TCONS_00072287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072287
Unique NameTCONS_00072287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072287 ID=TCONS_00072287|Name=TCONS_00072287|organism=Clytia hemisphaerica|type=transcript|length=2007bp
AGCCGATGCATCAGAAGACTCCCAGTCCCTACGTATTCCAAGGATATAAA
GATCTTCCACACTTCATTCAAATCAAGCCATTCAACTCCAACAGACGACT
CCAACAGTGCTATCTTCATGCTGCAGTCCATCCAAATCAACAAACGAACG
TACACCATCTTTTACGACTCTGGCTGCAGCGATTTTATCAGTCGCTTCGA
GGCAGTCAGGCATCTTGGATCCAACGCAATCAAGCAATTCTCTGGGGACA
TCTCAATGGGTGGTGTTGGTGGATCAGTCAATATTACATCTCACGGAGTA
TACACCATCTCCATTCCTCTCAGCCACGGAGTTAATGCCATGATGACTGG
ACCTTGCATGGATCGCATAACCGAGACTTTTCCAAGCTACCCACTCCAAG
GAAGGGTCTACGAGGACATCAAGACTCAATACTTGAAAGAAGGTAATAAA
CTTCAATTTCTTCCTTCCGTTCCTAAATCCATTGGAGGAGACGTCGATTT
TATGGTGGGCATCAGATATCAGCGATACTTCCCAGAACCCATCTTCCAAC
TTCCATCTGGATTGACGATATACCGATCTCAATTCATCAACGCAGACGGT
TCCACTGGTGTCATCGGAGGACCTCACGAGGTCTTCAACAATGTTGGCTC
AAGTCACCTCTCCACACACTTCATCTCCAATCAATTGGCTCTCTTTCGAA
ATGGCTATCAAGTCAACCCAGATGTGCGCATGCTCGGATATTCTGCAACC
ATCGGTGACGTCACTAGCAACAACACACTTGACGAAGACGATGATGTTGA
TGTTCAGAAGCTCATCACATTCAATGAAGCGGAACGTGCTGGCAGCGAAT
GGTCATTTCGCTGTGTTAATTGTAGAGGATGTGAGACGTGTCGCAACCAA
CCAAACGAAATCATGAGCATCAAGAAGGAAACAGAGCAGCAGATCATAAA
TGATTCCATCACAGTCGATGTACAAAATCACCAATCAATTGCCACCCTCC
CACTGATGGCTGACCCAACACACCGTTTGCAACCAAATCGACATATTGCA
CTGAAGGTCTACAACCAACAAGTTCATCGCCTCGCAAAGAACACCAAAGA
TAGAGAAGACATCCTCCATTCGGAACAAAAACTTCAGAAGCTTGGATATG
TAGATTACGTGAAAAATCTATCAACAGAATCTCAACAAATCCTCAAAGAA
TCACCTTACCAGAATTTCATACCATGGCGTGCCGTTTGGAAGGAGAGTTC
GGTGTCAACGCCATGCAGAGTGGTATCCGACACAGGATCCTCTCTGAATG
ACATCTTGGCAAAAGGACGCAACAGTATGAATCGATTGGTTGATATATTT
GTGCGGTGGAGGTGCCACTCTGTGGTATTCCACACTGATGTACAAAAAAT
GTATAACTCCATCAAATTGGACCAATGTCACTGGGACTCCAACGATATCT
CTGGCAAGACTCACTGGACCCTTCACAGCCCCCAGAAGAGAAGGTCATAA
AAACACTCATTTATGGGATCAAGTCAAGCGGCAACCAAGCGGAGAGAGGA
TTGCGAGAGACAGCCCGGATCCTCAAGGACCGATATCCTACCGGCCACAA
GATTGTTTCCGAAGATGTGTACGTGGACGATTGTTTGTCAGGTTCATCAG
GCATGACAGAAGTCCAATCAATAGCAGACGATCTAGAAGTTGCTGTCAAT
CACGGTGGCTTTGGCCTCAAAGGCTTCACATTTTCATCAAGACGTCCTCA
AGAGTCTCTATCTGCTGATGGTCAATAGgttcagaggaatgtaaagagat
ggaaaaacagcttcttgaaaacaatggaaaaacggctcgtcatataccag
gtctcttgccctaagggagtttatgtcgagtaaataggtttcttttgttg
tcgctataaaaaaactgcataattagcgtgttgtgacaaaattcttttgt
ttcaagcctgattatgcgcaaacttttagggcttatattttgggtacacc
tttCCTA
Run BLAST on NCBI

protein sequence of TCONS_00072287-protein

>TCONS_00072287-protein ID=TCONS_00072287-protein|Name=TCONS_00072287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
SRCIRRLPVPTYSKDIKIFHTSFKSSHSTPTDDSNSAIFMLQSIQINKRT
