
Unique NameTCONS_00072296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072296 ID=TCONS_00072296|Name=TCONS_00072296|organism=Clytia hemisphaerica|type=transcript|length=2384bp
NNTCAATCCCCAGTCGGGACATaaaaagattcccaaaatggtacttgatg
ccgcTCTGCTTGAttctcagcaattaagagaaagatcaagggtaagtgga
gcaatttAGGGAAAAAGGTGGCATCCTCCCCTACCTCCGACTGCAGTCCC
AGGATTACTTATACTTACATATAAGCATTATGCTTACCATCTTTTGGTAC
TACTGCCGTTTGGGGTAACTTTCATAAGGCTTGAGGTGATTATCATCATC
AGCATCATCATCAGACAAACAGAGTAATAAAACAATGATGTGCCCAAAAA
AGTTTTGTAGATAACGATTTTTCAATCCTTGGTCACCCATTTGTAACTAT
CATACTCCAATCAAAGAGATTAGAGTCCTCAAAATGCAATAAAGACATCA
TGTGGCCATTTTGTCTCTTGCGATGGACTATTTAAAGTTGATTATATTTA
AATAATGATCGCTAAATTTATTGTCTTTACAAATTCTATATATTGGCAGT
AAAACTGACGTGGACCTAAATCTAAAGAATCAAGAGTGTAAAATCAGTGG
TTAGCAGAGGTGTAATGCAAAGTATCAAGCAAAATGTGATGTTTTAATCT
ATGAAAGGTTTGCATATATAGTCCAACATGTCCCTGAGGAGCTTTATTTA
TATACAATCACGacttaaacaaaacaaaacaaaacattcacaGATAATGT
AATCtaattaagagaaggatttATTTCTTTGCCATCCCTCTCTATTCCCT
TTAAAAGGCTAAACCAAAGATACTTATGTAATGACCCGTTTTACTTTGAA
AACCTTCTCAAAGGTATTCTTTTCTAATTTAGCATTATGGTTTAACCAAA
TTTATCCGACAATCAATCCAAAAATGTTAGAAGCAAAGTATTTTACTTTT
GAACACTTTCAAAAGGTATTATAAAGTAATGAAGGAAGCAGAGTAGTATA
CCATACGTACGATATTCATAAAACTTGAACAACCTGAACAGTACCTCAAA
GACAtgcaatcttcttttttttttgaatttttaaagactCGGCCTcgaaa
aagattcaaatttacattaaaggaagaaacggCAATAGACACCAAAGGCA
GATGGATAAATTGAAAAGAATGAATGGAAAGCAAGCGAATGCAATAAATA
ATAGAACAGCTAGGTGAAAGACACTCTAATTTGACGGTAGACGCCTCACT
TTTTTCTATTACCTTTCATGCAGGTGATACCATATTGCAAGAATTCCTGG
TTTGTTTTGCATTGCCGAAAAAGTCACCCTCTTCAACGGAGAATCTGTTG
TACTGAAAACAAATAAGCCAGAGAGTTTTGGTCTTCATAGCTTAGCCGTC
CTCAGTCACGAACATCGTCTCCTAAAGTTAGATAGAAATCACGCAAATGT
GGTTTCGGCATTTAGTTTGGTCCCCACAAACGGGATATTTGCTCATGTTA
TGAAATTTGAGTATAGCACAAGTCTATTTGAAATGTCACTAAAAtctatt
ttcatattttctatttcaaatttcaagtcGATCATCGAGGGAGTTGCCGA
CGGActtaactttttgttaactttttcattcataaCCATCTTATTACAGA
CAACATTATTGTTATTAATAGTTCCCCTAGAATAGTTGGGTTTACGTTTC
CACCAAAAACAATATATACAAGATGTcttaaaaaagtttcaaggttcAAA
TCATTTGGCTACCGAATTATTCAACGGGTCTTGTGCTACATATTCGACCG
ATGTTTATGTATTTGGGGTACAGAGCATCTTAAAGATGAGATTCGGCTTT
TCAATGAACATAAACTTCAAGTCCAAAGTTGACTGTTATGCTGACAGCTT
ACGGCAGACCTAAGGCTATCGCGCAAGTTTCtggattaaaaaacaaaacg
cATGCTATATTACAAGATATGATTTTTAGATTAGATAATATTTAACATTA
TGCATTTTCTGTTTCCTCTTAAGGCTAAGTATTTAATCCATCATTCATGC
ATAACTCAAAAAATTCCTtgaattcaaataaattttttttttactttttc
aagcAGTTTCAAGAACCCTGCTGTTTTATCGATTGAACTGGTATTATTAT
TAGAAACAATGCCAatttatataaaagaaacaattaaTATATTTCAAATA
GTAATAGTTATCGTTACATACGTGCATTGGAAAAAAGTTATTAGGAAACA
ATCCGAATCGTCAGCCGGAACAAGTTGGAGTTTTGCAAATTTCTGTGATA
ACGTCATATGGACGAGACGAGTCGAGAGAGTTACTAGTTATCCTTAGTCA
AATAAAGAGGTGATTGCTTATTCAGTGAACAGAAATAATTGCTTCCTTGG
CACTCGATGAATATGGCTATACCTGAGTATCCNN