YTIFYDSGCSDFISRFEAVRHLGSNAIKQFSGDISMGGVGGSVNITSHGV
YTISIPLSHGVNAMMTGPCMDRITETFPSYPLQGRVYEDIKTQYLKEGNK
LQFLPSVPKSIGGDVDFMVGIRYQRYFPEPIFQLPSGLTIYRSQFINADG
STGVIGGPHEVFNNVGSSHLSTHFISNQLALFRNGYQVNPDVRMLGYSAT
IGDVTSNNTLDEDDDVDVQKLITFNEAERAGSEWSFRCVNCRGCETCRNQ
PNEIMSIKKETEQQIINDSITVDVQNHQSIATLPLMADPTHRLQPNRHIA
LKVYNQQVHRLAKNTKDREDILHSEQKLQKLGYVDYVKNLSTESQQILKE
SPYQNFIPWRAVWKESSVSTPCRVVSDTGSSLNDILAKGRNSMNRLVDIF
VRWRCHSVVFHTDVQKMYNSIKLDQCHWDSNDISGKTHWTLHSPQKRRS
Run BLAST on NCBI

transcript from alignment at scaffold_74:9333..11376+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072287 ID=TCONS_00072287|Name=TCONS_00072287|organism=Clytia hemisphaerica|type=transcript|length=2044bp|location=Sequence derived from alignment at scaffold_74:9333..11376+ (Clytia hemisphaerica)
AGCCGATGCATCAGAAGACTCCCAGTCCCTACGTATTCCAAGGATATAAA
GATCTTCCACACTTCATTCAAATCAAGCCATTCAACTCCAACAGACGACT
CCAACAGTGCTATCTTCATGCTGCAGTCCATCCAAATCAACAAACGAACG
TACACCATCTTTTACGACTCTGGCTGCAGCGATTTTATCAGTCGCTTCGA
GGCAGTCAGGCATCTTGGATCCAACGCAATCAAGCAATTCTCTGGGGACA
TCTCAATGGGTGGTGTTGGTGGATCAGTCAATATTACATCTCACGGAGTA
TACACCATCTCCATTCCTCTCAGCCACGGAGTTAATGCCATGATGACTGG
ACCTTGCATGGATCGCATAACCGAGACTTTTCCAAGCTACCCACTCCAAG
GAAGGGTCTACGAGGACATCAAGACTCAATACTTGAAAGAAGGTAATAAA
CTTCAATTTCTTCCTTCCGTTCCTAAATCCATTGGAGGAGACGTCGATTT
TATGGTGGGCATCAGATATCAGCGATACTTCCCAGAACCCATCTTCCAAC
TTCCATCTGGATTGACGATATACCGATCTCAATTCATCAACGCAGACGGT
TCCACTGGTGTCATCGGAGGACCTCACGAGGTCTTCAACAATGTTGGCTC
AAGTCACCTCTCCACACACTTCATCTCCAATCAATTGGCTCTCTTTCGAA
ATGGCTATCAAGTCAACCCAGATGTGCGCATGCTCGGATATTCTGCAACC
ATCGGTGACGTCACTAGCAACAACACACTTGACGAAGACGATGATGTTGA
TGTTCAGAAGCTCATCACATTCAATGAAGCGGAACGTGCTGGCAGCGAAT
GGTCATTTCGCTGTGTTAATTGTAGAGGATGTGAGACGTGTCGCAACCAA
CCAAACGAAATCATGAGCATCAAGAAGGAAACAGAGCAGCAGATCATAAA
TGATTCCATCACAGTCGATGTACAAAATCACCAATCAATTGCCACCCTCC
CACTGATGGCTGACCCAACACACCGTTTGCAACCAAATCGACATATTGCA
CTGAAGGTCTACAACCAACAAGTTCATCGCCTCGCAAAGAACACCAAAGA
TAGAGAAGACATCCTCCATTCGGAACAAAAACTTCAGAAGCTTGGATATG
TAGATTACGTGAAAAATCTATCAACAGAATCTCAACAAATCCTCAAAGAA
TCACCTTACCAGAATTTCATACCATGGCGTGCCGTTTGGAAGGAGAGTTC
GGTGTCAACGCCATGCAGAGTGGTATCCGACACAGGATCCTCTCTGAATG
ACATCTTGGCAAAAGGACGCAACAGTATGAATCGATTGGTTGATATATTT
GTGCGGTGGAGGTGCCACTCTGTGGTATTCNATATTTGTGCGGTGGAGGT
GCCACTCTGTGGTATTCCACACTGATGTACAAAAAATGTATAACTCCATC
AAATTGGACCAATGTCACTGGGACTCCAACGATATCTCTGGCAAGACTCA
CTGGACCCTTCACAGCCCCCAGAAGAGAAGGTCATAAAAACACTCATTTA
TGGGATCAAGTCAAGCGGCAACCAAGCGGAGAGAGGATTGCGAGAGACAG
CCCGGATCCTCAAGGACCGATATCCTACCGGCCACAAGATTGTTTCCGAA
GATGTGTACGTGGACGATTGTTTGTCAGGTTCATCAGGCATGACAGAAGT