Run BLAST on NCBI

transcript from alignment at scaffold_75:2159..5292-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072296 ID=TCONS_00072296|Name=TCONS_00072296|organism=Clytia hemisphaerica|type=transcript|length=3134bp|location=Sequence derived from alignment at scaffold_75:2159..5292- (Clytia hemisphaerica)
NNTCAATCCCCAGTCGGGACATAAAAAGATTCCCAAAATGGTACTTGATG CCGCTCTGCTTGATTCTCAGCAATTAAGAGAAAGATCAAGGGTAAGTGGA GCAATTTAGGGAAAAAGGTGGCATCCTCCCCTACCTCCGACTGCAGTCCC AGGATTACTTATACTTACATATAAGCATTATGCTTACCATCTTTTGGTAC TACTGCCGTTTGGGGTAACTTTCATAAGGCTTGAGGTGATTATCATCATC AGCATCATCATCAGACAAACAGAGTAATAAAACAATGATGTGCCCAAAAA AGTTTTGTAGATAACGATTTTTCAATCCTTGGTCACCCATTTGTAACTAT CATACTCCAATCAAAGAGATTAGAGTCCTCAAAATGCAATAAAGACATCA TGTGGCCATTTTGTCTCTTGCGATGGACTATTTAAAGTTGATTATATTTA AATAATGATCGCTAAATTTATTGTCTTTACAAATTCTATATATTGGCAGT AAAACTGACGTGGACCTAAATCTAAAGAATCAAGAGTGTAAAATCAGTGG TTAGCAGAGGTGTAATGCAAAGTATCAAGCAAAATGTGATGTTTTAATCT ATGAAAGGTTTGCATATATAGTCCAACATGTCCCTGAGGAGCTTTATTTA TATACAATCACGACTTAAACAAAACAAAACAAAACATTCACAGATAATGT AATCTAATTAAGAGAAGGATTTATTTCTTTGCCATCCCTCTCTATTCCCT TTAAAAGGCTAAACCAAAGATACTTATGTAATGACCCGTTTTACTTTGAA AACCTTCTCAAAGGTATTCTTTTCTAATTTAGCATTATGGTTTAACCAAA TTTATCCGACAATCAATCCAAAAATGTTAGAAGCAAAGTATTTTACTTTT GAACACTTTCAAAAGGTATTATAAAGTAATGAAGGAAGCAGAGTAGTATA CCATACGTACGATATTCATAAAACTTGAACAACCTGAACAGTACCTCAAA GACATGCAATCTTCTTTTTTTTTTGAATTTTTAAAGACTCGGCCTCGAAA AAGATTCAAATTTACATTAAAGGAAGAAACGGCAATAGACACCAAAGGCA GATGGATAAATTGAAAAGAATGAATGGAAAGCAAGCGAATGCAATAAATA ATAGAACAGCTAGGTGAAAGACACTCTAATTTGACGGTAGACGCCTCACT TTTTTCTATTACCTTTCATGCAGGTGATACCATATTGCAAGAATTCCTGG TTTGTTTTGCATTGCCGAAAAAGTCACCCTCTTCAACGGAGAATCTGTTG TACTGAAAACAAATAAGCCAGAGAGTTTTGGTCTTCATAGCTTAGCCGTC CTCAGTCACGAACATCGTCTCCTAAAGTTAGATAGAAATCACGCAAATGT GGTTTCGGCATTTAGTTTGGTCCCCACAAACGGGATATTTGCTCATGTTA TGAAATTTGAGTATAGCACAAGTCTATTTGAAATGTCACTAAAATCTATT TTCATATTTTCTATTTCAAATTTCAAGTCGATCATCGAGGGAGTTGCCGA CGGACTTAACTTTTTGTTAACTTTTTCATTCATAACCATCTTATTACAGA CAACATTATTGTTATTAATAGTTCCCCTAGAATAGTTGGGTTTACGTTTC CACCAAAAACAATATATACAAGATGTCTTAAAAAAGTTTCAAGGTTCAAA TCATTTGGCTACCGAATTATTCAACGGGTCTTGTGCTACATATTCGACCG ATGTTTATGTATTTGGGGTACAGAGCATCTTAAAGATGAGATTCGGCTTT TCAATGAACATAAACTTCAAGTCCAAAGTTGACTGTTATGCTGACAGCTT ACGGCAGACCTAAGGCTATCGCGCAAGTTTCTGGATTAAAAAACAAAACG CATGCTATATTACAAGATATGATTTTTAGATTAGATAATATTTAACATTA TGCATTTTCTGTTTCCTCTTAAGGCTAAGTATTTAATCCATCATTCATGC ATAACTCAAAAAATTCCTTGAATTCAAATAAATTTTTTTTTTACTTTTTC AAGCAGTTTCAAGAACCCTGCTGTTTTATCGATTGAACTGGTATTATTAT TAGAAACAATGCCAATTTATATAAAAGAAACAATTAATATATTTCAAATA GTAATAGTTATCGTTACATACGGTACATTGTTTTTTAAATATATTTTTCG AGTTTGGACGTTCGTCTTATTCTCCGAGTCTTTAGGAGAGATTTAGGCCT