CCAATCAATAGCAGACGATCTAGAAGTTGCTGTCAATCACGGTGGCTTTG
GCCTCAAAGGCTTCACATTTTCATCAAGACGTCCTCAAGAGTCTCTATCT
GCTGATGGTCAATAGgttcagaggaatgtaaagagatggaaaaacagctt
cttgaaaacaatggaaaaacggctcgtcatataccaggtctcttgcccta
agggagtttatgtcgagtaaataggtttcttttgttgtcgctataaaaaa
actgcataattagcgtgttgtgacaaaattcttttgtttcaagcctgatt
atgcgcaaacttttagggcttatattttgggtacacctttCCTA

Coding sequence (CDS) from alignment at scaffold_74:9333..11376+

>TCONS_00072287 ID=TCONS_00072287|Name=TCONS_00072287|organism=Clytia hemisphaerica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_74:9333..11376+ (Clytia hemisphaerica)
AGCCGATGCATCAGAAGACTCCCAGTCCCTACGTATTCCAAGGATATAAA
GATCTTCCACACTTCATTCAAATCAAGCCATTCAACTCCAACAGACGACT
CCAACAGTGCTATCTTCATGCTGCAGTCCATCCAAATCAACAAACGAACG
TACACCATCTTTTACGACTCTGGCTGCAGCGATTTTATCAGTCGCTTCGA
GGCAGTCAGGCATCTTGGATCCAACGCAATCAAGCAATTCTCTGGGGACA
TCTCAATGGGTGGTGTTGGTGGATCAGTCAATATTACATCTCACGGAGTA
TACACCATCTCCATTCCTCTCAGCCACGGAGTTAATGCCATGATGACTGG
ACCTTGCATGGATCGCATAACCGAGACTTTTCCAAGCTACCCACTCCAAG
GAAGGGTCTACGAGGACATCAAGACTCAATACTTGAAAGAAGGTAATAAA
CTTCAATTTCTTCCTTCCGTTCCTAAATCCATTGGAGGAGACGTCGATTT
TATGGTGGGCATCAGATATCAGCGATACTTCCCAGAACCCATCTTCCAAC
TTCCATCTGGATTGACGATATACCGATCTCAATTCATCAACGCAGACGGT
TCCACTGGTGTCATCGGAGGACCTCACGAGGTCTTCAACAATGTTGGCTC
AAGTCACCTCTCCACACACTTCATCTCCAATCAATTGGCTCTCTTTCGAA
ATGGCTATCAAGTCAACCCAGATGTGCGCATGCTCGGATATTCTGCAACC
ATCGGTGACGTCACTAGCAACAACACACTTGACGAAGACGATGATGTTGA
TGTTCAGAAGCTCATCACATTCAATGAAGCGGAACGTGCTGGCAGCGAAT
GGTCATTTCGCTGTGTTAATTGTAGAGGATGTGAGACGTGTCGCAACCAA
CCAAACGAAATCATGAGCATCAAGAAGGAAACAGAGCAGCAGATCATAAA
TGATTCCATCACAGTCGATGTACAAAATCACCAATCAATTGCCACCCTCC
CACTGATGGCTGACCCAACACACCGTTTGCAACCAAATCGACATATTGCA
CTGAAGGTCTACAACCAACAAGTTCATCGCCTCGCAAAGAACACCAAAGA
TAGAGAAGACATCCTCCATTCGGAACAAAAACTTCAGAAGCTTGGATATG
TAGATTACGTGAAAAATCTATCAACAGAATCTCAACAAATCCTCAAAGAA
TCACCTTACCAGAATTTCATACCATGGCGTGCCGTTTGGAAGGAGAGTTC
GGTGTCAACGCCATGCAGAGTGGTATCCGACACAGGATCCTCTCTGAATG
ACATCTTGGCAAAAGGACGCAACAGTATGAATCGATTGGTTGATATATTT
GTGCGGTGGAGGTGCCACTCTGTGGTATTCCACACTGATGTACAAAAAAT
GTATAACTCCATCAAATTGGACCAATGTCACTGGGACTCCAACGATATCT
CTGGCAAGACTCACTGGACCCTTCACAGCCCCCAGAAGAGAAGGTCATAA
AGCCGATGCATCAGAAGACTCCCAGTCCCTACGTATTCCAAGGATATAAA
GATCTTCCACACTTCATTCAAATCAAGCCATTCAACTCCAACAGACGACT
CCAACAGTGCTATCTTCATGCTGCAGTCCATCCAAATCAACAAACGAACG
TACACCATCTTTTACGACTCTGGCTGCAGCGATTTTATCAGTCGCTTCGA
GGCAGTCAGGCATCTTGGATCCAACGCAATCAAGCAATTCTCTGGGGACA
TCTCAATGGGTGGTGTTGGTGGATCAGTCAATATTACATCTCACGGAGTA
TACACCATCTCCATTCCTCTCAGCCACGGAGTTAATGCCATGATGACTGG
ACCTTGCATGGATCGCATAACCGAGACTTTTCCAAGCTACCCACTCCAAG
GAAGGGTCTACGAGGACATCAAGACTCAATACTTGAAAGAAGGTAATAAA
CTTCAATTTCTTCCTTCCGTTCCTAAATCCATTGGAGGAGACGTCGATTT
TATGGTGGGCATCAGATATCAGCGATACTTCCCAGAACCCATCTTCCAAC
TTCCATCTGGATTGACGATATACCGATCTCAATTCATCAACGCAGACGGT
TCCACTGGTGTCATCGGAGGACCTCACGAGGTCTTCAACAATGTTGGCTC
AAGTCACCTCTCCACACACTTCATCTCCAATCAATTGGCTCTCTTTCGAA
ATGGCTATCAAGTCAACCCAGATGTGCGCATGCTCGGATATTCTGCAACC
ATCGGTGACGTCACTAGCAACAACACACTTGACGAAGACGATGATGTTGA
TGTTCAGAAGCTCATCACATTCAATGAAGCGGAACGTGCTGGCAGCGAAT
GGTCATTTCGCTGTGTTAATTGTAGAGGATGTGAGACGTGTCGCAACCAA
CCAAACGAAATCATGAGCATCAAGAAGGAAACAGAGCAGCAGATCATAAA
TGATTCCATCACAGTCGATGTACAAAATCACCAATCAATTGCCACCCTCC
CACTGATGGCTGACCCAACACACCGTTTGCAACCAAATCGACATATTGCA
CTGAAGGTCTACAACCAACAAGTTCATCGCCTCGCAAAGAACACCAAAGA
TAGAGAAGACATCCTCCATTCGGAACAAAAACTTCAGAAGCTTGGATATG
TAGATTACGTGAAAAATCTATCAACAGAATCTCAACAAATCCTCAAAGAA
TCACCTTACCAGAATTTCATACCATGGCGTGCCGTTTGGAAGGAGAGTTC
GGTGTCAACGCCATGCAGAGTGGTATCCGACACAGGATCCTCTCTGAATG
ACATCTTGGCAAAAGGACGCAACAGTATGAATCGATTGGTTGATATATTT
GTGCGGTGGAGGTGCCACTCTGTGGTATTCCACACTGATGTACAAAAAAT
GTATAACTCCATCAAATTGGACCAATGTCACTGGGACTCCAACGATATCT
CTGGCAAGACTCACTGGACCCTTCACAGCCCCCAGAAGAGAAGGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044886XLOC_044886Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072287-proteinTCONS_00072287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072287-exon-scaffold_74-1491911889:9333..10693TCONS_00072287-exon-scaffold_74-1491911889:9333..10693Clytia hemisphaericaexon
TCONS_00072287-exon-scaffold_74-1510915933:9333..10693TCONS_00072287-exon-scaffold_74-1510915933:9333..10693Clytia hemisphaericaexon
TCONS_00072287-exon-scaffold_74-1575043694:9333..10693TCONS_00072287-exon-scaffold_74-1575043694:9333..10693Clytia hemisphaericaexon
TCONS_00072287-exon-scaffold_74-1491911889:10731..11376TCONS_00072287-exon-scaffold_74-1491911889:10731..11376Clytia hemisphaericaexon
TCONS_00072287-exon-scaffold_74-1510915933:10731..11376TCONS_00072287-exon-scaffold_74-1510915933:10731..11376Clytia hemisphaericaexon
TCONS_00072287-exon-scaffold_74-1575043694:10731..11376TCONS_00072287-exon-scaffold_74-1575043694:10731..11376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_74supercontigscaffold_74:9333..11376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1837	8.85225	7.89176	5.57064	4.0103	3.32015	3.49396	3.84052	2.00729	3.71956	2.60759	3.25783	2.22681	2.34204	1.94893	1.99152	1.9729	1.46253	1.5128	3.58169	1.88962	2.27988	1.09933	2.18883	6.56815	6.50045	1.64084	0.975847	3.12206	2.40547
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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