TCTTTTTGCCAATCAAATTGCTAACTTTTTTTCATGTTTGCAATAAATTC AGGTAGTTAGTCTGATTCAGTTCATAGAGAACAATAGTTTCTCATTTTTC GAAATGGCCTAAATGTTGCTTTATTTAATTCATGTGAATTTTCTTATTAT GAACATTATAAAATCCAAGCCGATTTTTAGGCTTTGAGGAAATTTAACCA TTGTGTAACCATTTGGATTTGGGCCATTTGAAGTAAACTTTTCGTTATCA AAGGATTTGGAAAAGATTTTCTCAAAAATTTAAGTGTCTGTAAAATCTGT GAAATTTTTTCGATTTTTAATTCTCTCTCTTTAGTGCATTGGAAAAAAGT TATTAGGAAACAATCCGAATCGTCAGCCGGAACAAGTTGGAGTTTTGCAA ATTTCTGTGATAACGTCATATGGACGAGACGAGTCGAGAGAGTTACTAGT TATCCTTAGTCAAATAAAGAGGTGTGTATTTCATAATCTTGGATTAATTA CCACAAGCATTTCATGTGTTATCGTGTTATTCTGTACATTTCCAATCCGA TCGGGACAAGTTGAAGGCAAAAGGCATACCCTCAATTTGAAGAGCTTATA TATCAACATTTGAAAAACACAATTATGTTTAATAAAAAAATAATTGAAAA TGATCGATCTATATAGCTCTTATCAAAAATTGTGTAGTTAAGTAATTTGG CACTCTATCGGTATTATGTCATATATTAATATCCTAATTTTAGAGAAATC ATCCTAAACAATATAGTTCGGCAATAAAAAAAATTAATCATGACATTTTC TTTCTACAGGTGATTGCTTATTCAGTGAACAGAAATAATTGCTTCCTTGG CACTCGATGAATATGGCTATACCTGAGTATCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044893XLOC_044893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072296-exon-scaffold_75-1575043694:3121..5292TCONS_00072296-exon-scaffold_75-1575043694:3121..5292Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1575043694:2572..2708TCONS_00072296-exon-scaffold_75-1575043694:2572..2708Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1575043694:2159..2233TCONS_00072296-exon-scaffold_75-1575043694:2159..2233Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1510915933:3121..5292TCONS_00072296-exon-scaffold_75-1510915933:3121..5292Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1510915933:2572..2708TCONS_00072296-exon-scaffold_75-1510915933:2572..2708Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1510915933:2159..2233TCONS_00072296-exon-scaffold_75-1510915933:2159..2233Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1491911889:3121..5292TCONS_00072296-exon-scaffold_75-1491911889:3121..5292Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1491911889:2572..2708TCONS_00072296-exon-scaffold_75-1491911889:2572..2708Clytia hemisphaericaexon
TCONS_00072296-exon-scaffold_75-1491911889:2159..2233TCONS_00072296-exon-scaffold_75-1491911889:2159..2233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:2159..5292 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.273791 0.259473 0.615093 0.81578 2.35213 1.63598 1.26166 1.48082 0.646304 1.72616 0.818068 1.72309 0.627995 1.09863 0.208534 0.182747 0.151998 0.210824 0.0391081 0.040638 0.242546 0.208303 0.17603 0.189621 1.07392 1.69067 0.274843 0.0753408 0.254261 0.190138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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